Wall clock time and date at job start Tue Mar 31 2020 12:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 C 1.53004 * 109.47012 * 66.02656 * 3 2 1 5 5 C 1.52998 * 109.47209 * 185.74176 * 4 3 2 6 6 C 1.53000 * 109.47402 * 186.02917 * 3 2 1 7 7 H 1.09004 * 109.46883 * 183.11492 * 6 3 2 8 8 C 1.52998 * 109.46734 * 63.11431 * 6 3 2 9 9 C 1.50697 * 109.47280 * 303.11240 * 6 3 2 10 10 O 1.21284 * 119.99533 * 354.74788 * 9 6 3 11 11 N 1.34768 * 120.00381 * 174.46425 * 9 6 3 12 12 C 1.46500 * 120.00690 * 179.97438 * 11 9 6 13 13 C 1.50694 * 109.47613 * 180.02562 * 12 11 9 14 14 C 1.38307 * 119.93347 * 269.73462 * 13 12 11 15 15 C 1.38101 * 120.06742 * 179.72664 * 14 13 12 16 16 C 1.38880 * 119.93035 * 0.56264 * 15 14 13 17 17 O 1.35750 * 120.06749 * 179.68407 * 16 15 14 18 18 C 1.34827 * 117.00246 * 185.86150 * 17 16 15 19 19 H 1.08000 * 119.99677 * 5.44577 * 18 17 16 20 20 C 1.38643 * 120.00620 * 185.43938 * 18 17 16 21 21 N 1.31567 * 119.99877 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00569 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46698 * 60.00179 * 22 20 18 24 24 H 1.48504 * 109.47340 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47074 * 300.00709 * 22 20 18 26 26 C 1.38883 * 119.86178 * 359.70703 * 16 15 14 27 27 C 1.38098 * 119.93091 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.46737 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47253 * 299.99885 * 1 2 3 30 30 H 1.09000 * 109.47247 * 60.00364 * 1 2 3 31 31 H 1.09000 * 109.47211 * 239.99574 * 2 1 3 32 32 H 1.09005 * 109.46992 * 120.00331 * 2 1 3 33 33 H 1.09001 * 109.46769 * 306.03154 * 3 2 1 34 34 H 1.08997 * 109.47044 * 305.74477 * 4 3 2 35 35 H 1.09002 * 109.46793 * 65.74457 * 4 3 2 36 36 H 1.08999 * 109.47061 * 184.84357 * 5 4 3 37 37 H 1.08997 * 109.46867 * 304.84286 * 5 4 3 38 38 H 1.08995 * 109.47069 * 64.84158 * 5 4 3 39 39 H 1.08991 * 109.47309 * 54.81918 * 8 6 3 40 40 H 1.09001 * 109.46929 * 174.81350 * 8 6 3 41 41 H 1.08992 * 109.47391 * 294.81013 * 8 6 3 42 42 H 0.97005 * 119.99815 * 0.02562 * 11 9 6 43 43 H 1.08991 * 109.47102 * 300.00765 * 12 11 9 44 44 H 1.09002 * 109.46563 * 60.00117 * 12 11 9 45 45 H 1.07996 * 119.96184 * 359.96821 * 14 13 12 46 46 H 1.07996 * 120.03332 * 180.26884 * 15 14 13 47 47 H 0.96999 * 120.00226 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.03196 * 179.97438 * 26 16 15 49 49 H 1.07997 * 119.96360 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6574 2.1187 1.3181 5 6 2.0400 3.5990 1.2617 6 6 3.5625 1.4451 -0.1515 7 1 3.9313 2.4694 -0.0960 8 6 3.9414 0.8392 -1.5043 9 6 4.1789 0.6287 0.9550 10 8 3.4795 0.1765 1.8367 11 7 5.5064 0.3962 0.9618 12 6 6.1057 -0.3971 2.0378 13 6 7.5917 -0.5074 1.8128 14 6 8.1016 -1.5594 1.0736 15 6 9.4624 -1.6601 0.8610 16 6 10.3201 -0.7101 1.4000 17 8 11.6588 -0.8099 1.1981 18 6 12.4435 0.0732 1.8479 19 1 12.0095 0.7585 2.5609 20 6 13.8074 0.1015 1.6010 21 7 14.3361 -0.7331 0.7322 22 14 14.8947 1.3245 2.5019 23 1 14.7997 1.0872 3.9647 24 1 16.3027 1.1527 2.0624 25 1 14.4456 2.7062 2.1945 26 6 9.8055 0.3420 2.1465 27 6 8.4432 0.4408 2.3500 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5912 1.9865 -0.8311 34 1 0.5827 2.0268 1.4750 35 1 2.1872 1.6376 2.1403 36 1 1.8469 4.0613 2.2298 37 1 3.0986 3.6917 1.0195 38 1 1.4469 4.0986 0.4958 39 1 3.4220 1.3732 -2.2999 40 1 5.0179 0.9247 -1.6520 41 1 3.6543 -0.2121 -1.5247 42 1 6.0651 0.7547 0.2545 43 1 5.9187 0.0892 2.9951 44 1 5.6638 -1.3935 2.0439 45 1 7.4344 -2.3006 0.6591 46 1 9.8595 -2.4793 0.2801 47 1 15.2905 -0.7136 0.5597 48 1 10.4701 1.0820 2.5672 49 1 8.0425 1.2584 2.9307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761418042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:23 Heat of formation + Delta-G solvation = -67.489795 kcal Electronic energy + Delta-G solvation = -26519.058760 eV Core-core repulsion = 22831.900984 eV Total energy + Delta-G solvation = -3687.157776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45675 -39.15444 -37.30908 -36.50126 -34.47195 -32.58268 -32.20590 -31.88690 -30.30010 -29.72807 -26.49103 -26.04428 -25.00478 -23.48691 -22.73580 -22.07234 -21.01179 -20.60296 -19.59637 -18.09418 -17.13429 -16.74275 -16.01146 -15.50891 -14.92613 -14.88837 -14.78875 -14.63277 -14.39644 -14.17113 -13.79094 -13.73729 -13.58275 -13.35553 -12.83095 -12.79241 -12.63686 -12.49870 -12.28119 -12.13029 -11.96910 -11.78722 -11.72239 -11.64013 -11.41596 -11.03776 -10.94201 -10.86342 -10.79421 -10.69960 -10.50952 -10.34600 -10.29981 -9.47890 -9.37444 -8.91297 -8.89386 -8.30628 -7.34266 -6.54651 -4.13630 2.05749 2.10849 2.68975 3.07676 3.07932 3.11656 3.42838 3.88967 4.42558 4.48672 4.61968 4.66401 4.90952 5.01422 5.04954 5.12407 5.15685 5.20679 5.22785 5.26340 5.36677 5.40350 5.41859 5.58006 5.62395 5.63558 5.65206 5.71616 5.78965 5.79653 5.85643 5.92369 5.92587 6.05943 6.10712 6.16924 6.22943 6.33150 6.35635 6.41836 6.57547 6.67335 6.78457 6.94095 7.11778 7.25245 7.32879 7.62843 7.70403 7.89807 8.32135 8.90521 9.58630 10.62727 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002210 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.013729 B =12668.834898 C =13067.402240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C -0.062 4.062 4 C -0.135 4.135 5 C -0.154 4.154 6 C -0.112 4.112 7 H 0.098 0.902 8 C -0.147 4.147 9 C 0.515 3.485 10 O -0.538 6.538 11 N -0.722 5.722 12 C 0.179 3.821 13 C -0.215 4.215 14 C -0.054 4.054 15 C -0.195 4.195 16 C 0.160 3.840 17 O -0.173 6.173 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.236 4.236 27 C -0.051 4.051 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.401 0.599 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.272 0.728 48 H 0.128 0.872 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.399 5.288 -2.524 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C -0.081 4.081 4 C -0.172 4.172 5 C -0.211 4.211 6 C -0.133 4.133 7 H 0.115 0.885 8 C -0.205 4.205 9 C 0.302 3.698 10 O -0.417 6.417 11 N -0.373 5.373 12 C 0.057 3.943 13 C -0.216 4.216 14 C -0.073 4.073 15 C -0.215 4.215 16 C 0.105 3.895 17 O -0.075 6.075 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.256 4.256 27 C -0.070 4.070 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.235 0.765 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.136 0.864 47 H 0.082 0.918 48 H 0.146 0.854 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.489 4.738 -2.112 22.106 hybrid contribution 0.957 0.915 0.052 1.325 sum -20.531 5.653 -2.060 21.395 Atomic orbital electron populations 1.21793 0.96464 1.01125 1.01309 1.21882 0.95386 0.96465 1.03516 1.20965 0.92089 0.96869 0.98136 1.21882 1.01526 0.94920 0.98895 1.21849 1.01177 0.96885 1.01213 1.21462 0.97243 1.00276 0.94341 0.88454 1.21844 1.01813 1.01641 0.95190 1.20617 0.82030 0.80512 0.86689 1.90556 1.60665 1.51626 1.38830 1.46420 1.07827 1.54432 1.28616 1.19955 0.89506 0.95211 0.89659 1.19220 0.93418 1.00131 1.08825 1.20525 0.93970 0.96471 0.96366 1.20208 0.92309 1.01246 1.07708 1.19456 0.85259 0.92595 0.92199 1.83992 1.11203 1.51492 1.60846 1.21293 0.88553 1.15760 1.21326 0.89023 1.25320 0.96359 0.97920 0.96873 1.70028 1.13082 1.34685 1.31538 0.85764 0.78640 0.79646 0.79317 1.19404 1.20199 1.19442 1.21163 0.95386 1.01718 1.07308 1.20638 0.92786 0.96714 0.96878 0.93202 0.92642 0.93440 0.92611 0.88983 0.91245 0.92197 0.89061 0.93056 0.92933 0.93261 0.91585 0.92011 0.91813 0.76490 0.91724 0.91653 0.87012 0.86399 0.91810 0.85445 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.69 37.16 0.36 -0.91 16 2 C -0.14 -1.32 4.80 -26.73 -0.13 -1.45 16 3 C -0.06 -0.56 1.60 -90.62 -0.15 -0.70 16 4 C -0.14 -1.32 5.08 -26.73 -0.14 -1.45 16 5 C -0.15 -1.32 9.79 37.16 0.36 -0.95 16 6 C -0.11 -1.02 2.40 -91.77 -0.22 -1.24 16 7 H 0.10 0.80 6.36 -51.93 -0.33 0.47 16 8 C -0.15 -1.15 8.56 37.16 0.32 -0.83 16 9 C 0.51 6.11 6.61 -10.99 -0.07 6.04 16 10 O -0.54 -7.81 11.41 5.55 0.06 -7.75 16 11 N -0.72 -8.53 5.41 -61.48 -0.33 -8.86 16 12 C 0.18 2.42 5.80 -5.20 -0.03 2.39 16 13 C -0.21 -3.36 5.25 -104.58 -0.55 -3.91 16 14 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 15 C -0.20 -3.89 9.99 -39.39 -0.39 -4.28 16 16 C 0.16 3.67 6.65 -39.10 -0.26 3.41 16 17 O -0.17 -4.76 9.76 0.06 0.00 -4.76 16 18 C -0.39 -10.62 9.44 30.88 0.29 -10.33 16 19 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.52 13.67 55.48 0.76 -23.76 16 22 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 C -0.24 -4.84 9.13 -39.39 -0.36 -5.20 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.47 6.48 -51.93 -0.34 0.14 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.52 6.34 -51.93 -0.33 0.19 16 32 H 0.09 1.14 5.62 -51.93 -0.29 0.85 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 6.36 -51.93 -0.33 0.23 16 35 H 0.09 1.12 5.51 -51.93 -0.29 0.83 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.45 6.32 -51.93 -0.33 0.12 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.46 7.44 -51.93 -0.39 0.07 16 41 H 0.06 0.54 6.64 -51.93 -0.35 0.19 16 42 H 0.40 4.31 7.66 -40.82 -0.31 3.99 16 43 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 44 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 46 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 47 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.13 2.63 5.72 -52.49 -0.30 2.33 16 49 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -29.45 384.05 -8.21 -37.66 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.63 Total: 7.80 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -1.83 Total: -20.99 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.43 Total: -32.62 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.06 Total: -12.51 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.45 -8.21 -37.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761418042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.830 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds