Wall clock time and date at job start Tue Mar 31 2020 12:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47328 * 2 1 4 4 C 1.52992 * 109.47328 * 179.97438 * 3 2 1 5 5 C 1.53012 * 109.47130 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47276 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99661 * 270.00099 * 6 5 4 8 8 C 1.53003 * 109.46953 * 269.99631 * 7 6 5 9 9 O 1.42897 * 109.46899 * 65.00440 * 8 7 6 10 10 C 1.34776 * 120.00015 * 89.99750 * 6 5 4 11 11 O 1.21280 * 120.00146 * 359.97438 * 10 6 5 12 12 C 1.50697 * 119.99787 * 180.02562 * 10 6 5 13 13 C 1.50705 * 109.46992 * 179.97438 * 12 10 6 14 14 C 1.37631 * 120.12958 * 264.99697 * 13 12 10 15 15 C 1.38614 * 120.25102 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.49630 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.25402 * 0.02562 * 16 15 14 18 18 C 1.40703 * 120.12330 * 84.72968 * 13 12 10 19 19 C 1.41394 * 120.24704 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99576 * 333.89506 * 19 18 13 21 21 C 1.39936 * 120.00084 * 153.89383 * 19 18 13 22 22 N 1.30823 * 120.00218 * 343.71483 * 21 19 18 23 23 Si 1.86806 * 120.00088 * 163.71714 * 21 19 18 24 24 H 1.48505 * 109.47079 * 90.00193 * 23 21 19 25 25 H 1.48502 * 109.47027 * 209.99966 * 23 21 19 26 26 H 1.48497 * 109.46857 * 330.00048 * 23 21 19 27 27 H 1.08999 * 109.47405 * 60.00158 * 1 2 3 28 28 H 1.08995 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47299 * 299.99862 * 1 2 3 30 30 H 1.08999 * 109.47299 * 240.00138 * 2 1 3 31 31 H 1.08999 * 109.47405 * 119.99842 * 2 1 3 32 32 H 1.08999 * 109.46818 * 59.99843 * 3 2 1 33 33 H 1.09002 * 109.47142 * 300.00576 * 3 2 1 34 34 H 1.08999 * 109.47299 * 60.00138 * 4 3 2 35 35 H 1.08999 * 109.47405 * 299.99842 * 4 3 2 36 36 H 1.08999 * 109.47006 * 59.99849 * 5 4 3 37 37 H 1.08999 * 109.46759 * 300.00129 * 5 4 3 38 38 H 1.09000 * 109.47031 * 30.00194 * 7 6 5 39 39 H 1.08999 * 109.46849 * 149.99694 * 7 6 5 40 40 H 1.08995 * 109.46841 * 185.00074 * 8 7 6 41 41 H 1.08998 * 109.47029 * 305.00171 * 8 7 6 42 42 H 0.96700 * 114.00279 * 180.02562 * 9 8 7 43 43 H 1.09000 * 109.47282 * 300.00213 * 12 10 6 44 44 H 1.09007 * 109.47259 * 60.00181 * 12 10 6 45 45 H 1.08005 * 119.87550 * 0.02562 * 14 13 12 46 46 H 1.07995 * 119.75564 * 180.02562 * 15 14 13 47 47 H 1.08005 * 119.87439 * 180.02562 * 16 15 14 48 48 H 1.07993 * 120.12866 * 179.97438 * 17 16 15 49 49 H 0.97001 * 120.00340 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8851 0.0013 6 7 5.5449 2.8852 0.0013 7 6 6.2774 2.8846 1.2701 8 6 6.5324 4.3269 1.7123 9 8 5.2859 4.9656 1.9957 10 6 6.2188 2.8856 -1.1659 11 8 5.6125 2.8856 -2.2162 12 6 7.7258 2.8851 -1.1658 13 6 8.2282 2.8852 -2.5867 14 6 8.5559 1.6993 -3.2036 15 6 9.0177 1.6964 -4.5106 16 6 9.1554 2.8852 -5.2109 17 6 8.8348 4.0827 -4.6138 18 6 8.3586 4.0971 -3.2895 19 6 8.0191 5.3209 -2.6680 20 1 7.2953 5.3370 -1.8666 21 6 8.6208 6.5113 -3.0914 22 7 9.7068 6.4722 -3.8197 23 14 7.8733 8.1561 -2.6165 24 1 8.4556 8.6110 -1.3283 25 1 8.1673 9.1570 -3.6734 26 1 6.4030 8.0078 -2.4703 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9336 0.9286 -0.8891 35 1 3.9329 0.9289 0.8908 36 1 3.7162 3.3987 0.8913 37 1 3.7169 3.3992 -0.8887 38 1 5.6883 2.3704 2.0294 39 1 7.2298 2.3708 1.1395 40 1 7.1530 4.3278 2.6083 41 1 7.0441 4.8663 0.9153 42 1 5.3713 5.8852 2.2823 43 1 8.0895 3.7746 -0.6514 44 1 8.0888 1.9946 -0.6526 45 1 8.4521 0.7674 -2.6677 46 1 9.2722 0.7613 -4.9870 47 1 9.5158 2.8712 -6.2289 48 1 8.9432 5.0074 -5.1609 49 1 10.1237 7.2973 -4.1135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777428925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:52 Heat of formation + Delta-G solvation = -93.178876 kcal Electronic energy + Delta-G solvation = -27566.821755 eV Core-core repulsion = 23878.550017 eV Total energy + Delta-G solvation = -3688.271738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.60146 -37.54932 -36.79992 -36.09623 -34.55728 -33.59114 -32.10032 -31.00255 -29.41549 -28.80854 -27.21114 -25.53887 -24.76339 -22.86107 -22.09335 -21.01367 -20.88452 -19.84333 -18.35667 -17.55865 -17.11808 -16.34027 -16.14192 -15.55625 -15.28260 -15.04871 -14.42798 -14.24205 -13.81430 -13.78777 -13.68533 -13.46336 -13.34846 -12.91729 -12.62835 -12.54898 -12.26703 -11.98792 -11.83961 -11.64778 -11.55405 -11.41130 -11.12375 -11.07773 -11.00813 -10.94161 -10.83252 -10.79026 -10.66435 -10.42334 -10.37691 -9.96996 -9.44610 -9.33665 -9.13198 -9.01629 -8.23258 -7.27140 -7.24986 -6.70799 -4.30947 2.80387 2.99831 3.06989 3.12814 3.29040 3.38514 3.49634 3.95084 4.26621 4.68760 4.79851 4.86802 5.03502 5.04809 5.14255 5.26710 5.30243 5.42127 5.46137 5.58424 5.64120 5.67428 5.70385 5.80287 5.85345 5.92307 5.92750 6.00116 6.01239 6.07505 6.16720 6.21595 6.31728 6.39322 6.44475 6.46494 6.54792 6.83190 6.99461 7.11509 7.33442 7.46085 7.59995 7.67896 7.89455 7.98147 8.11457 8.16859 8.35222 8.68304 8.92911 8.95424 9.05432 10.23321 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.004089 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.553055 B = 6846.810973 C = 8100.672227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.619 5.619 7 C 0.115 3.885 8 C 0.052 3.948 9 O -0.570 6.570 10 C 0.515 3.485 11 O -0.517 6.517 12 C -0.070 4.070 13 C -0.179 4.179 14 C -0.082 4.082 15 C -0.239 4.239 16 C -0.108 4.108 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.073 0.927 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.900 3.100 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.261 1.261 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.376 0.624 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -5.024 12.728 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.172 4.172 5 C -0.002 4.002 6 N -0.354 5.354 7 C -0.010 4.010 8 C -0.027 4.027 9 O -0.375 6.375 10 C 0.304 3.696 11 O -0.391 6.391 12 C -0.110 4.110 13 C -0.181 4.181 14 C -0.100 4.100 15 C -0.258 4.258 16 C -0.126 4.126 17 C -0.178 4.178 18 C 0.127 3.873 19 C -0.485 4.485 20 H 0.091 0.909 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.185 1.185 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.223 0.777 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.134 0.866 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.798 -5.448 11.847 15.730 hybrid contribution 0.083 1.369 0.413 1.432 sum -8.715 -4.079 12.259 15.585 Atomic orbital electron populations 1.21775 0.96110 1.01320 1.01750 1.21520 0.95582 0.97147 1.01912 1.21525 0.95238 0.96606 1.02044 1.21964 0.95173 0.98014 1.02074 1.21355 0.79873 0.95877 1.03082 1.47992 1.06198 1.75583 1.05610 1.21560 0.98049 0.94966 0.86380 1.22801 0.85958 0.94733 0.99231 1.86451 1.30748 1.30025 1.90282 1.21214 0.90858 0.74913 0.82637 1.90669 1.70232 1.47344 1.30849 1.20334 0.90280 1.02328 0.98051 1.19074 1.11345 0.93936 0.93766 1.20290 0.99535 0.95389 0.94806 1.20299 1.13148 0.96215 0.96142 1.20673 1.00769 0.93501 0.97670 1.21291 1.04815 0.96371 0.95356 1.17329 0.87901 0.91380 0.90730 1.19434 1.21120 0.90898 1.17035 0.90937 1.25862 0.93499 1.01125 0.93526 1.69819 1.14286 1.29954 1.28125 0.86449 0.80924 0.81264 0.78927 1.19627 1.20064 1.18511 0.92733 0.93020 0.92886 0.92033 0.92284 0.92131 0.91820 0.91668 0.92442 0.90363 0.90519 0.90264 0.88849 0.93019 0.92429 0.77717 0.88897 0.90851 0.89845 0.89705 0.89620 0.86552 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.15 0.37 -0.94 16 2 C -0.12 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.12 -1.28 5.21 -26.73 -0.14 -1.42 16 4 C -0.13 -1.73 5.54 -26.73 -0.15 -1.87 16 5 C 0.12 1.80 5.23 -4.04 -0.02 1.78 16 6 N -0.62 -9.82 2.44 -173.68 -0.42 -10.24 16 7 C 0.11 1.38 5.62 -4.04 -0.02 1.35 16 8 C 0.05 0.60 7.38 37.16 0.27 0.87 16 9 O -0.57 -6.77 12.48 -35.23 -0.44 -7.21 16 10 C 0.51 10.40 7.28 -10.99 -0.08 10.32 16 11 O -0.52 -12.80 15.61 5.56 0.09 -12.71 16 12 C -0.07 -1.40 3.73 -29.03 -0.11 -1.50 16 13 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 14 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 15 C -0.24 -5.65 10.05 -39.29 -0.39 -6.04 16 16 C -0.11 -2.67 10.02 -39.66 -0.40 -3.06 16 17 C -0.16 -4.31 8.69 -38.87 -0.34 -4.64 16 18 C 0.13 3.49 5.56 -106.82 -0.59 2.89 16 19 C -0.45 -12.05 8.14 -37.75 -0.31 -12.36 16 20 H 0.07 1.89 6.67 -52.49 -0.35 1.54 16 21 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 22 N -0.80 -20.63 10.96 55.55 0.61 -20.02 16 23 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.07 7.12 -51.93 -0.37 0.70 16 37 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 38 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.09 1.00 6.44 -51.93 -0.33 0.66 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.79 7.30 -51.93 -0.38 0.41 16 42 H 0.38 3.04 9.12 45.56 0.42 3.45 16 43 H 0.09 1.80 6.20 -51.93 -0.32 1.48 16 44 H 0.07 1.22 7.31 -51.93 -0.38 0.84 16 45 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 46 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 48 H 0.12 3.23 6.21 -52.49 -0.33 2.91 16 49 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -31.97 395.71 -9.71 -41.68 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.48 Total: 9.95 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -3.00 Total: -21.30 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.19 Total: -30.27 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.35 Total: -19.91 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.97 -9.71 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777428925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.496 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds