Wall clock time and date at job start Tue Mar 31 2020 13:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 C 1.52998 * 109.47265 * 120.00253 * 2 1 3 5 5 H 1.08997 * 109.47975 * 60.02168 * 4 2 1 6 6 C 1.53092 * 109.48060 * 180.02562 * 4 2 1 7 7 C 1.53182 * 109.16277 * 177.58671 * 6 4 2 8 8 H 1.09002 * 109.61262 * 183.10817 * 7 6 4 9 9 N 1.46903 * 109.54007 * 62.89035 * 7 6 4 10 10 C 1.46903 * 111.00043 * 155.44344 * 9 7 6 11 11 C 1.50700 * 109.47015 * 179.97438 * 10 9 7 12 12 C 1.38296 * 119.92878 * 269.72739 * 11 10 9 13 13 C 1.38101 * 120.06668 * 179.72736 * 12 11 10 14 14 C 1.38879 * 119.93007 * 0.56393 * 13 12 11 15 15 O 1.35749 * 120.07099 * 179.68271 * 14 13 12 16 16 C 1.34833 * 116.99947 * 174.49279 * 15 14 13 17 17 H 1.07991 * 120.00247 * 5.05738 * 16 15 14 18 18 C 1.38653 * 119.99620 * 185.05829 * 16 15 14 19 19 N 1.31559 * 120.00317 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99771 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47131 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47143 * 120.00191 * 20 18 16 23 23 H 1.48502 * 109.47098 * 239.99704 * 20 18 16 24 24 C 1.38887 * 119.86081 * 359.71041 * 14 13 12 25 25 C 1.38097 * 119.92934 * 359.97438 * 24 14 13 26 26 C 1.53172 * 109.03639 * 303.02313 * 7 6 4 27 27 C 1.53085 * 109.16891 * 56.97989 * 26 7 6 28 28 O 1.42908 * 109.41425 * 302.39056 * 27 26 7 29 29 H 1.09002 * 109.46954 * 59.99822 * 1 2 3 30 30 H 1.09001 * 109.47008 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46652 * 300.00029 * 1 2 3 32 32 H 1.09004 * 109.47228 * 240.00463 * 2 1 3 33 33 H 1.09002 * 109.47367 * 299.99925 * 3 2 1 34 34 H 1.08992 * 109.47109 * 60.00316 * 3 2 1 35 35 H 1.08999 * 109.47268 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.52711 * 297.49608 * 6 4 2 37 37 H 1.09004 * 109.52071 * 57.68513 * 6 4 2 38 38 H 1.00897 * 111.00251 * 31.48533 * 9 7 6 39 39 H 1.08998 * 109.46503 * 299.99992 * 10 9 7 40 40 H 1.08998 * 109.46890 * 59.99459 * 10 9 7 41 41 H 1.08001 * 119.97018 * 359.97438 * 12 11 10 42 42 H 1.07998 * 120.03632 * 180.27118 * 13 12 11 43 43 H 0.97000 * 120.00109 * 180.02562 * 19 18 16 44 44 H 1.07996 * 120.03073 * 179.97438 * 24 14 13 45 45 H 1.07995 * 119.96133 * 180.02562 * 25 24 14 46 46 H 1.09001 * 109.52385 * 297.06840 * 26 7 6 47 47 H 1.09004 * 109.52194 * 176.88643 * 26 7 6 48 48 H 1.08999 * 109.48620 * 182.40683 * 27 26 7 49 49 H 1.09003 * 109.48968 * 62.37256 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6771 -1.7491 1.2491 6 6 3.5710 -0.7208 1.2497 7 6 4.0736 -1.3910 2.5322 8 1 5.1621 -1.3455 2.5663 9 7 3.6394 -2.7942 2.5560 10 6 4.5283 -3.6062 3.3978 11 6 4.0519 -5.0359 3.3982 12 6 3.1473 -5.4615 4.3537 13 6 2.7046 -6.7696 4.3534 14 6 3.1778 -7.6610 3.3993 15 8 2.7494 -8.9492 3.4003 16 6 3.1587 -9.7311 2.3809 17 1 3.8629 -9.3494 1.6566 18 6 2.6752 -11.0252 2.2626 19 7 1.8176 -11.4903 3.1452 20 14 3.2416 -12.1083 0.8499 21 1 4.1999 -11.3548 0.0019 22 1 3.9062 -13.3208 1.3914 23 1 2.0683 -12.5100 0.0330 24 6 4.0906 -7.2319 2.4445 25 6 4.5244 -5.9209 2.4462 26 6 3.4916 -0.6539 3.7422 27 6 1.9638 -0.6569 3.6455 28 8 1.5644 -0.0473 2.4162 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 3.9357 -1.2726 0.3834 37 1 3.9349 0.3058 1.2085 38 1 3.5823 -3.1710 1.6217 39 1 5.5433 -3.5610 3.0032 40 1 4.5170 -3.2194 4.4167 41 1 2.7836 -4.7692 5.0986 42 1 1.9948 -7.1003 5.0971 43 1 1.4797 -12.3958 3.0626 44 1 4.4607 -7.9229 1.7016 45 1 5.2339 -5.5866 1.7038 46 1 3.8540 0.3741 3.7514 47 1 3.7995 -1.1578 4.6584 48 1 1.5454 -0.0967 4.4817 49 1 1.5994 -1.6837 3.6771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776743456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:09 Heat of formation + Delta-G solvation = -82.937929 kcal Electronic energy + Delta-G solvation = -26840.482540 eV Core-core repulsion = 23152.654883 eV Total energy + Delta-G solvation = -3687.827657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94997 -40.62869 -38.60661 -36.90687 -35.87130 -34.35048 -33.02327 -31.76860 -31.00320 -30.09613 -27.97297 -27.48141 -25.88790 -24.96800 -24.41833 -23.59900 -21.94314 -21.11419 -20.18431 -19.83575 -18.86095 -17.30433 -16.91664 -16.79817 -16.39314 -16.29578 -15.95961 -15.81390 -15.69223 -15.47439 -15.18993 -14.84514 -14.55298 -14.35307 -14.21325 -14.06964 -13.80240 -13.56564 -13.29416 -13.17706 -12.94907 -12.91496 -12.73616 -12.52082 -12.38442 -12.29502 -12.12308 -12.11426 -11.94174 -11.70641 -11.56378 -11.33856 -11.16951 -10.94149 -10.79951 -10.28680 -9.76591 -9.26678 -8.89056 -8.47473 -6.15618 0.61592 0.68879 1.34468 1.42867 1.52875 2.17195 2.78703 2.99883 3.10655 3.45089 3.53457 3.71010 3.91754 4.00267 4.05692 4.10825 4.14159 4.21688 4.23248 4.31622 4.42493 4.48816 4.57146 4.62675 4.68205 4.75781 4.79043 4.81530 4.86498 4.89067 4.95740 5.01064 5.05400 5.09340 5.11010 5.15536 5.16186 5.19491 5.28698 5.31519 5.34348 5.50127 5.58362 5.59198 5.72383 5.82583 6.03209 6.13477 6.26673 6.47580 6.49181 6.97446 7.79150 8.76192 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.002489 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.604769 B =11245.225183 C =11860.823087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.139 4.139 4 C 0.102 3.898 5 H 0.048 0.952 6 C -0.146 4.146 7 C 0.084 3.916 8 H 0.055 0.945 9 N -0.686 5.686 10 C 0.125 3.875 11 C -0.155 4.155 12 C -0.047 4.047 13 C -0.207 4.207 14 C 0.113 3.887 15 O -0.234 6.234 16 C -0.412 4.412 17 H 0.102 0.898 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.243 4.243 25 C -0.062 4.062 26 C -0.137 4.137 27 C 0.068 3.932 28 O -0.390 6.390 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.342 0.658 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.138 0.862 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.209 25.804 -5.280 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.197 4.197 4 C 0.044 3.956 5 H 0.066 0.934 6 C -0.184 4.184 7 C -0.025 4.025 8 H 0.072 0.928 9 N -0.318 5.318 10 C -0.004 4.004 11 C -0.156 4.156 12 C -0.065 4.065 13 C -0.226 4.226 14 C 0.063 3.937 15 O -0.141 6.141 16 C -0.488 4.488 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.174 1.174 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.262 4.262 25 C -0.080 4.080 26 C -0.175 4.175 27 C -0.009 4.009 28 O -0.310 6.310 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.161 0.839 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.160 0.840 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.156 0.844 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.110 0.890 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.393 25.792 -4.588 26.563 hybrid contribution 0.775 -1.505 -0.748 1.851 sum 5.168 24.287 -5.336 25.398 Atomic orbital electron populations 1.21742 0.95127 1.01322 1.01815 1.21221 0.96285 0.97394 0.96015 1.21767 1.01075 0.95119 1.01690 1.22006 0.92798 0.95175 0.85619 0.93360 1.22410 0.96437 1.02240 0.97345 1.21593 0.97605 0.87851 0.95495 0.92754 1.60556 1.52651 1.01534 1.17078 1.20632 0.93286 0.87653 0.98784 1.19616 1.01847 0.96136 0.98024 1.20819 0.94818 0.92938 0.97971 1.20465 1.06215 0.94212 1.01748 1.19952 0.93496 0.85060 0.95221 1.83945 1.66558 1.17466 1.46144 1.21850 1.26994 0.94827 1.05120 0.88119 1.26601 0.96035 0.97933 1.01597 1.70194 1.31113 1.17745 1.36989 0.84524 0.78497 0.77254 0.75888 1.17403 1.19331 1.19385 1.21220 1.03747 0.98435 1.02779 1.20938 0.98028 0.91428 0.97631 1.22109 0.96564 1.00400 0.98438 1.22453 0.94354 0.97999 0.86100 1.87839 1.75222 1.53914 1.14028 0.91917 0.93585 0.93026 0.89478 0.92290 0.93047 0.92024 0.90309 0.89521 0.83939 0.93781 0.89920 0.84029 0.87276 0.91864 0.86551 0.84437 0.90638 0.90760 0.89037 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.05 71.98 0.65 -1.78 16 2 C -0.09 -1.42 2.81 -10.79 -0.03 -1.46 16 3 C -0.14 -1.93 8.70 71.98 0.63 -1.30 16 4 C 0.10 1.84 2.22 30.62 0.07 1.91 16 5 H 0.05 1.06 7.75 -2.39 -0.02 1.04 16 6 C -0.15 -2.15 4.52 30.69 0.14 -2.01 16 7 C 0.08 1.33 2.85 45.03 0.13 1.46 16 8 H 0.05 0.80 7.81 -2.39 -0.02 0.78 16 9 N -0.69 -13.41 5.08 -494.95 -2.52 -15.92 16 10 C 0.12 2.62 5.61 85.56 0.48 3.10 16 11 C -0.16 -4.60 5.40 -19.84 -0.11 -4.71 16 12 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 13 C -0.21 -8.92 9.99 22.39 0.22 -8.70 16 14 C 0.11 5.67 6.65 22.58 0.15 5.82 16 15 O -0.23 -14.28 9.76 -22.76 -0.22 -14.50 16 16 C -0.41 -24.16 9.49 67.92 0.64 -23.51 16 17 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 18 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 19 N -0.92 -57.13 13.67 21.61 0.30 -56.84 16 20 Si 1.02 43.04 29.55 68.60 2.03 45.07 16 21 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.24 -10.46 9.17 22.39 0.21 -10.26 16 25 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 26 C -0.14 -2.15 5.74 30.68 0.18 -1.98 16 27 C 0.07 1.28 6.68 72.01 0.48 1.76 16 28 O -0.39 -8.14 9.06 -148.98 -1.35 -9.49 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.99 7.68 -2.38 -0.02 0.97 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.84 7.68 -2.39 -0.02 0.82 16 35 H 0.06 0.75 6.38 -2.39 -0.02 0.73 16 36 H 0.08 1.03 8.07 -2.39 -0.02 1.01 16 37 H 0.09 1.16 6.31 -2.38 -0.02 1.15 16 38 H 0.34 6.90 8.32 -89.70 -0.75 6.16 16 39 H 0.04 0.83 8.00 -2.39 -0.02 0.81 16 40 H 0.08 1.61 7.34 -2.39 -0.02 1.59 16 41 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 42 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 45 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 1.14 7.40 -2.39 -0.02 1.12 16 48 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.05 1.07 7.75 -2.39 -0.02 1.05 16 Total: -1.00 -69.39 384.86 3.16 -66.23 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.19 Total: 31.20 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 4.73 Total: -45.75 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -2.22 Total: -72.76 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -1.57 Total: -23.99 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.39 3.16 -66.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776743456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.707 kcal (2) G-P(sol) polarization free energy of solvation -69.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds