Wall clock time and date at job start Tue Mar 31 2020 12:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99793 * 2 1 4 4 H 1.08996 * 109.47530 * 2.88057 * 3 2 1 5 5 C 1.53003 * 109.46902 * 122.87935 * 3 2 1 6 6 N 1.46493 * 109.47575 * 299.99796 * 5 3 2 7 7 C 1.34771 * 120.00428 * 180.27731 * 6 5 3 8 8 O 1.21278 * 120.00019 * 359.71851 * 7 6 5 9 9 C 1.50700 * 119.99987 * 179.72715 * 7 6 5 10 10 C 1.50710 * 109.46908 * 179.97438 * 9 7 6 11 11 C 1.37639 * 120.12607 * 264.99722 * 10 9 7 12 12 C 1.38612 * 120.24523 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.50455 * 0.02562 * 12 11 10 14 14 C 1.37599 * 120.24514 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12816 * 84.72362 * 10 9 7 16 16 C 1.41396 * 120.24385 * 359.97438 * 15 10 9 17 17 H 1.08003 * 120.00170 * 335.30152 * 16 15 10 18 18 C 1.39949 * 120.00061 * 155.29425 * 16 15 10 19 19 N 1.30826 * 119.99849 * 342.36328 * 18 16 15 20 20 Si 1.86799 * 119.99833 * 162.35388 * 18 16 15 21 21 H 1.48498 * 109.47269 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46924 * 120.00520 * 20 18 16 23 23 H 1.48496 * 109.47344 * 240.00057 * 20 18 16 24 24 C 1.53000 * 109.46712 * 242.87600 * 3 2 1 25 25 C 1.52995 * 109.47517 * 300.91385 * 24 3 2 26 26 C 1.53003 * 109.47071 * 60.91782 * 24 3 2 27 27 C 1.53002 * 109.46883 * 180.91207 * 24 3 2 28 28 H 1.09004 * 109.47373 * 184.17633 * 1 2 3 29 29 H 1.08997 * 109.47245 * 304.18126 * 1 2 3 30 30 H 1.08998 * 109.46792 * 64.18063 * 1 2 3 31 31 H 1.08998 * 109.47130 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47130 * 60.00071 * 5 3 2 33 33 H 0.97010 * 119.99972 * 0.02562 * 6 5 3 34 34 H 1.09003 * 109.47323 * 299.99126 * 9 7 6 35 35 H 1.08993 * 109.47618 * 60.00029 * 9 7 6 36 36 H 1.08002 * 119.87682 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.74641 * 180.02562 * 12 11 10 38 38 H 1.07997 * 119.87532 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.12136 * 179.97438 * 14 13 12 40 40 H 0.96997 * 119.99827 * 180.02562 * 19 18 16 41 41 H 1.09006 * 109.47193 * 60.00098 * 25 24 3 42 42 H 1.09004 * 109.47471 * 179.97438 * 25 24 3 43 43 H 1.09002 * 109.47208 * 300.00431 * 25 24 3 44 44 H 1.09004 * 109.47009 * 59.96525 * 26 24 3 45 45 H 1.08997 * 109.46985 * 179.97438 * 26 24 3 46 46 H 1.08995 * 109.46695 * 299.96955 * 26 24 3 47 47 H 1.09008 * 109.46821 * 60.00692 * 27 24 3 48 48 H 1.08995 * 109.46907 * 179.97438 * 27 24 3 49 49 H 1.08991 * 109.47361 * 300.00719 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2204 2.0549 0.0516 5 6 2.9330 1.4529 1.2115 6 7 2.1593 1.2629 2.4408 7 6 2.7669 1.3538 3.6404 8 8 3.9553 1.5878 3.7020 9 6 1.9696 1.1644 4.9051 10 6 2.8777 1.3144 6.0985 11 6 3.4438 0.2027 6.6799 12 6 4.2798 0.3378 7.7773 13 6 4.5551 1.5913 8.3021 14 6 3.9994 2.7164 7.7377 15 6 3.1546 2.5919 6.6191 16 6 2.5837 3.7416 6.0262 17 1 2.2804 3.7208 4.9898 18 6 2.4116 4.9066 6.7823 19 7 2.4453 4.8494 8.0889 20 14 2.1339 6.5434 5.9259 21 1 2.1384 6.3394 4.4550 22 1 0.8239 7.1045 6.3434 23 1 3.2180 7.4873 6.2985 24 6 2.8184 1.5038 -1.2839 25 6 3.9128 0.4379 -1.3675 26 6 1.8912 1.3790 -2.4946 27 6 3.4593 2.8931 -1.2735 28 1 -0.3634 -1.0250 0.0748 29 1 -0.3633 0.5773 0.8501 30 1 -0.3633 0.4476 -0.9251 31 1 3.3767 2.4485 1.2113 32 1 3.7229 0.7035 1.1598 33 1 1.2088 1.0752 2.3916 34 1 1.1799 1.9143 4.9526 35 1 1.5261 0.1688 4.9094 36 1 3.2365 -0.7785 6.2790 37 1 4.7200 -0.5400 8.2269 38 1 5.2082 1.6849 9.1571 39 1 4.2149 3.6918 8.1484 40 1 2.3256 5.6568 8.6129 41 1 3.4561 -0.5518 -1.3749 42 1 4.4883 0.5790 -2.2824 43 1 4.5733 0.5269 -0.5050 44 1 1.1113 2.1381 -2.4347 45 1 2.4669 1.5208 -3.4092 46 1 1.4350 0.3892 -2.5022 47 1 4.1199 2.9820 -0.4110 48 1 4.0354 3.0342 -2.1879 49 1 2.6797 3.6525 -1.2139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776977967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:08 Heat of formation + Delta-G solvation = -102.679617 kcal Electronic energy + Delta-G solvation = -27526.995003 eV Core-core repulsion = 23838.311283 eV Total energy + Delta-G solvation = -3688.683721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.04080 -40.07504 -38.98608 -36.71564 -35.50819 -35.37024 -33.44428 -31.35091 -30.41635 -28.44276 -28.24204 -28.01232 -27.10351 -26.60026 -24.00126 -22.81752 -22.11598 -21.07965 -19.78907 -19.06958 -17.94851 -17.60028 -17.48003 -17.15236 -16.45889 -16.24238 -16.15066 -15.56056 -15.29631 -15.28157 -14.84558 -14.66304 -14.50317 -14.38142 -14.16084 -14.03280 -13.51165 -13.36457 -13.10311 -12.94014 -12.90866 -12.76998 -12.73777 -12.63784 -12.48926 -12.44766 -12.19862 -12.11136 -12.00737 -11.55364 -11.44937 -11.31845 -11.20861 -11.01186 -10.84341 -10.37120 -9.98632 -9.23241 -9.15848 -8.59904 -6.28204 0.99488 1.13822 1.35693 1.49118 1.52856 1.85090 2.19881 2.35190 2.77716 2.78650 3.65771 3.73696 3.83107 3.91066 4.14788 4.16715 4.28519 4.39918 4.45236 4.47942 4.53816 4.61039 4.63108 4.64161 4.71854 4.76672 4.79416 4.81026 4.87653 4.94100 4.95542 5.05822 5.06807 5.08355 5.15882 5.20326 5.29369 5.37949 5.45158 5.47926 5.55694 5.57533 5.77953 6.04780 6.17601 6.22394 6.26465 6.42659 6.64957 6.75500 6.99920 7.12209 7.44842 8.36594 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.003634 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.478495 B = 7702.202481 C = 8855.157989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.389 6.389 3 C 0.098 3.902 4 H 0.082 0.918 5 C 0.109 3.891 6 N -0.721 5.721 7 C 0.516 3.484 8 O -0.575 6.575 9 C -0.069 4.069 10 C -0.188 4.188 11 C -0.092 4.092 12 C -0.244 4.244 13 C -0.117 4.117 14 C -0.197 4.197 15 C 0.096 3.904 16 C -0.482 4.482 17 H 0.071 0.929 18 C 0.037 3.963 19 N -0.824 5.824 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.270 1.270 24 C -0.073 4.073 25 C -0.138 4.138 26 C -0.134 4.134 27 C -0.149 4.149 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.409 0.591 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.286 0.714 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 -4.876 -19.376 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.308 6.308 3 C 0.039 3.961 4 H 0.100 0.900 5 C -0.015 4.015 6 N -0.374 5.374 7 C 0.304 3.696 8 O -0.453 6.453 9 C -0.109 4.109 10 C -0.190 4.190 11 C -0.110 4.110 12 C -0.264 4.264 13 C -0.135 4.135 14 C -0.216 4.216 15 C 0.094 3.906 16 C -0.511 4.511 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.450 5.450 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.184 1.184 23 H -0.195 1.195 24 C -0.074 4.074 25 C -0.196 4.196 26 C -0.191 4.191 27 C -0.206 4.206 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.245 0.755 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.096 -4.741 -19.131 20.631 hybrid contribution -0.297 0.940 0.274 1.023 sum -6.393 -3.801 -18.857 20.271 Atomic orbital electron populations 1.23098 0.79785 1.03854 1.00937 1.87943 1.20956 1.27010 1.94900 1.22336 0.95209 0.85788 0.92737 0.90012 1.21797 0.95151 1.01158 0.83354 1.45808 1.13174 1.73620 1.04843 1.21152 0.87874 0.74947 0.85663 1.90655 1.17973 1.48922 1.87799 1.20277 0.97478 1.04085 0.89014 1.19526 1.05631 0.92950 1.00891 1.20736 0.97079 0.97151 0.96052 1.20704 1.07371 0.96428 1.01852 1.20945 0.99745 0.93519 0.99310 1.21324 1.01773 0.97369 1.01144 1.17730 0.89234 0.92493 0.91127 1.19655 1.37324 0.96297 0.97870 0.91046 1.26682 0.92138 1.03937 0.95041 1.69894 1.36338 1.31588 1.07228 0.85319 0.78937 0.76972 0.79473 1.18566 1.18377 1.19461 1.20802 0.96065 0.96159 0.94349 1.21826 0.97623 0.98646 1.01457 1.21791 0.98856 1.02127 0.96327 1.21987 1.00931 0.95222 1.02440 0.88606 0.93327 0.92709 0.91654 0.92479 0.75533 0.88409 0.87168 0.86743 0.86760 0.87683 0.88389 0.90332 0.92380 0.91657 0.93946 0.92106 0.91576 0.92221 0.93455 0.90924 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.67 113.37 1.21 1.46 16 2 O -0.39 -7.56 8.74 -148.98 -1.30 -8.86 16 3 C 0.10 1.91 1.59 30.60 0.05 1.95 16 4 H 0.08 1.38 7.60 -2.39 -0.02 1.37 16 5 C 0.11 3.00 4.66 86.38 0.40 3.41 16 6 N -0.72 -21.45 5.45 -463.08 -2.52 -23.97 16 7 C 0.52 20.67 7.45 87.66 0.65 21.32 16 8 O -0.58 -29.01 16.03 -3.02 -0.05 -29.06 16 9 C -0.07 -2.71 5.18 29.10 0.15 -2.56 16 10 C -0.19 -9.29 4.43 -19.40 -0.09 -9.37 16 11 C -0.09 -4.28 9.66 22.22 0.21 -4.07 16 12 C -0.24 -11.46 10.05 22.46 0.23 -11.23 16 13 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 14 C -0.20 -11.10 8.70 22.73 0.20 -10.91 16 15 C 0.10 5.39 5.58 -21.29 -0.12 5.27 16 16 C -0.48 -26.35 8.17 23.46 0.19 -26.16 16 17 H 0.07 3.80 6.63 -2.91 -0.02 3.78 16 18 C 0.04 1.89 5.15 85.26 0.44 2.33 16 19 N -0.82 -44.02 10.94 21.83 0.24 -43.78 16 20 Si 0.97 39.24 29.59 68.60 2.03 41.27 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 C -0.07 -1.25 0.63 -52.18 -0.03 -1.28 16 25 C -0.14 -2.61 7.99 71.98 0.58 -2.04 16 26 C -0.13 -1.77 8.34 71.98 0.60 -1.17 16 27 C -0.15 -2.52 8.10 71.98 0.58 -1.94 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.57 7.60 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.11 -2.39 -0.02 0.55 16 31 H 0.07 1.97 6.41 -2.39 -0.02 1.95 16 32 H 0.06 1.78 6.45 -2.39 -0.02 1.76 16 33 H 0.41 9.42 7.78 -92.70 -0.72 8.70 16 34 H 0.10 3.77 7.06 -2.39 -0.02 3.76 16 35 H 0.11 3.48 8.05 -2.39 -0.02 3.46 16 36 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.10 5.76 6.15 -2.91 -0.02 5.75 16 40 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 41 H 0.06 1.16 7.66 -2.38 -0.02 1.14 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.04 0.94 6.45 -2.39 -0.02 0.93 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.82 7.68 -2.39 -0.02 0.80 16 47 H 0.05 0.97 6.41 -2.38 -0.02 0.96 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -70.23 389.80 4.09 -66.14 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.22 Total: 38.94 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 5.48 Total: -40.67 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -2.28 Total: -67.76 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -1.35 Total: -37.92 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -70.23 4.09 -66.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776977967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.538 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds