Wall clock time and date at job start Tue Mar 31 2020 13:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 C 1.52998 * 109.47265 * 120.00253 * 2 1 3 5 5 H 1.08997 * 109.47975 * 60.02168 * 4 2 1 6 6 C 1.53092 * 109.48060 * 180.02562 * 4 2 1 7 7 C 1.53182 * 109.16277 * 177.58671 * 6 4 2 8 8 H 1.09002 * 109.61262 * 183.10817 * 7 6 4 9 9 N 1.46903 * 109.54007 * 62.89035 * 7 6 4 10 10 C 1.46903 * 111.00043 * 155.44344 * 9 7 6 11 11 C 1.50700 * 109.47015 * 179.97438 * 10 9 7 12 12 C 1.38296 * 119.92878 * 269.72739 * 11 10 9 13 13 C 1.38101 * 120.06668 * 179.72736 * 12 11 10 14 14 C 1.38879 * 119.93007 * 0.56393 * 13 12 11 15 15 O 1.35749 * 120.07099 * 179.68271 * 14 13 12 16 16 C 1.34833 * 116.99947 * 174.49279 * 15 14 13 17 17 H 1.07991 * 120.00247 * 5.05738 * 16 15 14 18 18 C 1.38653 * 119.99620 * 185.05829 * 16 15 14 19 19 N 1.31559 * 120.00317 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99771 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47131 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47143 * 120.00191 * 20 18 16 23 23 H 1.48502 * 109.47098 * 239.99704 * 20 18 16 24 24 C 1.38887 * 119.86081 * 359.71041 * 14 13 12 25 25 C 1.38097 * 119.92934 * 359.97438 * 24 14 13 26 26 C 1.53172 * 109.03639 * 303.02313 * 7 6 4 27 27 C 1.53085 * 109.16891 * 56.97989 * 26 7 6 28 28 O 1.42908 * 109.41425 * 302.39056 * 27 26 7 29 29 H 1.09002 * 109.46954 * 59.99822 * 1 2 3 30 30 H 1.09001 * 109.47008 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46652 * 300.00029 * 1 2 3 32 32 H 1.09004 * 109.47228 * 240.00463 * 2 1 3 33 33 H 1.09002 * 109.47367 * 299.99925 * 3 2 1 34 34 H 1.08992 * 109.47109 * 60.00316 * 3 2 1 35 35 H 1.08999 * 109.47268 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.52711 * 297.49608 * 6 4 2 37 37 H 1.09004 * 109.52071 * 57.68513 * 6 4 2 38 38 H 1.00897 * 111.00251 * 31.48533 * 9 7 6 39 39 H 1.08998 * 109.46503 * 299.99992 * 10 9 7 40 40 H 1.08998 * 109.46890 * 59.99459 * 10 9 7 41 41 H 1.08001 * 119.97018 * 359.97438 * 12 11 10 42 42 H 1.07998 * 120.03632 * 180.27118 * 13 12 11 43 43 H 0.97000 * 120.00109 * 180.02562 * 19 18 16 44 44 H 1.07996 * 120.03073 * 179.97438 * 24 14 13 45 45 H 1.07995 * 119.96133 * 180.02562 * 25 24 14 46 46 H 1.09001 * 109.52385 * 297.06840 * 26 7 6 47 47 H 1.09004 * 109.52194 * 176.88643 * 26 7 6 48 48 H 1.08999 * 109.48620 * 182.40683 * 27 26 7 49 49 H 1.09003 * 109.48968 * 62.37256 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6771 -1.7491 1.2491 6 6 3.5710 -0.7208 1.2497 7 6 4.0736 -1.3910 2.5322 8 1 5.1621 -1.3455 2.5663 9 7 3.6394 -2.7942 2.5560 10 6 4.5283 -3.6062 3.3978 11 6 4.0519 -5.0359 3.3982 12 6 3.1473 -5.4615 4.3537 13 6 2.7046 -6.7696 4.3534 14 6 3.1778 -7.6610 3.3993 15 8 2.7494 -8.9492 3.4003 16 6 3.1587 -9.7311 2.3809 17 1 3.8629 -9.3494 1.6566 18 6 2.6752 -11.0252 2.2626 19 7 1.8176 -11.4903 3.1452 20 14 3.2416 -12.1083 0.8499 21 1 4.1999 -11.3548 0.0019 22 1 3.9062 -13.3208 1.3914 23 1 2.0683 -12.5100 0.0330 24 6 4.0906 -7.2319 2.4445 25 6 4.5244 -5.9209 2.4462 26 6 3.4916 -0.6539 3.7422 27 6 1.9638 -0.6569 3.6455 28 8 1.5644 -0.0473 2.4162 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 3.9357 -1.2726 0.3834 37 1 3.9349 0.3058 1.2085 38 1 3.5823 -3.1710 1.6217 39 1 5.5433 -3.5610 3.0032 40 1 4.5170 -3.2194 4.4167 41 1 2.7836 -4.7692 5.0986 42 1 1.9948 -7.1003 5.0971 43 1 1.4797 -12.3958 3.0626 44 1 4.4607 -7.9229 1.7016 45 1 5.2339 -5.5866 1.7038 46 1 3.8540 0.3741 3.7514 47 1 3.7995 -1.1578 4.6584 48 1 1.5454 -0.0967 4.4817 49 1 1.5994 -1.6837 3.6771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776743456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:10 Heat of formation + Delta-G solvation = -65.768145 kcal Electronic energy + Delta-G solvation = -26839.738002 eV Core-core repulsion = 23152.654883 eV Total energy + Delta-G solvation = -3687.083119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.04367 -39.03597 -37.09410 -35.84815 -35.06731 -32.50099 -31.79270 -30.25343 -30.16189 -28.77820 -27.28067 -25.63617 -24.82298 -23.97438 -23.53343 -21.96040 -20.44547 -20.34870 -19.39480 -17.99138 -17.05073 -16.49025 -16.02590 -15.79516 -15.14784 -15.03438 -14.83093 -14.55841 -14.25093 -14.13025 -13.76324 -13.66197 -13.46274 -13.39321 -12.92379 -12.73710 -12.68156 -12.43272 -12.15730 -12.10692 -11.96158 -11.73227 -11.58710 -11.49453 -11.23788 -11.03644 -10.88558 -10.79976 -10.63449 -10.60067 -10.55951 -10.42842 -10.14922 -9.47903 -9.33860 -8.85274 -8.36446 -8.17630 -7.19290 -6.46388 -4.05269 2.21817 2.27352 3.10749 3.12445 3.17943 3.75975 3.95202 4.15007 4.43401 4.62486 4.68928 4.77226 4.84551 4.91618 5.04991 5.09357 5.14104 5.27421 5.29009 5.32955 5.40618 5.46278 5.50153 5.53402 5.57367 5.66364 5.71400 5.73000 5.77655 5.79571 5.84940 5.86246 5.89967 5.93090 5.99377 6.09437 6.20780 6.21498 6.27930 6.42187 6.70003 6.88984 7.00840 7.08059 7.25960 7.27108 7.33211 7.42453 7.46581 7.82357 7.98760 8.99377 9.69777 10.71734 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.002489 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.604769 B =11245.225183 C =11860.823087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.103 3.897 5 H 0.068 0.932 6 C -0.152 4.152 7 C 0.082 3.918 8 H 0.044 0.956 9 N -0.679 5.679 10 C 0.119 3.881 11 C -0.184 4.184 12 C -0.052 4.052 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.234 4.234 25 C -0.066 4.066 26 C -0.141 4.141 27 C 0.069 3.931 28 O -0.379 6.379 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.342 0.658 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 22.780 -3.879 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.202 4.202 4 C 0.045 3.955 5 H 0.086 0.914 6 C -0.190 4.190 7 C -0.028 4.028 8 H 0.062 0.938 9 N -0.312 5.312 10 C -0.009 4.009 11 C -0.186 4.186 12 C -0.071 4.071 13 C -0.214 4.214 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.085 4.085 26 C -0.179 4.179 27 C -0.008 4.008 28 O -0.298 6.298 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.161 0.839 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.250 22.698 -3.193 23.031 hybrid contribution 1.405 -0.961 -1.266 2.122 sum 3.655 21.737 -4.459 22.488 Atomic orbital electron populations 1.21760 0.94639 1.01891 1.01837 1.21180 0.96649 0.96799 0.96196 1.21816 1.00627 0.95881 1.01835 1.21983 0.91877 0.96148 0.85509 0.91406 1.22450 0.97568 1.01659 0.97340 1.21555 0.97036 0.89199 0.95008 0.93845 1.60630 1.52728 1.00657 1.17172 1.20651 0.92485 0.90321 0.97423 1.19100 1.04785 0.94208 1.00482 1.20445 0.95293 0.94176 0.97144 1.20228 1.05919 0.92963 1.02249 1.19406 0.91714 0.85598 0.93083 1.83982 1.64036 1.15359 1.44764 1.21365 1.26543 0.94151 1.04703 0.89060 1.25292 0.96049 0.96637 0.98565 1.70048 1.28554 1.16991 1.34130 0.85652 0.78598 0.79540 0.79655 1.19134 1.20141 1.20118 1.21115 1.03992 0.96766 1.03492 1.20575 0.98047 0.93055 0.96787 1.22130 0.97573 0.99768 0.98420 1.22431 0.93407 0.98970 0.85956 1.87841 1.74730 1.53703 1.13509 0.93092 0.92747 0.91821 0.90478 0.93207 0.91838 0.92846 0.91241 0.90414 0.83903 0.95543 0.91238 0.87154 0.86597 0.92057 0.85685 0.88032 0.91644 0.91075 0.89943 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.05 37.16 0.34 -0.96 16 2 C -0.09 -0.79 2.81 -90.62 -0.25 -1.05 16 3 C -0.14 -1.17 8.70 37.16 0.32 -0.85 16 4 C 0.10 1.03 2.22 -26.68 -0.06 0.97 16 5 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 6 C -0.15 -1.37 4.52 -26.59 -0.12 -1.49 16 7 C 0.08 0.81 2.85 -67.53 -0.19 0.61 16 8 H 0.04 0.43 7.81 -51.93 -0.41 0.02 16 9 N -0.68 -7.88 5.08 -107.79 -0.55 -8.43 16 10 C 0.12 1.53 5.61 -4.97 -0.03 1.50 16 11 C -0.18 -3.03 5.40 -104.58 -0.56 -3.59 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 13 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 14 C 0.16 3.75 6.65 -39.10 -0.26 3.49 16 15 O -0.18 -5.09 9.76 0.04 0.00 -5.09 16 16 C -0.39 -10.92 9.49 30.89 0.29 -10.62 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.29 13.67 55.48 0.76 -24.54 16 20 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 25 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 26 C -0.14 -1.34 5.74 -26.60 -0.15 -1.49 16 27 C 0.07 0.72 6.68 37.20 0.25 0.97 16 28 O -0.38 -4.25 9.06 -35.23 -0.32 -4.57 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 35 H 0.05 0.40 6.38 -51.93 -0.33 0.07 16 36 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 37 H 0.08 0.67 6.31 -51.93 -0.33 0.34 16 38 H 0.34 4.06 8.32 -39.29 -0.33 3.74 16 39 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 40 H 0.07 0.86 7.34 -51.93 -0.38 0.47 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 45 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.68 7.40 -51.93 -0.38 0.29 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.80 7.75 -51.93 -0.40 0.39 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -29.66 384.86 -9.48 -39.14 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.10 Total: 6.50 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -2.05 Total: -24.27 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.21 Total: -32.96 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.32 Total: -9.65 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.66 -9.48 -39.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776743456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.627 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds