Wall clock time and date at job start Tue Mar 31 2020 12:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47183 * 2 1 4 4 C 1.53001 * 109.47137 * 240.00390 * 2 1 3 5 5 C 1.52998 * 109.47375 * 59.99587 * 4 2 1 6 6 C 1.53000 * 109.47410 * 180.02562 * 5 4 2 7 7 O 1.42902 * 109.47055 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47457 * 120.00313 * 2 1 3 9 9 N 1.46507 * 109.47103 * 299.99816 * 8 2 1 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 2 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.09009 * 109.46861 * 299.99496 * 1 2 3 28 28 H 1.08993 * 109.47464 * 59.99583 * 1 2 3 29 29 H 1.09003 * 109.46917 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47500 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47330 * 300.00594 * 3 2 1 32 32 H 1.08997 * 109.46981 * 60.00061 * 3 2 1 33 33 H 1.09001 * 109.47065 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46830 * 299.99917 * 4 2 1 35 35 H 1.09003 * 109.46941 * 300.00573 * 5 4 2 36 36 H 1.09008 * 109.47151 * 59.99876 * 5 4 2 37 37 H 1.09001 * 109.46727 * 299.99884 * 6 5 4 38 38 H 1.08998 * 109.47132 * 60.00123 * 6 5 4 39 39 H 0.96699 * 113.99716 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.47212 * 180.02562 * 8 2 1 41 41 H 1.08991 * 109.47261 * 60.00072 * 8 2 1 42 42 H 0.97000 * 119.99705 * 0.02562 * 9 8 2 43 43 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 44 44 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 45 45 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 46 46 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 47 47 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 48 48 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 49 49 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 0.0000 -2.4985 6 6 2.0394 -0.7215 -3.7478 7 8 1.5634 -0.0474 -4.9145 8 6 2.0400 -0.7213 1.2491 9 7 1.5517 -0.0307 2.4454 10 6 1.8778 -0.4908 3.6695 11 8 2.5751 -1.4769 3.7806 12 6 1.3750 0.2192 4.8999 13 6 1.8775 -0.4912 6.1304 14 6 1.0935 -1.4374 6.7505 15 6 1.5506 -2.0875 7.8862 16 6 2.8029 -1.7985 8.4066 17 6 3.6062 -0.8607 7.7996 18 6 3.1525 -0.1944 6.6459 19 6 3.9697 0.7706 6.0132 20 1 3.8435 0.9786 4.9610 21 6 4.9420 1.4559 6.7502 22 7 4.7994 1.6043 8.0422 23 14 6.4435 2.1587 5.8895 24 1 7.3146 2.8331 6.8853 25 1 7.1980 1.0602 5.2344 26 1 6.0112 3.1422 4.8642 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1299 -0.7208 -1.2495 34 1 1.6766 -1.7488 -1.2493 35 1 0.4399 0.0001 -2.4984 36 1 1.8932 1.0278 -2.4985 37 1 3.1294 -0.7218 -3.7480 38 1 1.6757 -1.7490 -3.7476 39 1 1.8488 -0.4509 -5.7457 40 1 3.1300 -0.7209 1.2493 41 1 1.6768 -1.7489 1.2491 42 1 0.9937 0.7577 2.3564 43 1 0.2850 0.2183 4.9000 44 1 1.7376 1.2470 4.8999 45 1 0.1166 -1.6707 6.3535 46 1 0.9267 -2.8249 8.3692 47 1 3.1491 -2.3114 9.2917 48 1 4.5814 -0.6375 8.2063 49 1 3.9818 1.3147 8.4764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777460880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:14 Heat of formation + Delta-G solvation = -125.327318 kcal Electronic energy + Delta-G solvation = -26848.646496 eV Core-core repulsion = 23158.980697 eV Total energy + Delta-G solvation = -3689.665799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.01497 -39.72821 -38.92585 -37.63123 -35.73361 -34.97525 -33.53654 -32.08280 -31.09753 -29.02787 -28.19822 -27.52168 -26.85671 -26.02588 -22.83615 -22.75020 -22.06266 -21.17102 -19.83748 -19.53547 -18.17049 -17.85299 -17.12640 -16.78184 -16.62128 -16.56290 -15.93679 -15.87404 -15.69109 -15.44633 -14.99313 -14.78073 -14.32422 -14.21930 -14.14859 -14.02986 -13.85723 -13.51569 -13.11813 -13.01368 -12.97824 -12.73031 -12.65008 -12.58257 -12.24067 -12.13929 -12.04352 -11.98670 -11.66279 -11.48537 -11.47611 -11.38970 -11.21192 -10.84504 -10.82368 -10.77652 -9.99400 -9.43957 -9.42195 -9.05034 -6.38785 0.91866 0.99227 1.46653 1.62075 1.76109 1.82318 2.31098 2.36442 2.72570 3.30454 3.59902 3.71727 3.80527 3.94181 4.08903 4.11363 4.28654 4.29823 4.37937 4.46961 4.50046 4.55745 4.58474 4.59016 4.69429 4.72384 4.77793 4.82500 4.85657 4.87701 4.98680 5.04190 5.08412 5.09022 5.20356 5.21322 5.27434 5.33398 5.49339 5.50541 5.50671 5.57429 5.80653 5.84880 5.99549 6.05777 6.30187 6.46043 6.66680 6.87641 6.89984 7.02866 7.43689 8.09022 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.002974 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.911378 B = 9413.944664 C =10777.059979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.101 4.101 5 C -0.118 4.118 6 C 0.071 3.929 7 O -0.598 6.598 8 C 0.131 3.869 9 N -0.719 5.719 10 C 0.515 3.485 11 O -0.578 6.578 12 C -0.070 4.070 13 C -0.190 4.190 14 C -0.081 4.081 15 C -0.251 4.251 16 C -0.097 4.097 17 C -0.246 4.246 18 C 0.085 3.915 19 C -0.539 4.539 20 H 0.068 0.932 21 C 0.004 3.996 22 N -0.820 5.820 23 Si 1.107 2.893 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.252 1.252 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.396 0.604 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.411 0.589 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.109 0.891 48 H 0.083 0.917 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 0.501 -21.335 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.063 4.063 3 C -0.204 4.204 4 C -0.139 4.139 5 C -0.155 4.155 6 C -0.006 4.006 7 O -0.406 6.406 8 C 0.007 3.993 9 N -0.374 5.374 10 C 0.303 3.697 11 O -0.456 6.456 12 C -0.109 4.109 13 C -0.191 4.191 14 C -0.099 4.099 15 C -0.270 4.270 16 C -0.115 4.115 17 C -0.265 4.265 18 C 0.082 3.918 19 C -0.568 4.568 20 H 0.086 0.914 21 C -0.212 4.212 22 N -0.443 5.443 23 Si 0.925 3.075 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.176 1.176 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.246 0.754 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.249 0.751 43 H 0.131 0.869 44 H 0.112 0.888 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.101 0.899 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.284 0.990 -20.491 21.456 hybrid contribution -1.078 -1.192 -0.120 1.611 sum -7.361 -0.201 -20.611 21.887 Atomic orbital electron populations 1.21944 0.93042 1.02378 1.02685 1.20675 0.96930 0.95931 0.92779 1.21968 1.01007 0.94757 1.02621 1.21424 1.00964 0.99349 0.92155 1.21568 1.01807 1.00073 0.92050 1.22262 0.97825 0.95346 0.85199 1.86418 1.78157 1.58528 1.17516 1.21356 0.98068 0.95844 0.83983 1.45932 1.54218 1.32578 1.04632 1.21085 0.79228 0.83970 0.85427 1.90660 1.38970 1.28605 1.87408 1.20269 1.01692 0.99678 0.89277 1.19530 0.94942 1.04265 1.00409 1.20807 0.98715 0.95031 0.95331 1.20718 0.98088 1.07027 1.01213 1.20893 0.95049 0.96883 0.98710 1.21148 0.99750 1.03263 1.02372 1.17793 0.91271 0.91444 0.91278 1.20526 1.17726 1.20451 0.98087 0.91387 1.28219 1.03954 0.93977 0.95056 1.70553 1.28542 1.33653 1.11586 0.83141 0.71983 0.76902 0.75511 1.19395 1.20113 1.17610 0.92301 0.90755 0.92533 0.93150 0.90627 0.92499 0.91548 0.91044 0.90919 0.91258 0.93119 0.92835 0.75410 0.93689 0.92724 0.75130 0.86925 0.88772 0.86299 0.86327 0.87291 0.89896 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 7.95 71.98 0.57 -1.50 16 2 C -0.06 -1.06 0.56 -52.18 -0.03 -1.09 16 3 C -0.15 -2.41 7.95 71.98 0.57 -1.84 16 4 C -0.10 -1.47 4.27 30.59 0.13 -1.34 16 5 C -0.12 -1.60 4.88 30.59 0.15 -1.45 16 6 C 0.07 0.89 7.05 71.98 0.51 1.40 16 7 O -0.60 -8.52 13.66 -148.98 -2.04 -10.56 16 8 C 0.13 3.29 4.56 86.38 0.39 3.69 16 9 N -0.72 -19.89 4.96 -463.07 -2.30 -22.18 16 10 C 0.52 19.95 7.46 87.66 0.65 20.60 16 11 O -0.58 -28.56 16.03 -3.04 -0.05 -28.61 16 12 C -0.07 -2.67 5.18 29.10 0.15 -2.52 16 13 C -0.19 -9.18 4.43 -19.40 -0.09 -9.26 16 14 C -0.08 -3.63 9.66 22.22 0.21 -3.41 16 15 C -0.25 -11.38 10.05 22.46 0.23 -11.16 16 16 C -0.10 -4.76 10.02 22.22 0.22 -4.53 16 17 C -0.25 -13.60 7.95 22.73 0.18 -13.42 16 18 C 0.08 4.68 5.30 -21.29 -0.11 4.56 16 19 C -0.54 -29.53 8.08 23.46 0.19 -29.34 16 20 H 0.07 3.65 6.73 -2.91 -0.02 3.63 16 21 C 0.00 0.21 4.94 85.25 0.42 0.63 16 22 N -0.82 -45.44 12.31 21.82 0.27 -45.17 16 23 Si 1.11 45.17 30.00 68.60 2.06 47.23 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 25 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 27 H 0.06 0.83 6.86 -2.38 -0.02 0.81 16 28 H 0.07 0.91 6.43 -2.39 -0.02 0.89 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.04 6.43 -2.39 -0.02 1.02 16 32 H 0.06 0.95 6.86 -2.39 -0.02 0.93 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.00 6.43 -2.39 -0.02 0.99 16 36 H 0.07 1.01 6.43 -2.38 -0.02 1.00 16 37 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.40 2.07 9.12 -74.06 -0.68 1.39 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.41 8.69 6.16 -92.71 -0.57 8.11 16 43 H 0.11 3.39 8.05 -2.39 -0.02 3.37 16 44 H 0.09 3.63 7.06 -2.39 -0.02 3.61 16 45 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 46 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 47 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 48 H 0.08 4.82 6.49 -2.91 -0.02 4.80 16 49 H 0.28 16.34 6.68 -92.71 -0.62 15.72 16 Total: -1.00 -72.88 387.62 2.16 -70.71 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.14 Total: 38.55 kcal Atomic # 6 Polarization: -54.33 SS G_CDS: 4.36 Total: -49.97 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -2.03 Total: -67.35 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -2.08 Total: -39.17 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.06 Total: 47.23 kcal Total: -72.88 2.16 -70.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777460880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.613 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds