Wall clock time and date at job start Tue Mar 31 2020 12:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47105 * 2 1 4 4 C 1.52998 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46896 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47420 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47632 * 179.97438 * 6 5 4 8 8 C 1.35703 * 117.00248 * 179.97438 * 7 6 5 9 9 C 1.39001 * 119.91238 * 0.30191 * 8 7 6 10 10 C 1.37701 * 120.09036 * 180.25651 * 9 8 7 11 11 C 1.39740 * 119.91009 * 359.43945 * 10 9 8 12 12 C 1.47594 * 120.08984 * 180.30153 * 11 10 9 13 13 O 1.21587 * 119.99976 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00311 * 180.02562 * 12 11 10 15 15 C 1.46507 * 120.00361 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47163 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47034 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00364 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99970 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00308 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47211 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47351 * 119.99837 * 21 19 17 24 24 H 1.48498 * 109.47077 * 240.00160 * 21 19 17 25 25 C 1.39733 * 119.82362 * 0.28485 * 11 10 9 26 26 C 1.37709 * 119.90833 * 359.97438 * 25 11 10 27 27 H 1.08992 * 109.47609 * 300.00460 * 1 2 3 28 28 H 1.08999 * 109.47069 * 60.00806 * 1 2 3 29 29 H 1.09006 * 109.46676 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47463 * 239.99820 * 2 1 3 31 31 H 1.09005 * 109.47293 * 119.99580 * 2 1 3 32 32 H 1.08992 * 109.47262 * 59.99328 * 3 2 1 33 33 H 1.08999 * 109.46499 * 299.99543 * 3 2 1 34 34 H 1.09001 * 109.47463 * 59.99820 * 4 3 2 35 35 H 1.08999 * 109.47069 * 299.99193 * 4 3 2 36 36 H 1.08992 * 109.47364 * 59.99393 * 5 4 3 37 37 H 1.09005 * 109.47271 * 299.99613 * 5 4 3 38 38 H 1.09007 * 109.46974 * 59.98989 * 6 5 4 39 39 H 1.09005 * 109.46584 * 300.00035 * 6 5 4 40 40 H 1.08004 * 119.95747 * 359.97438 * 9 8 7 41 41 H 1.08002 * 120.04909 * 179.72495 * 10 9 8 42 42 H 0.97004 * 119.99698 * 359.97438 * 14 12 11 43 43 H 1.08999 * 109.46594 * 299.99752 * 15 14 12 44 44 H 1.08991 * 109.46752 * 59.99612 * 15 14 12 45 45 H 1.08997 * 109.47263 * 300.00438 * 16 15 14 46 46 H 1.09005 * 109.47165 * 59.99794 * 16 15 14 47 47 H 0.96999 * 120.00277 * 179.97438 * 20 19 17 48 48 H 1.08003 * 120.04691 * 180.02562 * 25 11 10 49 49 H 1.07999 * 119.95155 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 0.0013 7 8 6.0862 4.2324 0.0001 8 6 7.4316 4.4103 0.0015 9 6 8.2767 3.3067 -0.0023 10 6 9.6423 3.4829 0.0046 11 6 10.1784 4.7734 0.0034 12 6 11.6416 4.9669 0.0040 13 8 12.3823 4.0026 0.0049 14 7 12.1568 6.2123 0.0034 15 6 13.6092 6.4043 0.0034 16 6 13.9257 7.9011 0.0021 17 6 15.4197 8.0986 0.0027 18 1 16.0776 7.2423 0.0035 19 6 15.9466 9.3727 0.0012 20 7 15.1455 10.4158 -0.0003 21 14 17.7985 9.6176 0.0012 22 1 18.4728 8.2945 0.0037 23 1 18.1978 10.3749 -1.2121 24 1 18.1972 10.3780 1.2128 25 6 9.3255 5.8802 0.0014 26 6 7.9608 5.6955 0.0001 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9290 0.8909 36 1 3.7161 3.3994 0.8894 37 1 3.7170 3.3984 -0.8905 38 1 5.9740 2.3705 -0.8880 39 1 5.9725 2.3720 0.8920 40 1 7.8616 2.3096 -0.0059 41 1 10.2983 2.6250 0.0061 42 1 11.5658 6.9815 0.0023 43 1 14.0366 5.9429 0.8937 44 1 14.0367 5.9421 -0.8862 45 1 13.4982 8.3621 -0.8883 46 1 13.4980 8.3638 0.8916 47 1 15.5162 11.3121 -0.0010 48 1 9.7359 6.8792 0.0002 49 1 7.3010 6.5504 -0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784139222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:46 Heat of formation + Delta-G solvation = -109.778754 kcal Electronic energy + Delta-G solvation = -24624.036256 eV Core-core repulsion = 20935.044693 eV Total energy + Delta-G solvation = -3688.991563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49514 -40.51008 -38.33333 -37.10410 -36.63240 -34.86625 -33.91551 -32.35971 -31.94298 -30.69023 -29.19861 -26.87679 -25.52546 -24.33310 -23.53308 -22.80760 -21.97430 -21.87939 -21.39853 -19.40731 -18.72590 -18.35234 -17.42890 -17.22554 -16.50307 -16.50035 -16.38584 -16.34703 -15.87690 -15.07516 -15.01455 -14.91101 -14.79549 -14.55894 -14.31359 -14.27109 -13.98147 -13.64387 -13.56206 -13.22150 -12.98991 -12.97848 -12.81637 -12.52870 -12.44368 -12.26166 -11.99197 -11.90652 -11.73002 -11.67587 -11.53409 -11.50806 -11.45178 -11.34404 -10.96576 -10.60792 -10.14888 -10.09025 -9.29098 -8.23935 -6.34272 -0.15117 0.28805 1.41423 1.42514 1.55592 1.82246 2.08324 2.22288 2.45339 2.81428 3.11076 3.68681 3.74348 3.77808 3.89119 3.91416 4.04919 4.15434 4.16215 4.27346 4.35074 4.38586 4.48236 4.48470 4.49180 4.49577 4.63571 4.78452 4.84204 4.84728 4.91857 4.95803 5.05604 5.06239 5.12405 5.18679 5.19902 5.25994 5.27045 5.32263 5.36528 5.46878 5.48250 5.52515 5.57708 5.59282 5.78592 6.16097 6.33104 6.58774 6.78833 7.21125 7.35178 8.88194 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.050974 B = 0.001461 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.172804 B =19166.356289 C =19663.269702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.114 4.114 6 C 0.048 3.952 7 O -0.320 6.320 8 C 0.155 3.845 9 C -0.213 4.213 10 C -0.027 4.027 11 C -0.191 4.191 12 C 0.552 3.448 13 O -0.591 6.591 14 N -0.713 5.713 15 C 0.140 3.860 16 C 0.022 3.978 17 C -0.547 4.547 18 H 0.058 0.942 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.042 4.042 26 C -0.162 4.162 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.409 0.591 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.266 0.734 48 H 0.149 0.851 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.334 -17.671 -0.007 35.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.027 4.027 7 O -0.233 6.233 8 C 0.108 3.892 9 C -0.232 4.232 10 C -0.046 4.046 11 C -0.194 4.194 12 C 0.341 3.659 13 O -0.474 6.474 14 N -0.363 5.363 15 C 0.016 3.984 16 C -0.015 4.015 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.190 4.190 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.060 4.060 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.176 0.824 41 H 0.151 0.849 42 H 0.246 0.754 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.075 0.925 48 H 0.166 0.834 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -29.965 -18.004 -0.007 34.957 hybrid contribution 1.002 0.605 0.001 1.170 sum -28.963 -17.399 -0.006 33.787 Atomic orbital electron populations 1.21793 0.95837 1.01799 1.01840 1.21541 0.95976 0.96697 1.02150 1.21587 0.94716 0.97031 1.02282 1.21486 0.95878 0.94717 1.03003 1.21536 0.91445 0.98549 1.03635 1.23182 0.96251 0.80508 1.02730 1.86021 1.18266 1.31459 1.87535 1.19376 0.82808 0.94279 0.92716 1.21384 0.92877 0.99559 1.09351 1.21117 0.95112 0.96115 0.92274 1.19801 0.91296 0.95768 1.12537 1.18697 0.88880 0.82733 0.75546 1.90706 1.62428 1.41245 1.52997 1.46062 1.08652 1.07964 1.73670 1.21272 0.78807 0.98296 0.99980 1.19144 0.96220 0.89667 0.96477 1.21489 0.92758 0.92743 1.51526 0.92332 1.25846 1.03160 0.95622 0.94353 1.70061 1.36749 0.98716 1.51042 0.85403 0.79371 0.78411 0.77908 1.18992 1.20195 1.20204 1.21319 0.92593 0.98530 0.93593 1.20581 0.94722 0.95863 1.06878 0.92762 0.92756 0.92571 0.91929 0.91932 0.91924 0.91918 0.91144 0.91140 0.90990 0.90981 0.90745 0.90742 0.82361 0.84878 0.75389 0.93379 0.93389 0.97169 0.97174 0.92527 0.83352 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.13 -0.87 5.93 30.60 0.18 -0.69 16 3 C -0.12 -0.83 5.21 30.60 0.16 -0.67 16 4 C -0.11 -0.75 5.21 30.59 0.16 -0.59 16 5 C -0.11 -1.02 5.58 30.59 0.17 -0.85 16 6 C 0.05 0.54 4.73 71.98 0.34 0.88 16 7 O -0.32 -5.59 10.12 -90.23 -0.91 -6.51 16 8 C 0.15 3.07 6.70 22.63 0.15 3.22 16 9 C -0.21 -4.14 9.01 22.33 0.20 -3.94 16 10 C -0.03 -0.68 9.58 22.51 0.22 -0.47 16 11 C -0.19 -5.46 5.87 -20.08 -0.12 -5.57 16 12 C 0.55 20.26 7.76 86.71 0.67 20.94 16 13 O -0.59 -25.96 16.34 -3.99 -0.07 -26.03 16 14 N -0.71 -26.16 5.51 -466.22 -2.57 -28.73 16 15 C 0.14 6.20 5.61 86.38 0.48 6.69 16 16 C 0.02 1.14 5.09 29.85 0.15 1.29 16 17 C -0.55 -30.80 9.11 25.60 0.23 -30.57 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 19 C 0.01 0.51 5.46 84.65 0.46 0.97 16 20 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 21 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 C -0.04 -0.96 9.53 22.51 0.21 -0.75 16 26 C -0.16 -3.26 9.97 22.33 0.22 -3.04 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.07 0.71 7.64 -2.38 -0.02 0.69 16 39 H 0.07 0.71 7.66 -2.38 -0.02 0.69 16 40 H 0.16 2.13 6.28 -2.91 -0.02 2.11 16 41 H 0.13 3.43 7.64 -2.91 -0.02 3.40 16 42 H 0.41 12.76 6.49 -92.71 -0.60 12.16 16 43 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 47 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 48 H 0.15 2.94 6.39 -2.91 -0.02 2.93 16 49 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -68.91 404.76 3.70 -65.21 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.31 Total: 17.82 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.62 Total: -13.54 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.28 Total: -82.79 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.98 Total: -32.53 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.91 3.70 -65.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784139222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.569 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds