Wall clock time and date at job start Tue Mar 31 2020 12:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.53001 * 109.47383 * 239.99538 * 2 1 3 5 5 C 1.53010 * 109.47008 * 119.99774 * 2 1 3 6 6 N 1.46500 * 109.46900 * 54.28040 * 5 2 1 7 7 C 1.46498 * 120.00318 * 275.88364 * 6 5 2 8 8 C 1.50702 * 109.47316 * 270.00524 * 7 6 5 9 9 H 1.07998 * 119.99729 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00080 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00339 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99899 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47155 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47375 * 120.00024 * 12 10 8 15 15 H 1.48500 * 109.46699 * 239.99762 * 12 10 8 16 16 C 1.34777 * 119.99720 * 95.88700 * 6 5 2 17 17 O 1.21285 * 119.99716 * 185.41519 * 16 6 5 18 18 C 1.50703 * 120.00071 * 5.41400 * 16 6 5 19 19 C 1.50698 * 109.47177 * 174.27992 * 18 16 6 20 20 C 1.38262 * 119.99812 * 265.02509 * 19 18 16 21 21 C 1.38212 * 119.99976 * 179.97438 * 20 19 18 22 22 C 1.38259 * 120.00069 * 0.02562 * 21 20 19 23 23 C 1.38214 * 119.99907 * 359.70414 * 22 21 20 24 24 C 1.38205 * 120.00409 * 84.99956 * 19 18 16 25 25 C 1.50703 * 119.99760 * 359.97438 * 24 19 18 26 26 O 1.42903 * 109.46983 * 180.02562 * 25 24 19 27 27 H 1.08997 * 109.47351 * 300.00572 * 1 2 3 28 28 H 1.09002 * 109.46751 * 60.00429 * 1 2 3 29 29 H 1.08995 * 109.46682 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46899 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46822 * 300.00001 * 3 2 1 32 32 H 1.08997 * 109.47453 * 59.99490 * 3 2 1 33 33 H 1.08994 * 109.47021 * 304.17362 * 4 2 1 34 34 H 1.09003 * 109.46728 * 64.17673 * 4 2 1 35 35 H 1.08998 * 109.47110 * 184.17113 * 4 2 1 36 36 H 1.09002 * 109.46565 * 294.28202 * 5 2 1 37 37 H 1.08995 * 109.46962 * 174.28600 * 5 2 1 38 38 H 1.09002 * 109.46886 * 30.00143 * 7 6 5 39 39 H 1.08997 * 109.47441 * 149.99959 * 7 6 5 40 40 H 0.97002 * 120.00411 * 180.02562 * 11 10 8 41 41 H 1.08997 * 109.46858 * 54.27853 * 18 16 6 42 42 H 1.09001 * 109.46896 * 294.28050 * 18 16 6 43 43 H 1.07998 * 119.99945 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.00204 * 179.97438 * 21 20 19 45 45 H 1.07999 * 119.99982 * 179.97438 * 22 21 20 46 46 H 1.07997 * 120.00309 * 180.29816 * 23 22 21 47 47 H 1.08992 * 109.47514 * 300.00196 * 25 24 19 48 48 H 1.09007 * 109.46998 * 60.00492 * 25 24 19 49 49 H 0.96705 * 113.99653 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2494 6 7 1.4425 -2.0570 1.3202 7 6 0.1130 -2.2345 1.9093 8 6 0.2490 -2.4923 3.3878 9 1 1.2279 -2.5215 3.8430 10 6 -0.8762 -2.6920 4.1592 11 7 -2.0682 -2.6570 3.6048 12 14 -0.7075 -3.0124 5.9918 13 1 0.7296 -3.0024 6.3658 14 1 -1.4235 -1.9534 6.7474 15 1 -1.2944 -4.3367 6.3188 16 6 2.1160 -3.1226 0.8433 17 8 1.5836 -4.2119 0.8117 18 6 3.5306 -2.9606 0.3495 19 6 4.1003 -4.3125 0.0050 20 6 4.8542 -5.0027 0.9361 21 6 5.3762 -6.2429 0.6204 22 6 5.1451 -6.7931 -0.6268 23 6 4.3868 -6.1056 -1.5556 24 6 3.8688 -4.8628 -1.2415 25 6 3.0462 -4.1110 -2.2560 26 8 2.9497 -4.8811 -3.4559 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6170 -1.7251 -1.2873 34 1 1.7391 -0.1661 -2.1376 35 1 3.1275 -0.7865 -1.2125 36 1 1.7626 -0.1516 2.1363 37 1 3.1252 -0.8107 1.1997 38 1 -0.4780 -1.3324 1.7507 39 1 -0.3837 -3.0819 1.4368 40 1 -2.8599 -2.7971 4.1475 41 1 4.1368 -2.4987 1.1288 42 1 3.5354 -2.3274 -0.5377 43 1 5.0351 -4.5727 1.9102 44 1 5.9655 -6.7818 1.3475 45 1 5.5534 -7.7619 -0.8737 46 1 4.2022 -6.5375 -2.5281 47 1 2.0476 -3.9356 -1.8560 48 1 3.5231 -3.1555 -2.4744 49 1 2.4330 -4.4571 -4.1548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779625206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:35 Heat of formation + Delta-G solvation = -70.371114 kcal Electronic energy + Delta-G solvation = -28525.671873 eV Core-core repulsion = 24838.389154 eV Total energy + Delta-G solvation = -3687.282719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.09945 -38.86371 -36.98513 -36.55451 -33.92366 -32.86177 -32.30847 -31.18092 -28.78565 -27.33018 -26.91834 -26.81799 -25.76301 -25.32082 -22.86713 -21.71006 -20.70069 -19.27919 -18.01133 -17.41219 -16.60207 -16.48609 -16.28137 -15.45099 -15.26022 -14.84579 -14.70366 -14.58485 -14.31599 -13.86188 -13.68605 -13.61946 -13.44379 -12.85162 -12.72434 -12.60544 -12.27948 -12.09814 -12.02589 -11.92159 -11.57838 -11.39803 -11.35657 -11.18018 -10.95901 -10.86280 -10.79751 -10.66180 -10.57622 -10.45541 -10.27662 -10.16497 -10.11721 -9.52769 -8.99720 -8.52392 -8.41547 -8.33676 -7.59305 -6.03925 -4.08002 1.51751 1.62954 3.29041 3.36526 3.38953 3.44553 3.81403 4.10560 4.20130 4.45479 4.88755 4.94882 4.97106 4.99898 5.04780 5.14232 5.22842 5.29181 5.29750 5.36961 5.44090 5.56888 5.60850 5.65495 5.66424 5.71798 5.74733 5.87757 5.91597 5.95117 6.09216 6.16085 6.16608 6.17006 6.26199 6.30274 6.38679 6.53891 6.63547 6.70752 6.75135 6.81850 7.10926 7.20912 7.46742 7.57956 7.58519 7.93244 8.25911 8.44550 8.91516 9.12409 9.57034 11.03855 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.004933 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.222585 B = 5674.379280 C = 7302.501044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.146 4.146 5 C 0.118 3.882 6 N -0.593 5.593 7 C 0.238 3.762 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.510 3.490 17 O -0.533 6.533 18 C -0.120 4.120 19 C -0.050 4.050 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.098 4.098 24 C -0.075 4.075 25 C 0.116 3.884 26 O -0.570 6.570 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.262 0.738 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.128 0.872 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.119 4.130 -11.823 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.203 4.203 5 C -0.006 4.006 6 N -0.325 5.325 7 C 0.119 3.881 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.296 3.704 17 O -0.410 6.410 18 C -0.160 4.160 19 C -0.051 4.051 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.116 4.116 24 C -0.075 4.075 25 C 0.039 3.961 26 O -0.375 6.375 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.146 0.854 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 12.974 3.116 -11.423 17.564 hybrid contribution -0.382 0.294 0.951 1.067 sum 12.591 3.410 -10.471 16.728 Atomic orbital electron populations 1.22048 0.93767 1.03241 1.00964 1.20993 0.97022 0.95104 0.95635 1.21806 1.00512 0.95330 1.01849 1.22074 1.00062 1.00795 0.97347 1.21561 0.96863 0.84760 0.97452 1.48148 1.20477 1.05217 1.58617 1.19500 0.77415 0.98454 0.92687 1.21501 0.92870 1.48862 0.93189 0.92591 1.24906 0.95150 0.95254 0.98716 1.69933 0.97575 1.50027 1.35818 0.86493 0.78109 0.77904 0.85216 1.19858 1.20995 1.20931 1.20072 0.86898 0.84775 0.78644 1.90703 1.69356 1.25568 1.55355 1.21082 0.95952 0.95708 1.03280 1.19084 0.97224 0.95724 0.93056 1.20934 0.98004 0.95203 0.98534 1.21060 1.00438 0.95639 0.96715 1.21090 0.99759 0.99769 0.94084 1.20886 0.96848 0.94100 0.99774 1.19403 0.98439 0.95744 0.93942 1.20969 0.98793 0.92278 0.84056 1.86412 1.76933 1.48819 1.25339 0.92185 0.93783 0.90998 0.92898 0.92780 0.92381 0.92496 0.92771 0.92804 0.90135 0.91537 0.93651 0.94100 0.92835 0.88676 0.88099 0.86103 0.86320 0.86407 0.85384 0.91609 0.92684 0.77321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 6.98 37.16 0.26 -1.91 16 2 C -0.09 -1.12 0.85 -154.50 -0.13 -1.25 16 3 C -0.14 -1.43 8.47 37.16 0.31 -1.12 16 4 C -0.15 -1.69 6.84 37.16 0.25 -1.44 16 5 C 0.12 1.82 4.58 -4.04 -0.02 1.80 16 6 N -0.59 -11.87 2.00 -175.05 -0.35 -12.22 16 7 C 0.24 5.99 3.93 -5.19 -0.02 5.97 16 8 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 9 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 12 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 C 0.51 10.25 6.05 -10.98 -0.07 10.19 16 17 O -0.53 -13.32 15.58 5.55 0.09 -13.23 16 18 C -0.12 -1.81 3.70 -29.03 -0.11 -1.92 16 19 C -0.05 -0.80 4.39 -104.63 -0.46 -1.26 16 20 C -0.11 -1.65 9.68 -39.58 -0.38 -2.04 16 21 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 22 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 23 C -0.10 -1.47 9.38 -39.58 -0.37 -1.84 16 24 C -0.08 -1.18 5.85 -104.62 -0.61 -1.79 16 25 C 0.12 1.57 6.22 36.01 0.22 1.80 16 26 O -0.57 -6.99 12.14 -35.23 -0.43 -7.42 16 27 H 0.06 0.96 7.72 -51.93 -0.40 0.56 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.30 5.75 -51.93 -0.30 1.01 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.54 6.49 -51.93 -0.34 0.20 16 36 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 37 H 0.07 0.85 6.11 -51.93 -0.32 0.54 16 38 H 0.05 1.13 5.31 -51.93 -0.28 0.86 16 39 H 0.04 1.19 7.35 -51.93 -0.38 0.81 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.09 1.26 7.24 -51.93 -0.38 0.89 16 42 H 0.10 1.26 3.38 -51.93 -0.18 1.09 16 43 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 46 H 0.13 1.81 7.01 -52.49 -0.37 1.44 16 47 H 0.07 1.02 7.49 -51.93 -0.39 0.63 16 48 H 0.06 0.61 7.51 -51.92 -0.39 0.22 16 49 H 0.38 2.81 9.12 45.56 0.42 3.23 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -34.24 381.78 -8.53 -42.78 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.98 Total: 5.47 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.33 Total: -12.36 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.39 Total: -37.82 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.34 Total: -20.65 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.24 -8.53 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779625206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.594 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds