Wall clock time and date at job start Tue Mar 31 2020 12:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47105 * 2 1 4 4 C 1.52998 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46896 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47420 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47632 * 179.97438 * 6 5 4 8 8 C 1.35703 * 117.00248 * 179.97438 * 7 6 5 9 9 C 1.39001 * 119.91238 * 0.30191 * 8 7 6 10 10 C 1.37701 * 120.09036 * 180.25651 * 9 8 7 11 11 C 1.39740 * 119.91009 * 359.43945 * 10 9 8 12 12 C 1.47594 * 120.08984 * 180.30153 * 11 10 9 13 13 O 1.21587 * 119.99976 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00311 * 180.02562 * 12 11 10 15 15 C 1.46507 * 120.00361 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47163 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47034 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00364 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99970 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00308 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47211 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47351 * 119.99837 * 21 19 17 24 24 H 1.48498 * 109.47077 * 240.00160 * 21 19 17 25 25 C 1.39733 * 119.82362 * 0.28485 * 11 10 9 26 26 C 1.37709 * 119.90833 * 359.97438 * 25 11 10 27 27 H 1.08992 * 109.47609 * 300.00460 * 1 2 3 28 28 H 1.08999 * 109.47069 * 60.00806 * 1 2 3 29 29 H 1.09006 * 109.46676 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47463 * 239.99820 * 2 1 3 31 31 H 1.09005 * 109.47293 * 119.99580 * 2 1 3 32 32 H 1.08992 * 109.47262 * 59.99328 * 3 2 1 33 33 H 1.08999 * 109.46499 * 299.99543 * 3 2 1 34 34 H 1.09001 * 109.47463 * 59.99820 * 4 3 2 35 35 H 1.08999 * 109.47069 * 299.99193 * 4 3 2 36 36 H 1.08992 * 109.47364 * 59.99393 * 5 4 3 37 37 H 1.09005 * 109.47271 * 299.99613 * 5 4 3 38 38 H 1.09007 * 109.46974 * 59.98989 * 6 5 4 39 39 H 1.09005 * 109.46584 * 300.00035 * 6 5 4 40 40 H 1.08004 * 119.95747 * 359.97438 * 9 8 7 41 41 H 1.08002 * 120.04909 * 179.72495 * 10 9 8 42 42 H 0.97004 * 119.99698 * 359.97438 * 14 12 11 43 43 H 1.08999 * 109.46594 * 299.99752 * 15 14 12 44 44 H 1.08991 * 109.46752 * 59.99612 * 15 14 12 45 45 H 1.08997 * 109.47263 * 300.00438 * 16 15 14 46 46 H 1.09005 * 109.47165 * 59.99794 * 16 15 14 47 47 H 0.96999 * 120.00277 * 179.97438 * 20 19 17 48 48 H 1.08003 * 120.04691 * 180.02562 * 25 11 10 49 49 H 1.07999 * 119.95155 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 0.0013 7 8 6.0862 4.2324 0.0001 8 6 7.4316 4.4103 0.0015 9 6 8.2767 3.3067 -0.0023 10 6 9.6423 3.4829 0.0046 11 6 10.1784 4.7734 0.0034 12 6 11.6416 4.9669 0.0040 13 8 12.3823 4.0026 0.0049 14 7 12.1568 6.2123 0.0034 15 6 13.6092 6.4043 0.0034 16 6 13.9257 7.9011 0.0021 17 6 15.4197 8.0986 0.0027 18 1 16.0776 7.2423 0.0035 19 6 15.9466 9.3727 0.0012 20 7 15.1455 10.4158 -0.0003 21 14 17.7985 9.6176 0.0012 22 1 18.4728 8.2945 0.0037 23 1 18.1978 10.3749 -1.2121 24 1 18.1972 10.3780 1.2128 25 6 9.3255 5.8802 0.0014 26 6 7.9608 5.6955 0.0001 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9290 0.8909 36 1 3.7161 3.3994 0.8894 37 1 3.7170 3.3984 -0.8905 38 1 5.9740 2.3705 -0.8880 39 1 5.9725 2.3720 0.8920 40 1 7.8616 2.3096 -0.0059 41 1 10.2983 2.6250 0.0061 42 1 11.5658 6.9815 0.0023 43 1 14.0366 5.9429 0.8937 44 1 14.0367 5.9421 -0.8862 45 1 13.4982 8.3621 -0.8883 46 1 13.4980 8.3638 0.8916 47 1 15.5162 11.3121 -0.0010 48 1 9.7359 6.8792 0.0002 49 1 7.3010 6.5504 -0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784139222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:46 Heat of formation + Delta-G solvation = -92.466670 kcal Electronic energy + Delta-G solvation = -24623.285547 eV Core-core repulsion = 20935.044693 eV Total energy + Delta-G solvation = -3688.240854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53035 -39.28556 -37.44400 -36.61722 -34.89178 -33.47546 -32.89068 -31.26531 -30.74515 -29.26709 -28.60955 -25.13225 -24.84333 -23.06899 -22.80394 -21.53196 -21.43872 -20.99152 -20.11698 -18.51857 -17.40193 -16.90713 -16.42496 -16.12670 -15.93058 -15.15027 -14.91093 -14.89036 -14.49353 -14.43111 -14.38405 -13.94085 -13.71071 -13.45961 -13.39884 -13.28148 -12.91869 -12.59769 -12.44620 -12.26730 -12.17411 -11.97610 -11.49721 -11.48498 -11.20106 -11.14380 -11.08173 -11.03786 -10.96393 -10.93875 -10.62029 -10.33275 -9.83876 -9.48354 -9.23475 -9.20098 -8.60629 -8.43326 -8.24943 -6.08995 -4.11670 0.87819 1.19402 2.78393 3.03613 3.29005 3.36532 3.41466 3.68844 3.91794 4.20932 4.31071 4.41754 4.42663 4.52864 4.58069 4.62275 4.74338 4.80371 4.84167 4.95839 5.00820 5.13327 5.15345 5.20714 5.21826 5.27578 5.28305 5.37419 5.43368 5.45928 5.54958 5.58768 5.70938 5.80039 5.83297 5.85217 6.02597 6.11822 6.24363 6.35949 6.40833 6.48612 6.74536 6.91422 7.11962 7.52372 7.62007 7.89399 8.01638 8.28355 8.64641 8.94540 9.53295 11.02700 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.050974 B = 0.001461 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.172804 B =19166.356289 C =19663.269702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.119 4.119 6 C 0.057 3.943 7 O -0.313 6.313 8 C 0.149 3.851 9 C -0.220 4.220 10 C -0.021 4.021 11 C -0.166 4.166 12 C 0.551 3.449 13 O -0.551 6.551 14 N -0.717 5.717 15 C 0.121 3.879 16 C 0.011 3.989 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.046 4.046 26 C -0.159 4.159 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.396 0.604 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.261 0.739 48 H 0.137 0.863 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.092 -17.118 -0.004 33.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.018 4.018 7 O -0.227 6.227 8 C 0.103 3.897 9 C -0.238 4.238 10 C -0.040 4.040 11 C -0.170 4.170 12 C 0.338 3.662 13 O -0.431 6.431 14 N -0.367 5.367 15 C -0.001 4.001 16 C -0.026 4.026 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.064 4.064 26 C -0.178 4.178 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.231 0.769 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.071 0.929 48 H 0.155 0.845 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.683 -17.454 -0.004 33.576 hybrid contribution 0.791 0.476 0.000 0.923 sum -27.892 -16.978 -0.004 32.653 Atomic orbital electron populations 1.21780 0.95837 1.01651 1.01862 1.21541 0.95945 0.96788 1.02083 1.21602 0.94724 0.96984 1.02402 1.21519 0.95958 0.95490 1.02575 1.21560 0.92393 0.97838 1.03875 1.22895 0.95461 0.81777 1.01710 1.86007 1.19108 1.29468 1.88069 1.19220 0.82147 0.94215 0.94123 1.21190 0.94015 0.98159 1.10484 1.21062 0.94072 0.96844 0.92027 1.20040 0.93619 0.94192 1.09110 1.18159 0.87335 0.83713 0.76985 1.90739 1.61056 1.40209 1.51121 1.46267 1.10023 1.06984 1.73412 1.21753 0.76571 1.00809 1.00933 1.19338 0.97493 0.87877 0.97881 1.21089 0.91256 0.92404 1.51200 0.92171 1.24991 0.98296 0.95980 0.94976 1.69964 1.34656 0.98198 1.50498 0.86463 0.85228 0.78316 0.77608 1.19565 1.20937 1.20940 1.21219 0.92272 0.98685 0.94258 1.20349 0.95022 0.94900 1.07527 0.92731 0.92726 0.92777 0.92002 0.92004 0.91786 0.91782 0.91575 0.91569 0.90725 0.90718 0.91800 0.91793 0.85066 0.84393 0.76893 0.92402 0.92412 0.95893 0.95895 0.92903 0.84536 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.13 -0.52 5.93 -26.73 -0.16 -0.68 16 3 C -0.12 -0.51 5.21 -26.73 -0.14 -0.65 16 4 C -0.12 -0.51 5.21 -26.73 -0.14 -0.65 16 5 C -0.12 -0.66 5.58 -26.73 -0.15 -0.81 16 6 C 0.06 0.39 4.73 37.16 0.18 0.57 16 7 O -0.31 -3.15 10.12 -18.81 -0.19 -3.34 16 8 C 0.15 1.65 6.70 -39.02 -0.26 1.39 16 9 C -0.22 -2.37 9.01 -39.49 -0.36 -2.73 16 10 C -0.02 -0.27 9.58 -39.22 -0.38 -0.65 16 11 C -0.17 -2.41 5.87 -104.96 -0.62 -3.03 16 12 C 0.55 9.97 7.76 -12.44 -0.10 9.87 16 13 O -0.55 -11.80 16.34 5.29 0.09 -11.72 16 14 N -0.72 -12.97 5.51 -61.33 -0.34 -13.31 16 15 C 0.12 2.63 5.61 -4.04 -0.02 2.60 16 16 C 0.01 0.29 5.09 -27.89 -0.14 0.14 16 17 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 21 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.05 -0.55 9.53 -39.22 -0.37 -0.93 16 26 C -0.16 -1.77 9.97 -39.50 -0.39 -2.17 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.40 7.64 -51.93 -0.40 0.00 16 39 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.13 1.08 6.28 -52.48 -0.33 0.75 16 41 H 0.14 1.78 7.64 -52.49 -0.40 1.38 16 42 H 0.40 6.16 6.49 -40.82 -0.27 5.90 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.14 1.43 6.39 -52.48 -0.34 1.10 16 49 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 404.76 15.07 6.10 6.10 Total: -1.00 -32.27 404.76 -10.15 -42.42 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.43 Total: 0.04 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -3.09 Total: -11.20 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.40 Total: -38.70 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.10 Total: -15.06 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.27 -10.15 -42.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784139222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.043 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds