Wall clock time and date at job start Tue Mar 31 2020 12:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47551 * 2 1 4 4 C 1.53005 * 109.46901 * 239.99633 * 2 1 3 5 5 O 1.42900 * 109.46917 * 60.00417 * 4 2 1 6 6 C 1.53002 * 109.47300 * 120.00192 * 2 1 3 7 7 C 1.53007 * 109.46855 * 299.99922 * 6 2 1 8 8 C 1.53002 * 109.46855 * 179.97438 * 7 6 2 9 9 N 1.46503 * 109.46820 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.09000 * 109.46626 * 300.00098 * 1 2 3 28 28 H 1.09002 * 109.46741 * 59.99938 * 1 2 3 29 29 H 1.08996 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47350 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46580 * 300.00270 * 3 2 1 32 32 H 1.09000 * 109.46734 * 59.99694 * 3 2 1 33 33 H 1.09007 * 109.46888 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47392 * 300.00364 * 4 2 1 35 35 H 0.96693 * 114.00193 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47287 * 179.97438 * 6 2 1 37 37 H 1.09005 * 109.47160 * 59.99347 * 6 2 1 38 38 H 1.08994 * 109.47317 * 59.99842 * 7 6 2 39 39 H 1.08997 * 109.47023 * 299.99696 * 7 6 2 40 40 H 1.08994 * 109.47287 * 59.99824 * 8 7 6 41 41 H 1.08997 * 109.47057 * 299.99675 * 8 7 6 42 42 H 0.97002 * 120.00149 * 0.02562 * 9 8 7 43 43 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 44 44 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 45 45 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 46 46 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 47 47 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 48 48 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 49 49 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 8 1.5637 -0.0477 -2.4160 6 6 2.0401 -0.7213 1.2492 7 6 1.5301 0.0000 2.4985 8 6 2.0396 -0.7217 3.7477 9 7 1.5517 -0.0307 4.9439 10 6 1.8766 -0.4916 6.1680 11 8 2.5731 -1.4783 6.2792 12 6 1.3743 0.2188 7.3984 13 6 1.8762 -0.4919 8.6289 14 6 1.0915 -1.4375 9.2491 15 6 1.5480 -2.0878 10.3848 16 6 2.8005 -1.7999 10.9052 17 6 3.6047 -0.8628 10.2980 18 6 3.1515 -0.1961 9.1445 19 6 3.9694 0.7683 8.5118 20 1 3.5200 1.5582 7.9282 21 6 5.3611 0.6991 8.6416 22 7 5.9247 -0.4037 9.0628 23 14 6.4139 2.1817 8.2136 24 1 6.8899 2.0627 6.8121 25 1 5.6073 3.4201 8.3589 26 1 7.5812 2.2408 9.1296 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1301 -0.7210 -1.2495 34 1 1.6766 -1.7490 -1.2493 35 1 1.8493 -0.4510 -3.2471 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2493 38 1 0.4401 0.0000 2.4985 39 1 1.8934 1.0276 2.4985 40 1 3.1295 -0.7221 3.7479 41 1 1.6758 -1.7491 3.7475 42 1 0.9943 0.7582 4.8549 43 1 0.2843 0.2194 7.3981 44 1 1.7383 1.2462 7.3988 45 1 0.1145 -1.6701 8.8520 46 1 0.9235 -2.8248 10.8678 47 1 3.1462 -2.3129 11.7904 48 1 4.5801 -0.6404 10.7048 49 1 6.8893 -0.4515 9.1531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777416172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:27 Heat of formation + Delta-G solvation = -120.027536 kcal Electronic energy + Delta-G solvation = -26518.208501 eV Core-core repulsion = 22828.772518 eV Total energy + Delta-G solvation = -3689.435983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.72671 -39.62668 -39.05380 -36.93369 -35.51514 -35.45774 -33.49746 -31.94518 -31.31455 -28.70132 -28.14052 -27.52424 -26.99474 -25.95392 -22.84141 -22.73274 -22.09265 -20.87205 -19.52740 -19.06164 -18.25786 -17.70491 -17.34291 -16.88565 -16.73339 -16.14096 -16.06578 -15.74509 -15.63255 -15.34551 -14.96399 -14.79762 -14.37690 -14.32263 -14.00185 -13.61725 -13.57262 -13.28422 -13.19549 -12.99369 -12.87565 -12.75231 -12.61294 -12.53179 -12.47974 -12.45333 -12.10104 -11.92255 -11.58150 -11.40839 -11.30664 -11.25029 -11.16054 -11.00251 -10.83050 -10.67454 -9.94090 -9.20968 -9.15747 -8.56036 -6.25071 1.01303 1.14525 1.35871 1.48725 1.54542 1.93818 2.21116 2.44263 2.82582 3.33628 3.76798 3.82657 3.85240 4.07952 4.12405 4.18227 4.25658 4.41703 4.45149 4.51198 4.57936 4.59370 4.64273 4.67898 4.73133 4.77943 4.81342 4.81712 4.92890 4.93647 5.04564 5.10543 5.13935 5.20136 5.25874 5.26746 5.31050 5.37983 5.53023 5.55208 5.56723 5.65579 5.80719 6.05792 6.15941 6.23188 6.45223 6.73691 6.80610 6.93200 7.00926 7.13910 7.56027 8.41732 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.002777 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.059781 B =10081.664581 C =11445.173415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 C -0.139 4.139 4 C 0.083 3.917 5 O -0.586 6.586 6 C -0.104 4.104 7 C -0.117 4.117 8 C 0.121 3.879 9 N -0.725 5.725 10 C 0.513 3.487 11 O -0.577 6.577 12 C -0.068 4.068 13 C -0.187 4.187 14 C -0.092 4.092 15 C -0.245 4.245 16 C -0.117 4.117 17 C -0.196 4.196 18 C 0.095 3.905 19 C -0.483 4.483 20 H 0.083 0.917 21 C 0.029 3.971 22 N -0.833 5.833 23 Si 0.975 3.025 24 H -0.270 1.270 25 H -0.248 1.248 26 H -0.270 1.270 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.414 0.586 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 4.162 -19.434 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 C -0.196 4.196 4 C 0.006 3.994 5 O -0.394 6.394 6 C -0.143 4.143 7 C -0.155 4.155 8 C -0.003 4.003 9 N -0.380 5.380 10 C 0.301 3.699 11 O -0.455 6.455 12 C -0.107 4.107 13 C -0.189 4.189 14 C -0.110 4.110 15 C -0.264 4.264 16 C -0.135 4.135 17 C -0.216 4.216 18 C 0.093 3.907 19 C -0.513 4.513 20 H 0.101 0.899 21 C -0.185 4.185 22 N -0.460 5.460 23 Si 0.796 3.204 24 H -0.195 1.195 25 H -0.171 1.171 26 H -0.194 1.194 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.243 0.757 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.251 0.749 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.636 3.728 -18.875 21.089 hybrid contribution 1.142 -0.029 -0.301 1.181 sum -7.494 3.699 -19.177 20.919 Atomic orbital electron populations 1.21823 0.93812 1.01831 1.01942 1.20545 0.96662 0.95991 0.93043 1.21836 1.00528 0.95304 1.01917 1.22228 0.97315 0.94770 0.85118 1.86417 1.77858 1.58131 1.17006 1.21468 1.00871 0.99441 0.92482 1.21793 1.02255 0.99998 0.91408 1.21287 0.98088 0.96326 0.84576 1.45892 1.54617 1.32753 1.04716 1.21179 0.79118 0.84061 0.85522 1.90687 1.38681 1.28778 1.87358 1.20301 1.01722 0.99668 0.89057 1.19519 0.97316 1.03264 0.98820 1.20738 0.98759 0.95808 0.95669 1.20716 0.97688 1.06571 1.01461 1.20945 0.95076 0.98145 0.99375 1.21300 0.99992 1.02246 0.98065 1.17764 0.91595 0.91147 0.90177 1.19716 0.91428 1.11150 1.29010 0.89909 1.26783 1.00049 0.98803 0.92818 1.69943 1.12567 1.27258 1.36185 0.85310 0.77778 0.78783 0.78555 1.19511 1.17107 1.19445 0.91786 0.92854 0.92716 0.93172 0.92777 0.91883 0.93409 0.93018 0.75725 0.91808 0.91144 0.89428 0.90190 0.94301 0.93043 0.74907 0.86698 0.88218 0.86500 0.86749 0.87814 0.88646 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.98 71.98 0.57 -1.40 16 2 C -0.06 -0.92 0.63 -52.18 -0.03 -0.95 16 3 C -0.14 -2.17 7.98 71.98 0.57 -1.60 16 4 C 0.08 1.13 5.91 71.98 0.43 1.55 16 5 O -0.59 -8.15 12.31 -148.98 -1.83 -9.99 16 6 C -0.10 -1.65 4.27 30.60 0.13 -1.52 16 7 C -0.12 -1.98 4.62 30.60 0.14 -1.84 16 8 C 0.12 3.18 5.67 86.38 0.49 3.67 16 9 N -0.73 -20.58 5.56 -463.07 -2.57 -23.16 16 10 C 0.51 20.55 7.82 87.65 0.69 21.24 16 11 O -0.58 -30.26 16.03 -3.04 -0.05 -30.30 16 12 C -0.07 -2.57 5.35 29.10 0.16 -2.41 16 13 C -0.19 -9.09 4.43 -19.40 -0.09 -9.18 16 14 C -0.09 -4.18 9.66 22.22 0.21 -3.96 16 15 C -0.25 -11.38 10.05 22.46 0.23 -11.15 16 16 C -0.12 -5.89 10.02 22.22 0.22 -5.67 16 17 C -0.20 -11.08 8.68 22.73 0.20 -10.88 16 18 C 0.10 5.30 5.56 -21.29 -0.12 5.18 16 19 C -0.48 -26.22 8.46 23.46 0.20 -26.02 16 20 H 0.08 4.15 6.36 -2.91 -0.02 4.14 16 21 C 0.03 1.53 5.16 85.26 0.44 1.97 16 22 N -0.83 -47.03 10.98 21.83 0.24 -46.79 16 23 Si 0.97 39.67 29.59 68.60 2.03 41.70 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 26 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 27 H 0.06 0.84 6.43 -2.39 -0.02 0.82 16 28 H 0.05 0.86 7.68 -2.39 -0.02 0.84 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.92 7.68 -2.38 -0.02 0.91 16 32 H 0.06 0.92 6.43 -2.39 -0.02 0.90 16 33 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.39 2.14 9.12 -74.06 -0.68 1.46 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.09 1.24 6.43 -2.39 -0.02 1.23 16 39 H 0.08 1.28 6.43 -2.39 -0.02 1.26 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.41 8.31 8.47 -92.71 -0.79 7.53 16 43 H 0.11 3.33 8.06 -2.39 -0.02 3.31 16 44 H 0.10 3.59 6.48 -2.39 -0.02 3.57 16 45 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 46 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 47 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 48 H 0.10 5.63 6.23 -2.91 -0.02 5.61 16 49 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 Total: -1.00 -75.58 391.46 1.75 -73.83 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.50 Total: 37.70 kcal Atomic # 6 Polarization: -47.42 SS G_CDS: 4.44 Total: -42.99 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -2.33 Total: -69.95 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.88 Total: -40.29 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -75.58 1.75 -73.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777416172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.199 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds