Wall clock time and date at job start Tue Mar 31 2020 12:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.53001 * 109.47383 * 239.99538 * 2 1 3 5 5 C 1.53010 * 109.47008 * 119.99774 * 2 1 3 6 6 N 1.46500 * 109.46900 * 54.28040 * 5 2 1 7 7 C 1.46498 * 120.00318 * 275.88364 * 6 5 2 8 8 C 1.50702 * 109.47316 * 270.00524 * 7 6 5 9 9 H 1.07998 * 119.99729 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00080 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00339 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99899 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47155 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47375 * 120.00024 * 12 10 8 15 15 H 1.48500 * 109.46699 * 239.99762 * 12 10 8 16 16 C 1.34777 * 119.99720 * 95.88700 * 6 5 2 17 17 O 1.21285 * 119.99716 * 185.41519 * 16 6 5 18 18 C 1.50703 * 120.00071 * 5.41400 * 16 6 5 19 19 C 1.50698 * 109.47177 * 174.27992 * 18 16 6 20 20 C 1.38262 * 119.99812 * 265.02509 * 19 18 16 21 21 C 1.38212 * 119.99976 * 179.97438 * 20 19 18 22 22 C 1.38259 * 120.00069 * 0.02562 * 21 20 19 23 23 C 1.38214 * 119.99907 * 359.70414 * 22 21 20 24 24 C 1.38205 * 120.00409 * 84.99956 * 19 18 16 25 25 C 1.50703 * 119.99760 * 359.97438 * 24 19 18 26 26 O 1.42903 * 109.46983 * 180.02562 * 25 24 19 27 27 H 1.08997 * 109.47351 * 300.00572 * 1 2 3 28 28 H 1.09002 * 109.46751 * 60.00429 * 1 2 3 29 29 H 1.08995 * 109.46682 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46899 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46822 * 300.00001 * 3 2 1 32 32 H 1.08997 * 109.47453 * 59.99490 * 3 2 1 33 33 H 1.08994 * 109.47021 * 304.17362 * 4 2 1 34 34 H 1.09003 * 109.46728 * 64.17673 * 4 2 1 35 35 H 1.08998 * 109.47110 * 184.17113 * 4 2 1 36 36 H 1.09002 * 109.46565 * 294.28202 * 5 2 1 37 37 H 1.08995 * 109.46962 * 174.28600 * 5 2 1 38 38 H 1.09002 * 109.46886 * 30.00143 * 7 6 5 39 39 H 1.08997 * 109.47441 * 149.99959 * 7 6 5 40 40 H 0.97002 * 120.00411 * 180.02562 * 11 10 8 41 41 H 1.08997 * 109.46858 * 54.27853 * 18 16 6 42 42 H 1.09001 * 109.46896 * 294.28050 * 18 16 6 43 43 H 1.07998 * 119.99945 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.00204 * 179.97438 * 21 20 19 45 45 H 1.07999 * 119.99982 * 179.97438 * 22 21 20 46 46 H 1.07997 * 120.00309 * 180.29816 * 23 22 21 47 47 H 1.08992 * 109.47514 * 300.00196 * 25 24 19 48 48 H 1.09007 * 109.46998 * 60.00492 * 25 24 19 49 49 H 0.96705 * 113.99653 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2494 6 7 1.4425 -2.0570 1.3202 7 6 0.1130 -2.2345 1.9093 8 6 0.2490 -2.4923 3.3878 9 1 1.2279 -2.5215 3.8430 10 6 -0.8762 -2.6920 4.1592 11 7 -2.0682 -2.6570 3.6048 12 14 -0.7075 -3.0124 5.9918 13 1 0.7296 -3.0024 6.3658 14 1 -1.4235 -1.9534 6.7474 15 1 -1.2944 -4.3367 6.3188 16 6 2.1160 -3.1226 0.8433 17 8 1.5836 -4.2119 0.8117 18 6 3.5306 -2.9606 0.3495 19 6 4.1003 -4.3125 0.0050 20 6 4.8542 -5.0027 0.9361 21 6 5.3762 -6.2429 0.6204 22 6 5.1451 -6.7931 -0.6268 23 6 4.3868 -6.1056 -1.5556 24 6 3.8688 -4.8628 -1.2415 25 6 3.0462 -4.1110 -2.2560 26 8 2.9497 -4.8811 -3.4559 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6170 -1.7251 -1.2873 34 1 1.7391 -0.1661 -2.1376 35 1 3.1275 -0.7865 -1.2125 36 1 1.7626 -0.1516 2.1363 37 1 3.1252 -0.8107 1.1997 38 1 -0.4780 -1.3324 1.7507 39 1 -0.3837 -3.0819 1.4368 40 1 -2.8599 -2.7971 4.1475 41 1 4.1368 -2.4987 1.1288 42 1 3.5354 -2.3274 -0.5377 43 1 5.0351 -4.5727 1.9102 44 1 5.9655 -6.7818 1.3475 45 1 5.5534 -7.7619 -0.8737 46 1 4.2022 -6.5375 -2.5281 47 1 2.0476 -3.9356 -1.8560 48 1 3.5231 -3.1555 -2.4744 49 1 2.4330 -4.4571 -4.1548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779625206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:34 Heat of formation + Delta-G solvation = -92.355609 kcal Electronic energy + Delta-G solvation = -28526.625192 eV Core-core repulsion = 24838.389154 eV Total energy + Delta-G solvation = -3688.236038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44717 -40.09262 -38.34220 -37.54279 -35.67221 -34.34567 -33.96418 -32.26900 -30.38156 -28.57077 -28.08052 -28.02920 -26.93702 -26.68669 -24.70201 -22.90408 -21.88193 -20.57257 -19.34244 -18.71643 -18.37859 -17.92157 -17.46336 -17.00993 -16.67462 -16.25293 -15.91302 -15.74798 -15.64089 -15.13198 -14.87639 -14.72090 -14.66456 -14.43566 -14.15868 -13.98065 -13.57127 -13.28875 -13.24575 -13.10325 -12.99328 -12.91953 -12.74674 -12.55740 -12.48179 -12.33302 -12.13671 -11.93579 -11.88251 -11.72248 -11.66714 -11.49780 -11.35070 -11.25760 -10.62192 -10.60769 -9.67214 -9.47751 -9.29977 -8.20865 -6.34969 0.40328 0.50734 1.33999 1.36655 1.47822 1.87875 2.32007 2.46690 2.89123 3.08440 3.27404 3.71110 3.85234 3.88472 3.91748 3.94684 4.09838 4.16436 4.17444 4.29066 4.35954 4.45281 4.53790 4.57914 4.62970 4.69297 4.78272 4.82997 4.85380 4.96330 4.96888 5.07677 5.10164 5.11634 5.17049 5.19839 5.23453 5.29445 5.39795 5.48621 5.55591 5.56860 5.61953 5.62603 5.70461 5.92046 6.11830 6.12857 6.73715 6.84407 6.86283 7.30644 7.55325 8.85472 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.004933 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.222585 B = 5674.379280 C = 7302.501044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.144 4.144 5 C 0.110 3.890 6 N -0.594 5.594 7 C 0.259 3.741 8 C -0.541 4.541 9 H 0.051 0.949 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.962 3.038 13 H -0.266 1.266 14 H -0.269 1.269 15 H -0.285 1.285 16 C 0.506 3.494 17 O -0.593 6.593 18 C -0.104 4.104 19 C -0.072 4.072 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.129 4.129 23 C -0.115 4.115 24 C -0.094 4.094 25 C 0.122 3.878 26 O -0.580 6.580 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.042 0.958 39 H -0.012 1.012 40 H 0.265 0.735 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.132 0.868 47 H 0.038 0.962 48 H 0.084 0.916 49 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.903 5.426 -12.089 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.201 4.201 5 C -0.012 4.012 6 N -0.324 5.324 7 C 0.138 3.862 8 C -0.580 4.580 9 H 0.069 0.931 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.787 3.213 13 H -0.191 1.191 14 H -0.194 1.194 15 H -0.211 1.211 16 C 0.295 3.705 17 O -0.474 6.474 18 C -0.143 4.143 19 C -0.073 4.073 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.094 4.094 25 C 0.045 3.955 26 O -0.388 6.388 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.006 0.994 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.149 0.851 47 H 0.056 0.944 48 H 0.102 0.898 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 15.783 4.467 -11.713 20.156 hybrid contribution -1.291 -0.151 0.965 1.619 sum 14.492 4.316 -10.749 18.552 Atomic orbital electron populations 1.21977 0.96039 1.00566 1.01125 1.20968 0.95064 0.97090 0.95122 1.21756 1.01960 0.92736 1.02359 1.22063 1.01458 0.99339 0.97235 1.21917 0.98698 0.82233 0.98389 1.48085 1.18809 1.07518 1.57988 1.18904 0.80036 0.95943 0.91337 1.21815 0.92723 1.48854 0.94573 0.93060 1.25797 0.94795 0.94912 1.03534 1.70056 0.98348 1.50790 1.37635 0.85448 0.78460 0.77830 0.79568 1.19061 1.19415 1.21081 1.20956 0.88560 0.83584 0.77406 1.90667 1.71042 1.27907 1.57757 1.21019 0.91962 0.96449 1.04875 1.19253 0.98091 0.96394 0.93563 1.21237 0.98261 0.95985 0.98863 1.21410 1.00303 0.95328 0.97362 1.21456 0.98893 1.00650 0.93722 1.21104 0.97494 0.94248 1.00449 1.19746 0.98736 0.96385 0.94575 1.20855 0.97209 0.93327 0.84115 1.86365 1.77463 1.49470 1.25535 0.93912 0.91658 0.95043 0.90512 0.91352 0.92900 0.95118 0.90781 0.90230 0.91379 0.87948 0.94037 0.99437 0.92581 0.86270 0.85335 0.85256 0.83744 0.83712 0.85062 0.94389 0.89845 0.74999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 6.98 71.98 0.50 -3.82 16 2 C -0.08 -1.98 0.85 -52.18 -0.04 -2.03 16 3 C -0.13 -2.28 8.47 71.98 0.61 -1.67 16 4 C -0.14 -2.98 6.84 71.98 0.49 -2.49 16 5 C 0.11 3.28 4.58 86.38 0.40 3.67 16 6 N -0.59 -24.46 2.00 -826.13 -1.65 -26.11 16 7 C 0.26 13.84 3.93 85.63 0.34 14.18 16 8 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 9 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 10 C 0.01 0.48 5.46 84.65 0.46 0.95 16 11 N -0.93 -56.69 13.29 21.44 0.28 -56.40 16 12 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 16 C 0.51 20.81 6.05 87.66 0.53 21.34 16 17 O -0.59 -31.27 15.58 -3.04 -0.05 -31.32 16 18 C -0.10 -2.98 3.70 29.10 0.11 -2.87 16 19 C -0.07 -2.25 4.39 -19.87 -0.09 -2.34 16 20 C -0.13 -3.68 9.68 22.27 0.22 -3.46 16 21 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 22 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 23 C -0.12 -3.36 9.38 22.27 0.21 -3.15 16 24 C -0.09 -2.90 5.85 -19.87 -0.12 -3.02 16 25 C 0.12 3.24 6.22 71.24 0.44 3.68 16 26 O -0.58 -13.76 12.14 -148.98 -1.81 -15.57 16 27 H 0.04 1.43 7.72 -2.39 -0.02 1.41 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.03 1.21 5.75 -2.39 -0.01 1.19 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.03 0.81 6.46 -2.39 -0.02 0.79 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.23 6.49 -2.39 -0.02 1.22 16 36 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 37 H 0.10 2.30 6.11 -2.39 -0.01 2.28 16 38 H 0.04 2.23 5.31 -2.39 -0.01 2.21 16 39 H -0.01 -0.79 7.35 -2.39 -0.02 -0.81 16 40 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.12 2.82 7.24 -2.39 -0.02 2.80 16 42 H 0.13 2.88 3.38 -2.39 -0.01 2.87 16 43 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 45 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 46 H 0.13 3.63 7.01 -2.91 -0.02 3.61 16 47 H 0.04 1.22 7.49 -2.39 -0.02 1.20 16 48 H 0.08 1.67 7.51 -2.38 -0.02 1.65 16 49 H 0.40 5.48 9.12 -74.05 -0.68 4.80 16 Total: -1.00 -79.76 381.78 3.82 -75.93 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.28 Total: 24.23 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 4.74 Total: -18.23 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.37 Total: -82.51 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -1.86 Total: -46.89 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -79.76 3.82 -75.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779625206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.422 kcal (2) G-P(sol) polarization free energy of solvation -79.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds