Wall clock time and date at job start Tue Mar 31 2020 12:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 C 1.53004 * 109.47012 * 66.02656 * 3 2 1 5 5 C 1.52998 * 109.47209 * 185.74176 * 4 3 2 6 6 C 1.53000 * 109.47402 * 186.02917 * 3 2 1 7 7 H 1.09004 * 109.46883 * 183.11492 * 6 3 2 8 8 C 1.52998 * 109.46734 * 63.11431 * 6 3 2 9 9 C 1.50697 * 109.47280 * 303.11240 * 6 3 2 10 10 O 1.21284 * 119.99533 * 354.74788 * 9 6 3 11 11 N 1.34768 * 120.00381 * 174.46425 * 9 6 3 12 12 C 1.46500 * 120.00690 * 179.97438 * 11 9 6 13 13 C 1.50694 * 109.47613 * 180.02562 * 12 11 9 14 14 C 1.38307 * 119.93347 * 269.73462 * 13 12 11 15 15 C 1.38101 * 120.06742 * 179.72664 * 14 13 12 16 16 C 1.38880 * 119.93035 * 0.56264 * 15 14 13 17 17 O 1.35750 * 120.06749 * 179.68407 * 16 15 14 18 18 C 1.34827 * 117.00246 * 185.86150 * 17 16 15 19 19 H 1.08000 * 119.99677 * 5.44577 * 18 17 16 20 20 C 1.38643 * 120.00620 * 185.43938 * 18 17 16 21 21 N 1.31567 * 119.99877 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00569 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46698 * 60.00179 * 22 20 18 24 24 H 1.48504 * 109.47340 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47074 * 300.00709 * 22 20 18 26 26 C 1.38883 * 119.86178 * 359.70703 * 16 15 14 27 27 C 1.38098 * 119.93091 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.46737 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47253 * 299.99885 * 1 2 3 30 30 H 1.09000 * 109.47247 * 60.00364 * 1 2 3 31 31 H 1.09000 * 109.47211 * 239.99574 * 2 1 3 32 32 H 1.09005 * 109.46992 * 120.00331 * 2 1 3 33 33 H 1.09001 * 109.46769 * 306.03154 * 3 2 1 34 34 H 1.08997 * 109.47044 * 305.74477 * 4 3 2 35 35 H 1.09002 * 109.46793 * 65.74457 * 4 3 2 36 36 H 1.08999 * 109.47061 * 184.84357 * 5 4 3 37 37 H 1.08997 * 109.46867 * 304.84286 * 5 4 3 38 38 H 1.08995 * 109.47069 * 64.84158 * 5 4 3 39 39 H 1.08991 * 109.47309 * 54.81918 * 8 6 3 40 40 H 1.09001 * 109.46929 * 174.81350 * 8 6 3 41 41 H 1.08992 * 109.47391 * 294.81013 * 8 6 3 42 42 H 0.97005 * 119.99815 * 0.02562 * 11 9 6 43 43 H 1.08991 * 109.47102 * 300.00765 * 12 11 9 44 44 H 1.09002 * 109.46563 * 60.00117 * 12 11 9 45 45 H 1.07996 * 119.96184 * 359.96821 * 14 13 12 46 46 H 1.07996 * 120.03332 * 180.26884 * 15 14 13 47 47 H 0.96999 * 120.00226 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.03196 * 179.97438 * 26 16 15 49 49 H 1.07997 * 119.96360 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6574 2.1187 1.3181 5 6 2.0400 3.5990 1.2617 6 6 3.5625 1.4451 -0.1515 7 1 3.9313 2.4694 -0.0960 8 6 3.9414 0.8392 -1.5043 9 6 4.1789 0.6287 0.9550 10 8 3.4795 0.1765 1.8367 11 7 5.5064 0.3962 0.9618 12 6 6.1057 -0.3971 2.0378 13 6 7.5917 -0.5074 1.8128 14 6 8.1016 -1.5594 1.0736 15 6 9.4624 -1.6601 0.8610 16 6 10.3201 -0.7101 1.4000 17 8 11.6588 -0.8099 1.1981 18 6 12.4435 0.0732 1.8479 19 1 12.0095 0.7585 2.5609 20 6 13.8074 0.1015 1.6010 21 7 14.3361 -0.7331 0.7322 22 14 14.8947 1.3245 2.5019 23 1 14.7997 1.0872 3.9647 24 1 16.3027 1.1527 2.0624 25 1 14.4456 2.7062 2.1945 26 6 9.8055 0.3420 2.1465 27 6 8.4432 0.4408 2.3500 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5912 1.9865 -0.8311 34 1 0.5827 2.0268 1.4750 35 1 2.1872 1.6376 2.1403 36 1 1.8469 4.0613 2.2298 37 1 3.0986 3.6917 1.0195 38 1 1.4469 4.0986 0.4958 39 1 3.4220 1.3732 -2.2999 40 1 5.0179 0.9247 -1.6520 41 1 3.6543 -0.2121 -1.5247 42 1 6.0651 0.7547 0.2545 43 1 5.9187 0.0892 2.9951 44 1 5.6638 -1.3935 2.0439 45 1 7.4344 -2.3006 0.6591 46 1 9.8595 -2.4793 0.2801 47 1 15.2905 -0.7136 0.5597 48 1 10.4701 1.0820 2.5672 49 1 8.0425 1.2584 2.9307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761418042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:22 Heat of formation + Delta-G solvation = -83.727598 kcal Electronic energy + Delta-G solvation = -26519.762884 eV Core-core repulsion = 22831.900984 eV Total energy + Delta-G solvation = -3687.861900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39768 -40.76194 -38.68920 -37.59402 -35.60881 -34.30424 -33.19693 -32.58832 -31.83562 -31.08022 -27.71623 -27.13846 -26.46254 -24.38169 -23.64624 -23.44868 -22.24899 -21.68672 -20.52950 -19.86516 -18.85926 -17.69102 -17.07240 -16.64223 -16.30569 -16.20913 -15.81416 -15.59636 -15.51944 -15.48928 -15.32944 -14.96035 -14.57353 -14.41371 -14.33870 -14.11536 -13.64808 -13.33863 -13.28991 -13.15404 -13.02424 -12.93751 -12.66105 -12.54485 -12.47903 -12.40217 -12.35851 -12.21533 -12.14551 -11.68864 -11.65725 -11.23444 -11.05017 -11.01869 -10.81669 -10.29053 -9.93067 -9.80902 -9.00052 -8.48529 -6.16756 0.55109 0.57118 1.35604 1.45300 1.51397 1.76706 2.17015 2.37661 2.86405 3.18000 3.47844 3.70824 3.84531 3.92437 3.94282 4.03170 4.17330 4.20028 4.35771 4.45055 4.47810 4.53568 4.56529 4.57163 4.68783 4.71712 4.79258 4.82285 4.94279 4.95034 4.98966 5.02398 5.04241 5.12867 5.16957 5.18913 5.26221 5.27523 5.36644 5.46917 5.49127 5.50669 5.53196 5.59695 5.68961 5.75110 5.81683 6.00730 6.15828 6.68231 6.96138 7.38837 7.75418 8.73990 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002210 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.013729 B =12668.834898 C =13067.402240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.060 4.060 4 C -0.133 4.133 5 C -0.152 4.152 6 C -0.106 4.106 7 H 0.111 0.889 8 C -0.145 4.145 9 C 0.513 3.487 10 O -0.564 6.564 11 N -0.719 5.719 12 C 0.185 3.815 13 C -0.181 4.181 14 C -0.044 4.044 15 C -0.204 4.204 16 C 0.121 3.879 17 O -0.228 6.228 18 C -0.413 4.413 19 H 0.102 0.898 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.256 1.256 26 C -0.243 4.243 27 C -0.047 4.047 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.408 0.592 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.146 0.854 46 H 0.115 0.885 47 H 0.273 0.727 48 H 0.120 0.880 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.124 6.964 -2.615 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.078 4.078 4 C -0.170 4.170 5 C -0.209 4.209 6 C -0.127 4.127 7 H 0.129 0.871 8 C -0.203 4.203 9 C 0.301 3.699 10 O -0.444 6.444 11 N -0.370 5.370 12 C 0.062 3.938 13 C -0.182 4.182 14 C -0.063 4.063 15 C -0.223 4.223 16 C 0.070 3.930 17 O -0.135 6.135 18 C -0.489 4.489 19 H 0.120 0.880 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.836 3.164 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.180 1.180 26 C -0.262 4.262 27 C -0.065 4.065 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.244 0.756 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.164 0.836 46 H 0.133 0.867 47 H 0.082 0.918 48 H 0.138 0.862 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.280 6.422 -2.202 25.212 hybrid contribution 1.355 0.325 0.104 1.398 sum -22.925 6.747 -2.099 23.989 Atomic orbital electron populations 1.21773 0.95599 1.01342 1.01777 1.21820 0.96194 0.96792 1.02278 1.20985 0.92151 0.96421 0.98291 1.21814 1.01266 0.95593 0.98355 1.21831 1.01437 0.95997 1.01632 1.21488 0.97014 1.00422 0.93813 0.87104 1.21851 1.02364 1.01316 0.94744 1.21126 0.81599 0.80198 0.86932 1.90575 1.61182 1.52629 1.40021 1.46273 1.08101 1.54324 1.28351 1.19825 0.87494 0.95997 0.90452 1.19522 0.94703 0.98332 1.05666 1.20867 0.92776 0.97151 0.95471 1.20443 0.93520 1.00712 1.07656 1.20005 0.84494 0.94519 0.93947 1.83955 1.13188 1.53198 1.63122 1.21759 0.89303 1.15924 1.21937 0.88047 1.26579 0.97640 0.99965 0.97787 1.70174 1.13421 1.37586 1.34415 0.84664 0.76318 0.77204 0.78167 1.18282 1.19728 1.18048 1.21246 0.96919 1.00998 1.07058 1.20929 0.91297 0.97729 0.96583 0.93196 0.92980 0.92101 0.92189 0.91777 0.89405 0.92060 0.91788 0.93287 0.92851 0.91878 0.89867 0.91540 0.92532 0.75613 0.91468 0.91201 0.83609 0.86687 0.91788 0.86238 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.69 71.98 0.70 -1.54 16 2 C -0.13 -2.37 4.80 30.59 0.15 -2.22 16 3 C -0.06 -0.92 1.60 -10.79 -0.02 -0.94 16 4 C -0.13 -2.35 5.08 30.60 0.16 -2.19 16 5 C -0.15 -2.22 9.79 71.98 0.70 -1.51 16 6 C -0.11 -1.61 2.40 -11.54 -0.03 -1.64 16 7 H 0.11 1.43 6.36 -2.39 -0.02 1.42 16 8 C -0.15 -1.79 8.56 71.98 0.62 -1.17 16 9 C 0.51 10.93 6.61 87.66 0.58 11.51 16 10 O -0.56 -15.51 11.41 -3.04 -0.03 -15.55 16 11 N -0.72 -14.73 5.41 -466.82 -2.53 -17.26 16 12 C 0.19 4.39 5.80 85.63 0.50 4.89 16 13 C -0.18 -5.13 5.25 -19.83 -0.10 -5.24 16 14 C -0.04 -1.35 9.69 22.25 0.22 -1.14 16 15 C -0.20 -8.13 9.99 22.39 0.22 -7.91 16 16 C 0.12 5.75 6.65 22.58 0.15 5.90 16 17 O -0.23 -13.32 9.76 -22.71 -0.22 -13.54 16 18 C -0.41 -23.38 9.44 67.92 0.64 -22.74 16 19 H 0.10 5.24 5.30 -2.91 -0.02 5.22 16 20 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 21 N -0.92 -55.25 13.67 21.61 0.30 -54.96 16 22 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 26 C -0.24 -9.94 9.13 22.39 0.20 -9.74 16 27 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 28 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.05 0.81 6.48 -2.39 -0.02 0.80 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.99 6.34 -2.39 -0.02 0.98 16 32 H 0.06 1.53 5.62 -2.38 -0.01 1.52 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.04 6.36 -2.39 -0.02 1.03 16 35 H 0.06 1.51 5.51 -2.39 -0.01 1.50 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.76 6.32 -2.39 -0.02 0.75 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.76 7.44 -2.39 -0.02 0.74 16 41 H 0.06 0.79 6.64 -2.39 -0.02 0.77 16 42 H 0.41 7.35 7.66 -92.70 -0.71 6.64 16 43 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 44 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 45 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 46 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 47 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.12 5.02 5.72 -2.91 -0.02 5.00 16 49 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -68.63 384.05 5.15 -63.48 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.25 Total: 31.72 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 5.36 Total: -37.70 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -2.23 Total: -72.21 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.26 Total: -29.09 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -68.63 5.15 -63.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761418042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.249 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds