Wall clock time and date at job start Tue Mar 31 2020 12:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47551 * 2 1 4 4 C 1.53005 * 109.46901 * 239.99633 * 2 1 3 5 5 O 1.42900 * 109.46917 * 60.00417 * 4 2 1 6 6 C 1.53002 * 109.47300 * 120.00192 * 2 1 3 7 7 C 1.53007 * 109.46855 * 299.99922 * 6 2 1 8 8 C 1.53002 * 109.46855 * 179.97438 * 7 6 2 9 9 N 1.46503 * 109.46820 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.09000 * 109.46626 * 300.00098 * 1 2 3 28 28 H 1.09002 * 109.46741 * 59.99938 * 1 2 3 29 29 H 1.08996 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47350 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46580 * 300.00270 * 3 2 1 32 32 H 1.09000 * 109.46734 * 59.99694 * 3 2 1 33 33 H 1.09007 * 109.46888 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47392 * 300.00364 * 4 2 1 35 35 H 0.96693 * 114.00193 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47287 * 179.97438 * 6 2 1 37 37 H 1.09005 * 109.47160 * 59.99347 * 6 2 1 38 38 H 1.08994 * 109.47317 * 59.99842 * 7 6 2 39 39 H 1.08997 * 109.47023 * 299.99696 * 7 6 2 40 40 H 1.08994 * 109.47287 * 59.99824 * 8 7 6 41 41 H 1.08997 * 109.47057 * 299.99675 * 8 7 6 42 42 H 0.97002 * 120.00149 * 0.02562 * 9 8 7 43 43 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 44 44 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 45 45 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 46 46 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 47 47 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 48 48 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 49 49 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 8 1.5637 -0.0477 -2.4160 6 6 2.0401 -0.7213 1.2492 7 6 1.5301 0.0000 2.4985 8 6 2.0396 -0.7217 3.7477 9 7 1.5517 -0.0307 4.9439 10 6 1.8766 -0.4916 6.1680 11 8 2.5731 -1.4783 6.2792 12 6 1.3743 0.2188 7.3984 13 6 1.8762 -0.4919 8.6289 14 6 1.0915 -1.4375 9.2491 15 6 1.5480 -2.0878 10.3848 16 6 2.8005 -1.7999 10.9052 17 6 3.6047 -0.8628 10.2980 18 6 3.1515 -0.1961 9.1445 19 6 3.9694 0.7683 8.5118 20 1 3.5200 1.5582 7.9282 21 6 5.3611 0.6991 8.6416 22 7 5.9247 -0.4037 9.0628 23 14 6.4139 2.1817 8.2136 24 1 6.8899 2.0627 6.8121 25 1 5.6073 3.4201 8.3589 26 1 7.5812 2.2408 9.1296 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1301 -0.7210 -1.2495 34 1 1.6766 -1.7490 -1.2493 35 1 1.8493 -0.4510 -3.2471 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2493 38 1 0.4401 0.0000 2.4985 39 1 1.8934 1.0276 2.4985 40 1 3.1295 -0.7221 3.7479 41 1 1.6758 -1.7491 3.7475 42 1 0.9943 0.7582 4.8549 43 1 0.2843 0.2194 7.3981 44 1 1.7383 1.2462 7.3988 45 1 0.1145 -1.6701 8.8520 46 1 0.9235 -2.8248 10.8678 47 1 3.1462 -2.3129 11.7904 48 1 4.5801 -0.6404 10.7048 49 1 6.8893 -0.4515 9.1531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777416172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:28 Heat of formation + Delta-G solvation = -97.846503 kcal Electronic energy + Delta-G solvation = -26517.246659 eV Core-core repulsion = 22828.772518 eV Total energy + Delta-G solvation = -3688.474141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.26888 -38.76400 -37.29814 -36.12651 -34.32393 -33.54086 -31.79976 -30.80551 -29.39198 -27.48751 -27.18353 -26.78536 -25.36579 -24.61562 -21.80861 -20.88637 -20.45324 -19.24938 -18.79663 -17.67334 -17.14483 -16.23204 -15.78548 -15.66577 -15.32609 -15.21218 -14.89717 -14.43202 -14.38583 -13.98204 -13.51225 -13.47642 -13.03523 -12.95699 -12.82159 -12.54693 -12.27632 -12.19634 -11.84557 -11.69687 -11.59933 -11.45945 -11.25877 -11.08864 -11.04890 -10.87462 -10.81136 -10.64957 -10.62316 -10.59987 -10.36204 -10.27789 -9.42948 -9.29224 -9.08753 -8.99748 -8.54779 -7.25957 -7.24220 -6.64957 -4.25766 2.84357 3.02580 3.09836 3.13341 3.31211 3.53041 3.68384 3.98286 3.98944 4.50088 4.52331 4.73283 4.74460 4.91587 5.01126 5.18544 5.22315 5.30111 5.34863 5.55792 5.57391 5.59483 5.64112 5.71505 5.76608 5.83944 5.89241 5.94802 6.00809 6.05584 6.12032 6.20153 6.24083 6.30537 6.34897 6.43839 6.58169 6.83144 6.95042 7.17331 7.28925 7.34580 7.48127 7.70292 7.96670 8.05905 8.13807 8.18840 8.38577 8.70899 8.97427 9.05664 9.07446 10.30058 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.002777 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.059781 B =10081.664581 C =11445.173415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.140 4.140 4 C 0.084 3.916 5 O -0.571 6.571 6 C -0.107 4.107 7 C -0.131 4.131 8 C 0.121 3.879 9 N -0.748 5.748 10 C 0.514 3.486 11 O -0.513 6.513 12 C -0.069 4.069 13 C -0.181 4.181 14 C -0.081 4.081 15 C -0.242 4.242 16 C -0.106 4.106 17 C -0.162 4.162 18 C 0.130 3.870 19 C -0.459 4.459 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.790 5.790 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.261 1.261 26 H -0.276 1.276 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.376 0.624 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.393 0.607 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 2.990 -17.871 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.197 4.197 4 C 0.007 3.993 5 O -0.376 6.376 6 C -0.145 4.145 7 C -0.168 4.168 8 C -0.003 4.003 9 N -0.403 5.403 10 C 0.301 3.699 11 O -0.386 6.386 12 C -0.109 4.109 13 C -0.183 4.183 14 C -0.099 4.099 15 C -0.262 4.262 16 C -0.124 4.124 17 C -0.182 4.182 18 C 0.127 3.873 19 C -0.489 4.489 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.416 5.416 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.185 1.185 26 H -0.201 1.201 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.223 0.777 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.226 0.774 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.134 0.866 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.878 2.517 -17.270 18.759 hybrid contribution 0.722 0.417 -0.755 1.125 sum -6.156 2.933 -18.025 19.272 Atomic orbital electron populations 1.21849 0.94010 1.01708 1.02090 1.20567 0.96563 0.96245 0.92928 1.21854 1.00709 0.95077 1.02100 1.22242 0.97150 0.94606 0.85332 1.86465 1.77558 1.57490 1.16043 1.21506 1.01090 0.99255 0.92676 1.21876 1.01421 1.00220 0.93332 1.21199 0.99356 0.96097 0.83629 1.46120 1.55768 1.32662 1.05754 1.21088 0.79933 0.84897 0.83971 1.90704 1.35625 1.25891 1.86340 1.20247 0.99317 1.00112 0.91178 1.19005 0.98291 1.03401 0.97625 1.20287 0.97396 0.96381 0.95844 1.20292 0.97992 1.06453 1.01422 1.20669 0.94560 0.98493 0.98690 1.21275 0.99993 1.00172 0.96742 1.17333 0.89920 0.90281 0.89724 1.19438 0.90626 1.10598 1.28224 0.90759 1.25841 0.98852 0.96070 0.93206 1.69844 1.12088 1.25082 1.34539 0.86422 0.79606 0.82464 0.78940 1.19776 1.18469 1.20072 0.92297 0.92072 0.92979 0.92905 0.92077 0.92257 0.93678 0.93715 0.77724 0.91379 0.91471 0.91064 0.90937 0.91984 0.92232 0.77379 0.90861 0.89103 0.89804 0.89721 0.89641 0.86602 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 7.98 37.16 0.30 -0.86 16 2 C -0.06 -0.52 0.63 -154.50 -0.10 -0.62 16 3 C -0.14 -1.22 7.98 37.16 0.30 -0.92 16 4 C 0.08 0.64 5.91 37.16 0.22 0.86 16 5 O -0.57 -4.43 12.31 -35.23 -0.43 -4.86 16 6 C -0.11 -0.94 4.27 -26.73 -0.11 -1.05 16 7 C -0.13 -1.26 4.62 -26.73 -0.12 -1.38 16 8 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 9 N -0.75 -11.35 5.56 -60.30 -0.33 -11.68 16 10 C 0.51 10.55 7.82 -10.99 -0.09 10.46 16 11 O -0.51 -13.26 16.03 5.56 0.09 -13.17 16 12 C -0.07 -1.36 5.35 -29.04 -0.16 -1.52 16 13 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 14 C -0.08 -1.90 9.66 -39.66 -0.38 -2.29 16 15 C -0.24 -5.76 10.05 -39.29 -0.39 -6.16 16 16 C -0.11 -2.63 10.02 -39.66 -0.40 -3.02 16 17 C -0.16 -4.41 8.68 -38.87 -0.34 -4.75 16 18 C 0.13 3.52 5.56 -106.82 -0.59 2.93 16 19 C -0.46 -12.22 8.46 -37.74 -0.32 -12.54 16 20 H 0.07 1.86 6.36 -52.48 -0.33 1.52 16 21 C 0.08 2.02 5.16 -17.34 -0.09 1.93 16 22 N -0.79 -21.43 10.98 55.55 0.61 -20.82 16 23 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 27 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 28 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 32 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 33 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.38 1.33 9.12 45.56 0.42 1.74 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 39 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.39 4.59 8.47 -40.82 -0.35 4.24 16 43 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 44 H 0.09 1.72 6.48 -51.93 -0.34 1.38 16 45 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 46 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 48 H 0.12 3.22 6.23 -52.49 -0.33 2.89 16 49 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -33.52 391.46 -9.23 -42.75 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -7.26 Total: 10.01 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.76 Total: -22.21 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.27 Total: -32.50 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.34 Total: -18.03 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.52 -9.23 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777416172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.100 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds