Wall clock time and date at job start Tue Mar 31 2020 12:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 C 1.53005 * 109.47247 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47425 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.46911 * 54.99974 * 5 4 3 7 7 C 1.53002 * 109.47054 * 174.99649 * 5 4 3 8 8 O 1.42899 * 109.47180 * 55.00449 * 7 5 4 9 9 C 1.42897 * 114.00267 * 180.02562 * 8 7 5 10 10 N 1.46498 * 109.47234 * 294.99726 * 5 4 3 11 11 C 1.34773 * 120.00014 * 154.99489 * 10 5 4 12 12 O 1.21283 * 120.00081 * 0.02562 * 11 10 5 13 13 C 1.50698 * 120.00215 * 180.02562 * 11 10 5 14 14 C 1.50700 * 109.47288 * 180.02562 * 13 11 10 15 15 C 1.37638 * 120.12991 * 264.99889 * 14 13 11 16 16 C 1.38605 * 120.25211 * 179.97438 * 15 14 13 17 17 C 1.38667 * 120.50046 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.24561 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12708 * 84.72990 * 14 13 11 20 20 C 1.41393 * 120.24366 * 359.97438 * 19 14 13 21 21 H 1.08002 * 120.00539 * 333.90245 * 20 19 14 22 22 C 1.39952 * 120.00095 * 153.90122 * 20 19 14 23 23 N 1.30823 * 119.99749 * 343.71351 * 22 20 19 24 24 Si 1.86803 * 119.99977 * 163.70611 * 22 20 19 25 25 H 1.48500 * 109.46927 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46806 * 120.00195 * 24 22 20 27 27 H 1.48497 * 109.47348 * 240.00255 * 24 22 20 28 28 H 1.08999 * 109.47211 * 300.00449 * 1 2 3 29 29 H 1.09002 * 109.47192 * 60.00362 * 1 2 3 30 30 H 1.08997 * 109.47024 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47216 * 240.00092 * 2 1 3 32 32 H 1.09002 * 109.47192 * 119.99638 * 2 1 3 33 33 H 1.08999 * 109.47540 * 59.99752 * 3 2 1 34 34 H 1.08997 * 109.47217 * 299.99477 * 3 2 1 35 35 H 1.08999 * 109.47191 * 59.99369 * 4 3 2 36 36 H 1.09001 * 109.47071 * 300.00168 * 4 3 2 37 37 H 1.09000 * 109.47353 * 295.00160 * 7 5 4 38 38 H 1.09005 * 109.46950 * 175.00204 * 7 5 4 39 39 H 1.08996 * 109.47453 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.46780 * 299.99647 * 9 8 7 41 41 H 1.09001 * 109.47003 * 59.99321 * 9 8 7 42 42 H 0.97003 * 120.00137 * 335.00083 * 10 5 4 43 43 H 1.09004 * 109.47200 * 300.00246 * 13 11 10 44 44 H 1.08997 * 109.47006 * 59.99874 * 13 11 10 45 45 H 1.08003 * 119.87136 * 0.02562 * 15 14 13 46 46 H 1.07998 * 119.75272 * 179.97438 * 16 15 14 47 47 H 1.07996 * 119.87679 * 179.97438 * 17 16 15 48 48 H 1.07995 * 120.12462 * 179.97438 * 18 17 16 49 49 H 0.96996 * 119.99505 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6456 3.4243 0.8406 7 6 5.6048 2.8869 0.1239 8 8 6.1689 2.0827 -0.9140 9 6 7.5961 2.0166 -0.8873 10 7 3.6919 3.5397 -1.2531 11 6 3.5650 4.8805 -1.3012 12 8 3.7724 5.5453 -0.3083 13 6 3.1653 5.5539 -2.5888 14 6 3.0957 7.0442 -2.3758 15 6 1.8941 7.6435 -2.0734 16 6 1.8273 9.0139 -1.8765 17 6 2.9672 9.7964 -1.9819 18 6 4.1790 9.2188 -2.2843 19 6 4.2598 7.8275 -2.4797 20 6 5.5009 7.2220 -2.7837 21 1 5.6724 6.1858 -2.5319 22 6 6.5071 7.9653 -3.4111 23 7 6.2143 9.0963 -3.9998 24 14 8.2683 7.3425 -3.4077 25 1 8.3345 6.0491 -2.6812 26 1 8.7272 7.1481 -4.8066 27 1 9.1430 8.3350 -2.7332 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 5.8903 2.4806 1.0942 38 1 5.9755 3.9081 0.0343 39 1 7.9461 1.3875 -1.7057 40 1 8.0084 3.0196 -0.9976 41 1 7.9225 1.5920 0.0621 42 1 3.5262 3.0080 -2.0474 43 1 3.9033 5.3314 -3.3595 44 1 2.1889 5.1855 -2.9036 45 1 1.0001 7.0436 -1.9885 46 1 0.8802 9.4758 -1.6400 47 1 2.9036 10.8633 -1.8269 48 1 5.0654 9.8302 -2.3663 49 1 6.9117 9.6113 -4.4349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776940541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:34 Heat of formation + Delta-G solvation = -111.203126 kcal Electronic energy + Delta-G solvation = -27460.314983 eV Core-core repulsion = 23771.261655 eV Total energy + Delta-G solvation = -3689.053328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97176 -39.46996 -38.66174 -37.16491 -35.49939 -35.10341 -33.51669 -31.94394 -31.31667 -29.54728 -28.40168 -27.11870 -26.73811 -24.90240 -22.84835 -22.64994 -21.86242 -21.48071 -20.93446 -19.06686 -17.98373 -17.61233 -17.24930 -16.96058 -16.60156 -16.36186 -16.28659 -16.01568 -15.70764 -15.30724 -14.86419 -14.63658 -14.58157 -14.38659 -14.09248 -13.56946 -13.47065 -13.38897 -13.29742 -13.23146 -12.91330 -12.76336 -12.68951 -12.61199 -12.45738 -12.25433 -12.12967 -11.95533 -11.82230 -11.43361 -11.36317 -11.31360 -11.20083 -11.03702 -10.75616 -10.57764 -9.93060 -9.21641 -9.14837 -8.59805 -6.28991 0.99063 1.14101 1.32591 1.46004 1.50290 1.88595 2.18302 2.40556 2.78184 2.86990 3.64476 3.78227 3.98043 4.10929 4.18122 4.28642 4.32293 4.39298 4.42080 4.45980 4.48814 4.52325 4.54379 4.63136 4.66802 4.71618 4.75184 4.81422 4.82603 4.93135 4.97889 5.06862 5.09008 5.13165 5.20654 5.25200 5.37568 5.37756 5.45957 5.55768 5.56793 5.68030 5.78538 6.04876 6.15320 6.17997 6.22326 6.43115 6.71493 6.78529 7.00088 7.12197 7.50818 8.36832 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.004348 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.844243 B = 6437.804197 C = 8549.192806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.119 4.119 4 C -0.106 4.106 5 C 0.150 3.850 6 H 0.082 0.918 7 C 0.050 3.950 8 O -0.393 6.393 9 C 0.026 3.974 10 N -0.712 5.712 11 C 0.519 3.481 12 O -0.575 6.575 13 C -0.071 4.071 14 C -0.185 4.185 15 C -0.092 4.092 16 C -0.241 4.241 17 C -0.118 4.118 18 C -0.194 4.194 19 C 0.096 3.904 20 C -0.481 4.481 21 H 0.068 0.932 22 C 0.036 3.964 23 N -0.827 5.827 24 Si 0.969 3.031 25 H -0.264 1.264 26 H -0.260 1.260 27 H -0.268 1.268 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.019 0.981 39 H 0.102 0.898 40 H 0.022 0.978 41 H 0.058 0.942 42 H 0.411 0.589 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -18.895 4.605 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.156 4.156 4 C -0.144 4.144 5 C 0.045 3.955 6 H 0.100 0.900 7 C -0.027 4.027 8 O -0.312 6.312 9 C -0.070 4.070 10 N -0.365 5.365 11 C 0.307 3.693 12 O -0.454 6.454 13 C -0.110 4.110 14 C -0.187 4.187 15 C -0.110 4.110 16 C -0.260 4.260 17 C -0.136 4.136 18 C -0.214 4.214 19 C 0.094 3.906 20 C -0.510 4.510 21 H 0.086 0.914 22 C -0.178 4.178 23 N -0.453 5.453 24 Si 0.790 3.210 25 H -0.188 1.188 26 H -0.184 1.184 27 H -0.193 1.193 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.037 0.963 39 H 0.121 0.879 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.247 0.753 43 H 0.110 0.890 44 H 0.129 0.871 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.832 -18.340 5.034 19.228 hybrid contribution 1.169 0.534 -0.186 1.299 sum -1.663 -17.806 4.848 18.529 Atomic orbital electron populations 1.21788 0.95908 1.01867 1.01628 1.21489 0.95830 0.95918 1.02448 1.21613 0.94631 0.97486 1.01906 1.21690 0.95699 0.92717 1.04266 1.21073 0.91421 0.95223 0.87747 0.89995 1.22975 0.94901 0.93478 0.91393 1.87796 1.20952 1.69993 1.52481 1.22876 0.80361 1.00596 1.03148 1.45908 1.70572 1.06004 1.13999 1.21047 0.75498 0.82236 0.90479 1.90647 1.51224 1.65159 1.38377 1.20273 1.03493 0.92341 0.94906 1.19549 0.93176 0.94209 1.11719 1.20730 0.96513 0.94763 0.98954 1.20718 0.97683 0.94242 1.13384 1.20947 0.93631 0.98521 1.00528 1.21302 0.96851 0.96160 1.07066 1.17717 0.92677 0.91985 0.88191 1.19605 0.98000 0.98234 1.35208 0.91435 1.26638 1.04499 0.94397 0.92243 1.69886 1.36240 1.13780 1.25422 0.85361 0.77184 0.79235 0.79183 1.18843 1.18401 1.19310 0.93131 0.93025 0.92062 0.91510 0.91534 0.92804 0.92280 0.90104 0.89400 0.90664 0.96275 0.87935 0.95882 0.92386 0.75253 0.88993 0.87076 0.86549 0.86663 0.87700 0.88589 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.66 5.93 30.59 0.18 -1.48 16 3 C -0.12 -2.04 5.10 30.60 0.16 -1.88 16 4 C -0.11 -1.90 4.47 30.59 0.14 -1.77 16 5 C 0.15 3.88 2.37 44.99 0.11 3.98 16 6 H 0.08 2.40 7.58 -2.39 -0.02 2.38 16 7 C 0.05 1.38 5.74 71.98 0.41 1.80 16 8 O -0.39 -10.29 9.87 -148.98 -1.47 -11.76 16 9 C 0.03 0.58 11.01 113.37 1.25 1.82 16 10 N -0.71 -20.58 4.48 -442.54 -1.98 -22.56 16 11 C 0.52 20.29 7.40 87.66 0.65 20.94 16 12 O -0.58 -28.05 15.70 -3.04 -0.05 -28.09 16 13 C -0.07 -2.78 5.18 29.10 0.15 -2.63 16 14 C -0.18 -9.07 4.43 -19.40 -0.09 -9.16 16 15 C -0.09 -4.19 9.66 22.22 0.21 -3.97 16 16 C -0.24 -11.16 10.05 22.46 0.23 -10.93 16 17 C -0.12 -5.92 10.02 22.22 0.22 -5.70 16 18 C -0.19 -10.97 8.69 22.73 0.20 -10.77 16 19 C 0.10 5.40 5.56 -21.29 -0.12 5.29 16 20 C -0.48 -26.63 8.14 23.46 0.19 -26.44 16 21 H 0.07 3.70 6.67 -2.91 -0.02 3.68 16 22 C 0.04 1.90 5.16 85.26 0.44 2.34 16 23 N -0.83 -44.70 10.96 21.83 0.24 -44.46 16 24 Si 0.97 40.09 29.59 68.60 2.03 42.12 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 27 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.10 7.75 -2.39 -0.02 1.08 16 35 H 0.08 1.43 7.73 -2.39 -0.02 1.41 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.41 9.64 8.60 -92.71 -0.80 8.84 16 43 H 0.09 3.68 7.08 -2.38 -0.02 3.66 16 44 H 0.11 3.47 8.05 -2.39 -0.02 3.45 16 45 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 46 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 47 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 48 H 0.10 5.67 6.20 -2.91 -0.02 5.65 16 49 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 Total: -1.00 -69.54 400.58 3.94 -65.60 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: 0.12 Total: 39.10 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 5.04 Total: -39.96 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.74 Total: -67.02 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.52 Total: -39.85 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -69.54 3.94 -65.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776940541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.602 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds