Wall clock time and date at job start Tue Mar 31 2020 12:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99793 * 2 1 4 4 H 1.08996 * 109.47530 * 2.88057 * 3 2 1 5 5 C 1.53003 * 109.46902 * 122.87935 * 3 2 1 6 6 N 1.46493 * 109.47575 * 299.99796 * 5 3 2 7 7 C 1.34771 * 120.00428 * 180.27731 * 6 5 3 8 8 O 1.21278 * 120.00019 * 359.71851 * 7 6 5 9 9 C 1.50700 * 119.99987 * 179.72715 * 7 6 5 10 10 C 1.50710 * 109.46908 * 179.97438 * 9 7 6 11 11 C 1.37639 * 120.12607 * 264.99722 * 10 9 7 12 12 C 1.38612 * 120.24523 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.50455 * 0.02562 * 12 11 10 14 14 C 1.37599 * 120.24514 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12816 * 84.72362 * 10 9 7 16 16 C 1.41396 * 120.24385 * 359.97438 * 15 10 9 17 17 H 1.08003 * 120.00170 * 335.30152 * 16 15 10 18 18 C 1.39949 * 120.00061 * 155.29425 * 16 15 10 19 19 N 1.30826 * 119.99849 * 342.36328 * 18 16 15 20 20 Si 1.86799 * 119.99833 * 162.35388 * 18 16 15 21 21 H 1.48498 * 109.47269 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46924 * 120.00520 * 20 18 16 23 23 H 1.48496 * 109.47344 * 240.00057 * 20 18 16 24 24 C 1.53000 * 109.46712 * 242.87600 * 3 2 1 25 25 C 1.52995 * 109.47517 * 300.91385 * 24 3 2 26 26 C 1.53003 * 109.47071 * 60.91782 * 24 3 2 27 27 C 1.53002 * 109.46883 * 180.91207 * 24 3 2 28 28 H 1.09004 * 109.47373 * 184.17633 * 1 2 3 29 29 H 1.08997 * 109.47245 * 304.18126 * 1 2 3 30 30 H 1.08998 * 109.46792 * 64.18063 * 1 2 3 31 31 H 1.08998 * 109.47130 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47130 * 60.00071 * 5 3 2 33 33 H 0.97010 * 119.99972 * 0.02562 * 6 5 3 34 34 H 1.09003 * 109.47323 * 299.99126 * 9 7 6 35 35 H 1.08993 * 109.47618 * 60.00029 * 9 7 6 36 36 H 1.08002 * 119.87682 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.74641 * 180.02562 * 12 11 10 38 38 H 1.07997 * 119.87532 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.12136 * 179.97438 * 14 13 12 40 40 H 0.96997 * 119.99827 * 180.02562 * 19 18 16 41 41 H 1.09006 * 109.47193 * 60.00098 * 25 24 3 42 42 H 1.09004 * 109.47471 * 179.97438 * 25 24 3 43 43 H 1.09002 * 109.47208 * 300.00431 * 25 24 3 44 44 H 1.09004 * 109.47009 * 59.96525 * 26 24 3 45 45 H 1.08997 * 109.46985 * 179.97438 * 26 24 3 46 46 H 1.08995 * 109.46695 * 299.96955 * 26 24 3 47 47 H 1.09008 * 109.46821 * 60.00692 * 27 24 3 48 48 H 1.08995 * 109.46907 * 179.97438 * 27 24 3 49 49 H 1.08991 * 109.47361 * 300.00719 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2204 2.0549 0.0516 5 6 2.9330 1.4529 1.2115 6 7 2.1593 1.2629 2.4408 7 6 2.7669 1.3538 3.6404 8 8 3.9553 1.5878 3.7020 9 6 1.9696 1.1644 4.9051 10 6 2.8777 1.3144 6.0985 11 6 3.4438 0.2027 6.6799 12 6 4.2798 0.3378 7.7773 13 6 4.5551 1.5913 8.3021 14 6 3.9994 2.7164 7.7377 15 6 3.1546 2.5919 6.6191 16 6 2.5837 3.7416 6.0262 17 1 2.2804 3.7208 4.9898 18 6 2.4116 4.9066 6.7823 19 7 2.4453 4.8494 8.0889 20 14 2.1339 6.5434 5.9259 21 1 2.1384 6.3394 4.4550 22 1 0.8239 7.1045 6.3434 23 1 3.2180 7.4873 6.2985 24 6 2.8184 1.5038 -1.2839 25 6 3.9128 0.4379 -1.3675 26 6 1.8912 1.3790 -2.4946 27 6 3.4593 2.8931 -1.2735 28 1 -0.3634 -1.0250 0.0748 29 1 -0.3633 0.5773 0.8501 30 1 -0.3633 0.4476 -0.9251 31 1 3.3767 2.4485 1.2113 32 1 3.7229 0.7035 1.1598 33 1 1.2088 1.0752 2.3916 34 1 1.1799 1.9143 4.9526 35 1 1.5261 0.1688 4.9094 36 1 3.2365 -0.7785 6.2790 37 1 4.7200 -0.5400 8.2269 38 1 5.2082 1.6849 9.1571 39 1 4.2149 3.6918 8.1484 40 1 2.3256 5.6568 8.6129 41 1 3.4561 -0.5518 -1.3749 42 1 4.4883 0.5790 -2.2824 43 1 4.5733 0.5269 -0.5050 44 1 1.1113 2.1381 -2.4347 45 1 2.4669 1.5208 -3.4092 46 1 1.4350 0.3892 -2.5022 47 1 4.1199 2.9820 -0.4110 48 1 4.0354 3.0342 -2.1879 49 1 2.6797 3.6525 -1.2139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776977967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:09 Heat of formation + Delta-G solvation = -84.335639 kcal Electronic energy + Delta-G solvation = -27526.199549 eV Core-core repulsion = 23838.311283 eV Total energy + Delta-G solvation = -3687.888266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.87295 -38.73256 -37.19769 -35.96997 -33.98118 -33.58368 -31.67554 -29.46507 -29.22683 -27.55853 -27.35169 -26.88714 -25.99088 -24.90392 -22.94822 -20.88333 -20.50913 -19.50500 -18.83760 -17.15171 -16.81744 -16.50476 -16.25765 -15.44004 -15.35690 -14.74378 -14.63015 -14.39799 -14.00365 -13.87928 -13.81472 -13.50851 -13.39927 -12.86281 -12.76496 -12.54966 -12.42650 -12.11848 -12.04104 -11.72689 -11.66210 -11.53399 -11.46817 -11.27111 -11.11633 -10.95308 -10.93389 -10.81175 -10.65124 -10.63562 -10.35211 -9.68988 -9.43125 -9.32602 -9.11623 -9.05062 -8.59721 -7.26171 -7.24148 -6.70501 -4.29127 2.81324 3.02563 3.09024 3.14026 3.30869 3.42850 3.54675 3.69710 3.96095 4.48672 4.58575 4.69712 4.70589 4.95041 5.04133 5.13435 5.23059 5.31005 5.41005 5.48153 5.50508 5.56113 5.59139 5.66665 5.74835 5.81924 5.84954 5.89137 5.95981 5.99497 6.09375 6.19562 6.23458 6.25770 6.35029 6.48567 6.57151 6.84810 6.87251 7.01308 7.12608 7.35721 7.48192 7.69499 7.95067 8.03006 8.13489 8.19129 8.36799 8.70114 8.95054 8.96916 9.07175 10.23400 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.003634 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.478495 B = 7702.202481 C = 8855.157989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.088 3.912 4 H 0.068 0.932 5 C 0.110 3.890 6 N -0.742 5.742 7 C 0.515 3.485 8 O -0.521 6.521 9 C -0.071 4.071 10 C -0.180 4.180 11 C -0.081 4.081 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.162 4.162 15 C 0.128 3.872 16 C -0.455 4.455 17 H 0.074 0.926 18 C 0.077 3.923 19 N -0.794 5.794 20 Si 0.902 3.098 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.272 1.272 24 C -0.074 4.074 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.149 4.149 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.392 0.608 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.279 0.721 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -4.494 -17.404 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.030 3.970 4 H 0.086 0.914 5 C -0.014 4.014 6 N -0.396 5.396 7 C 0.302 3.698 8 O -0.395 6.395 9 C -0.110 4.110 10 C -0.182 4.182 11 C -0.099 4.099 12 C -0.260 4.260 13 C -0.126 4.126 14 C -0.181 4.181 15 C 0.126 3.874 16 C -0.485 4.485 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.420 5.420 20 Si 0.726 3.274 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.197 1.197 24 C -0.075 4.075 25 C -0.198 4.198 26 C -0.197 4.197 27 C -0.206 4.206 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.225 0.775 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.390 -4.332 -17.137 18.213 hybrid contribution -0.816 0.947 -0.348 1.298 sum -5.206 -3.385 -17.486 18.556 Atomic orbital electron populations 1.22889 0.81365 1.02792 0.99872 1.87956 1.19195 1.27190 1.94869 1.22440 0.95401 0.85197 0.93976 0.91368 1.21700 0.94668 1.02283 0.82740 1.46025 1.12334 1.75647 1.05581 1.21203 0.88657 0.75471 0.84460 1.90674 1.15787 1.46089 1.86980 1.20263 0.98309 1.01958 0.90518 1.19046 1.05665 0.93558 0.99916 1.20303 0.97524 0.95930 0.96173 1.20299 1.07781 0.95938 1.01952 1.20669 0.99675 0.93489 0.98722 1.21303 0.99826 0.97339 0.99632 1.17332 0.88602 0.90935 0.90518 1.19503 1.35983 0.95180 0.97843 0.90781 1.25880 0.92803 1.00803 0.94530 1.69839 1.35912 1.30286 1.05923 0.86371 0.78462 0.81657 0.80882 1.18564 1.20075 1.19702 1.20796 0.96082 0.96399 0.94245 1.21854 0.97572 0.98685 1.01645 1.21841 0.98950 1.01882 0.96989 1.21991 1.00887 0.95094 1.02646 0.89628 0.93977 0.94131 0.90555 0.90878 0.77485 0.88745 0.90694 0.89782 0.89708 0.89629 0.86488 0.91059 0.91792 0.92924 0.92128 0.93053 0.92474 0.92094 0.91622 0.92123 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.67 101.05 1.08 1.30 16 2 O -0.37 -4.01 8.74 -35.23 -0.31 -4.32 16 3 C 0.09 0.93 1.59 -26.73 -0.04 0.89 16 4 H 0.07 0.67 7.60 -51.93 -0.39 0.27 16 5 C 0.11 1.53 4.66 -4.04 -0.02 1.51 16 6 N -0.74 -11.40 5.45 -60.30 -0.33 -11.73 16 7 C 0.51 10.37 7.45 -10.99 -0.08 10.29 16 8 O -0.52 -12.86 16.03 5.56 0.09 -12.77 16 9 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 10 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 11 C -0.08 -1.92 9.66 -39.66 -0.38 -2.31 16 12 C -0.24 -5.74 10.05 -39.29 -0.39 -6.14 16 13 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 14 C -0.16 -4.41 8.70 -38.88 -0.34 -4.74 16 15 C 0.13 3.50 5.58 -106.83 -0.60 2.90 16 16 C -0.46 -12.14 8.17 -37.74 -0.31 -12.45 16 17 H 0.07 1.93 6.63 -52.48 -0.35 1.58 16 18 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 19 N -0.79 -20.67 10.94 55.55 0.61 -20.06 16 20 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.07 -0.70 0.63 -154.51 -0.10 -0.79 16 25 C -0.14 -1.38 7.99 37.16 0.30 -1.08 16 26 C -0.14 -1.11 8.34 37.16 0.31 -0.80 16 27 C -0.15 -1.36 8.10 37.16 0.30 -1.06 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.31 7.60 -51.93 -0.39 -0.09 16 30 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 31 H 0.08 1.13 6.41 -51.93 -0.33 0.79 16 32 H 0.07 1.11 6.45 -51.93 -0.33 0.78 16 33 H 0.39 4.92 7.78 -40.82 -0.32 4.61 16 34 H 0.09 1.85 7.06 -51.93 -0.37 1.49 16 35 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 36 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.08 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 3.26 6.15 -52.48 -0.32 2.94 16 40 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 41 H 0.06 0.66 7.66 -51.93 -0.40 0.27 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.66 6.45 -51.93 -0.33 0.33 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 47 H 0.06 0.67 6.41 -51.92 -0.33 0.34 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -31.43 389.80 -8.52 -39.96 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -8.06 Total: 9.25 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.37 Total: -20.15 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.28 Total: -31.79 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.22 Total: -17.09 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.43 -8.52 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776977967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.379 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds