Wall clock time and date at job start Tue Mar 31 2020 12:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47328 * 2 1 4 4 C 1.52992 * 109.47328 * 179.97438 * 3 2 1 5 5 C 1.53012 * 109.47130 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47276 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99661 * 270.00099 * 6 5 4 8 8 C 1.53003 * 109.46953 * 269.99631 * 7 6 5 9 9 O 1.42897 * 109.46899 * 65.00440 * 8 7 6 10 10 C 1.34776 * 120.00015 * 89.99750 * 6 5 4 11 11 O 1.21280 * 120.00146 * 359.97438 * 10 6 5 12 12 C 1.50697 * 119.99787 * 180.02562 * 10 6 5 13 13 C 1.50705 * 109.46992 * 179.97438 * 12 10 6 14 14 C 1.37631 * 120.12958 * 264.99697 * 13 12 10 15 15 C 1.38614 * 120.25102 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.49630 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.25402 * 0.02562 * 16 15 14 18 18 C 1.40703 * 120.12330 * 84.72968 * 13 12 10 19 19 C 1.41394 * 120.24704 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99576 * 333.89506 * 19 18 13 21 21 C 1.39936 * 120.00084 * 153.89383 * 19 18 13 22 22 N 1.30823 * 120.00218 * 343.71483 * 21 19 18 23 23 Si 1.86806 * 120.00088 * 163.71714 * 21 19 18 24 24 H 1.48505 * 109.47079 * 90.00193 * 23 21 19 25 25 H 1.48502 * 109.47027 * 209.99966 * 23 21 19 26 26 H 1.48497 * 109.46857 * 330.00048 * 23 21 19 27 27 H 1.08999 * 109.47405 * 60.00158 * 1 2 3 28 28 H 1.08995 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47299 * 299.99862 * 1 2 3 30 30 H 1.08999 * 109.47299 * 240.00138 * 2 1 3 31 31 H 1.08999 * 109.47405 * 119.99842 * 2 1 3 32 32 H 1.08999 * 109.46818 * 59.99843 * 3 2 1 33 33 H 1.09002 * 109.47142 * 300.00576 * 3 2 1 34 34 H 1.08999 * 109.47299 * 60.00138 * 4 3 2 35 35 H 1.08999 * 109.47405 * 299.99842 * 4 3 2 36 36 H 1.08999 * 109.47006 * 59.99849 * 5 4 3 37 37 H 1.08999 * 109.46759 * 300.00129 * 5 4 3 38 38 H 1.09000 * 109.47031 * 30.00194 * 7 6 5 39 39 H 1.08999 * 109.46849 * 149.99694 * 7 6 5 40 40 H 1.08995 * 109.46841 * 185.00074 * 8 7 6 41 41 H 1.08998 * 109.47029 * 305.00171 * 8 7 6 42 42 H 0.96700 * 114.00279 * 180.02562 * 9 8 7 43 43 H 1.09000 * 109.47282 * 300.00213 * 12 10 6 44 44 H 1.09007 * 109.47259 * 60.00181 * 12 10 6 45 45 H 1.08005 * 119.87550 * 0.02562 * 14 13 12 46 46 H 1.07995 * 119.75564 * 180.02562 * 15 14 13 47 47 H 1.08005 * 119.87439 * 180.02562 * 16 15 14 48 48 H 1.07993 * 120.12866 * 179.97438 * 17 16 15 49 49 H 0.97001 * 120.00340 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8851 0.0013 6 7 5.5449 2.8852 0.0013 7 6 6.2774 2.8846 1.2701 8 6 6.5324 4.3269 1.7123 9 8 5.2859 4.9656 1.9957 10 6 6.2188 2.8856 -1.1659 11 8 5.6125 2.8856 -2.2162 12 6 7.7258 2.8851 -1.1658 13 6 8.2282 2.8852 -2.5867 14 6 8.5559 1.6993 -3.2036 15 6 9.0177 1.6964 -4.5106 16 6 9.1554 2.8852 -5.2109 17 6 8.8348 4.0827 -4.6138 18 6 8.3586 4.0971 -3.2895 19 6 8.0191 5.3209 -2.6680 20 1 7.2953 5.3370 -1.8666 21 6 8.6208 6.5113 -3.0914 22 7 9.7068 6.4722 -3.8197 23 14 7.8733 8.1561 -2.6165 24 1 8.4556 8.6110 -1.3283 25 1 8.1673 9.1570 -3.6734 26 1 6.4030 8.0078 -2.4703 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9336 0.9286 -0.8891 35 1 3.9329 0.9289 0.8908 36 1 3.7162 3.3987 0.8913 37 1 3.7169 3.3992 -0.8887 38 1 5.6883 2.3704 2.0294 39 1 7.2298 2.3708 1.1395 40 1 7.1530 4.3278 2.6083 41 1 7.0441 4.8663 0.9153 42 1 5.3713 5.8852 2.2823 43 1 8.0895 3.7746 -0.6514 44 1 8.0888 1.9946 -0.6526 45 1 8.4521 0.7674 -2.6677 46 1 9.2722 0.7613 -4.9870 47 1 9.5158 2.8712 -6.2289 48 1 8.9432 5.0074 -5.1609 49 1 10.1237 7.2973 -4.1135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777428925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:51 Heat of formation + Delta-G solvation = -111.937455 kcal Electronic energy + Delta-G solvation = -27567.635188 eV Core-core repulsion = 23878.550017 eV Total energy + Delta-G solvation = -3689.085171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07352 -39.27943 -37.97365 -37.11883 -35.71666 -35.50507 -33.61234 -32.23233 -31.33754 -29.84234 -28.80679 -27.12954 -26.24383 -23.91376 -23.22097 -22.80680 -21.90213 -21.56057 -19.77409 -19.03707 -18.57557 -17.63983 -17.51307 -17.00332 -16.54617 -16.44702 -16.14826 -15.52247 -15.34374 -15.17018 -14.78892 -14.61769 -14.45935 -14.38231 -14.12555 -13.86840 -13.54431 -13.36899 -13.26089 -12.96039 -12.91327 -12.78221 -12.74641 -12.60522 -12.49113 -12.23451 -12.14955 -11.97787 -11.76970 -11.74503 -11.40009 -11.32357 -11.20879 -11.02571 -10.89592 -10.62161 -9.53001 -9.22585 -9.15600 -8.59921 -6.29407 0.99069 1.13127 1.33190 1.44682 1.51850 1.84483 2.18164 2.19716 2.77843 3.44230 3.65918 3.90851 3.91321 4.06456 4.15294 4.21728 4.25721 4.32143 4.39122 4.41656 4.51460 4.53401 4.61815 4.65792 4.69825 4.73203 4.76289 4.79131 4.82842 4.93674 4.95352 5.05547 5.09131 5.12605 5.18851 5.20784 5.31075 5.36761 5.42783 5.48750 5.54879 5.75466 5.77941 6.03681 6.16640 6.21332 6.42024 6.53343 6.73729 6.91009 6.99274 7.11306 7.42814 8.36497 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.004089 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.553055 B = 6846.810973 C = 8100.672227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.122 4.122 5 C 0.123 3.877 6 N -0.609 5.609 7 C 0.104 3.896 8 C 0.053 3.947 9 O -0.586 6.586 10 C 0.514 3.486 11 O -0.577 6.577 12 C -0.066 4.066 13 C -0.186 4.186 14 C -0.092 4.092 15 C -0.242 4.242 16 C -0.118 4.118 17 C -0.194 4.194 18 C 0.096 3.904 19 C -0.480 4.480 20 H 0.066 0.934 21 C 0.037 3.963 22 N -0.826 5.826 23 Si 0.968 3.032 24 H -0.251 1.251 25 H -0.268 1.268 26 H -0.272 1.272 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.029 0.971 42 H 0.392 0.608 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.861 -5.885 15.616 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.161 4.161 5 C 0.000 4.000 6 N -0.342 5.342 7 C -0.018 4.018 8 C -0.025 4.025 9 O -0.393 6.393 10 C 0.303 3.697 11 O -0.455 6.455 12 C -0.105 4.105 13 C -0.188 4.188 14 C -0.110 4.110 15 C -0.261 4.261 16 C -0.136 4.136 17 C -0.213 4.213 18 C 0.093 3.907 19 C -0.509 4.509 20 H 0.085 0.915 21 C -0.177 4.177 22 N -0.452 5.452 23 Si 0.789 3.211 24 H -0.175 1.175 25 H -0.192 1.192 26 H -0.196 1.196 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.048 0.952 42 H 0.241 0.759 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.220 -6.310 14.796 18.541 hybrid contribution 0.218 1.556 -0.447 1.634 sum -9.002 -4.754 14.350 17.594 Atomic orbital electron populations 1.21765 0.95060 1.02053 1.01951 1.21505 0.96514 0.96084 1.01907 1.21505 0.93794 0.97635 1.02115 1.21853 0.96448 0.96236 1.01553 1.21405 0.79305 0.97125 1.02138 1.48009 1.06761 1.73543 1.05902 1.21969 0.98959 0.96051 0.84841 1.22769 0.86131 0.93819 0.99809 1.86398 1.31072 1.31478 1.90396 1.21212 0.90945 0.74465 0.83036 1.90645 1.71158 1.50521 1.33186 1.20328 0.90219 1.04153 0.95839 1.19563 1.09994 0.93411 0.95807 1.20729 0.98776 0.96428 0.95116 1.20710 1.12048 0.96894 0.96424 1.20946 1.00559 0.93354 0.98760 1.21301 1.07412 0.96589 0.96041 1.17732 0.88840 0.92908 0.91177 1.19537 1.21768 0.91877 1.17764 0.91548 1.26635 0.93514 1.04286 0.93303 1.69877 1.15227 1.31203 1.28896 0.85419 0.79179 0.76871 0.79585 1.17481 1.19231 1.19621 0.93288 0.92052 0.91958 0.93214 0.91114 0.90505 0.93302 0.94552 0.90367 0.88556 0.94021 0.87597 0.87136 0.89532 0.95232 0.75885 0.88711 0.87108 0.86646 0.86698 0.87701 0.88556 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.12 -2.23 5.93 30.59 0.18 -2.05 16 3 C -0.11 -2.35 5.21 30.59 0.16 -2.19 16 4 C -0.12 -3.04 5.54 30.60 0.17 -2.87 16 5 C 0.12 3.59 5.23 86.38 0.45 4.04 16 6 N -0.61 -18.72 2.44 -821.80 -2.00 -20.72 16 7 C 0.10 2.19 5.62 86.38 0.49 2.68 16 8 C 0.05 1.11 7.38 71.98 0.53 1.64 16 9 O -0.59 -12.53 12.48 -148.98 -1.86 -14.39 16 10 C 0.51 20.86 7.28 87.66 0.64 21.50 16 11 O -0.58 -29.63 15.61 -3.03 -0.05 -29.67 16 12 C -0.07 -2.58 3.73 29.10 0.11 -2.47 16 13 C -0.19 -9.13 4.43 -19.40 -0.09 -9.22 16 14 C -0.09 -4.25 9.66 22.22 0.21 -4.03 16 15 C -0.24 -11.24 10.05 22.46 0.23 -11.01 16 16 C -0.12 -5.94 10.02 22.22 0.22 -5.71 16 17 C -0.19 -10.96 8.69 22.73 0.20 -10.76 16 18 C 0.10 5.35 5.56 -21.29 -0.12 5.24 16 19 C -0.48 -26.38 8.14 23.46 0.19 -26.19 16 20 H 0.07 3.60 6.67 -2.91 -0.02 3.58 16 21 C 0.04 1.91 5.16 85.25 0.44 2.35 16 22 N -0.83 -44.18 10.96 21.82 0.24 -43.94 16 23 Si 0.97 39.51 29.59 68.60 2.03 41.54 16 24 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 25 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 2.46 7.12 -2.39 -0.02 2.45 16 37 H 0.04 1.51 7.42 -2.39 -0.02 1.49 16 38 H 0.11 1.73 8.07 -2.39 -0.02 1.71 16 39 H 0.11 1.96 6.44 -2.39 -0.02 1.94 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 0.78 7.30 -2.39 -0.02 0.76 16 42 H 0.39 5.49 9.12 -74.06 -0.68 4.81 16 43 H 0.09 3.66 6.20 -2.39 -0.01 3.65 16 44 H 0.11 3.39 7.31 -2.38 -0.02 3.38 16 45 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 46 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 47 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 48 H 0.10 5.68 6.21 -2.91 -0.02 5.67 16 49 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 Total: -1.00 -73.22 395.71 3.34 -69.88 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: 0.26 Total: 37.99 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 4.73 Total: -40.69 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -1.76 Total: -64.66 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.91 Total: -44.07 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -73.22 3.34 -69.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777428925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.056 kcal (2) G-P(sol) polarization free energy of solvation -73.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds