Wall clock time and date at job start Tue Mar 31 2020 12:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99608 * 2 1 4 4 N 1.46911 * 109.46738 * 124.31474 * 3 2 1 5 5 C 1.46898 * 110.99813 * 62.66395 * 4 3 2 6 6 C 1.50703 * 109.47206 * 66.04540 * 5 4 3 7 7 H 1.08008 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00481 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99761 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00368 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47215 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47660 * 119.99946 * 10 8 6 13 13 H 1.48507 * 109.46861 * 239.99928 * 10 8 6 14 14 C 1.46897 * 111.00009 * 298.71338 * 4 3 2 15 15 C 1.50703 * 109.47005 * 288.10893 * 14 4 3 16 16 C 1.38287 * 120.00312 * 105.13686 * 15 14 4 17 17 C 1.38203 * 120.14518 * 179.97438 * 16 15 14 18 18 C 1.50705 * 119.92119 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47368 * 60.00217 * 18 17 16 20 20 C 1.53003 * 109.47045 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47216 * 299.99679 * 18 17 16 22 22 C 1.38281 * 120.14904 * 359.97438 * 17 16 15 23 23 C 1.38523 * 120.00086 * 359.72240 * 22 17 16 24 24 O 1.35994 * 120.07307 * 180.27074 * 23 22 17 25 25 C 1.38526 * 119.99666 * 285.11666 * 15 14 4 26 26 O 1.35988 * 120.07805 * 0.02562 * 25 15 14 27 27 H 1.07996 * 119.99637 * 179.97438 * 1 2 3 28 28 H 1.07992 * 119.99975 * 0.02562 * 1 2 3 29 29 H 1.07992 * 120.00337 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47129 * 4.32234 * 3 2 1 31 31 H 1.08991 * 109.47545 * 244.31520 * 3 2 1 32 32 H 1.08999 * 109.47114 * 186.04162 * 5 4 3 33 33 H 1.09000 * 109.47303 * 306.05176 * 5 4 3 34 34 H 0.96997 * 120.00064 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47134 * 168.10865 * 14 4 3 36 36 H 1.08997 * 109.47214 * 48.10738 * 14 4 3 37 37 H 1.08002 * 119.92325 * 359.97438 * 16 15 14 38 38 H 1.08999 * 109.47343 * 59.99549 * 19 18 17 39 39 H 1.08999 * 109.47072 * 179.97438 * 19 18 17 40 40 H 1.08998 * 109.46722 * 299.99669 * 19 18 17 41 41 H 1.09007 * 109.47269 * 59.99349 * 20 18 17 42 42 H 1.08999 * 109.47572 * 179.97438 * 20 18 17 43 43 H 1.09003 * 109.47293 * 299.99959 * 20 18 17 44 44 H 1.08998 * 109.47106 * 60.00189 * 21 18 17 45 45 H 1.08996 * 109.47247 * 180.02562 * 21 18 17 46 46 H 1.08994 * 109.47399 * 300.00403 * 21 18 17 47 47 H 1.08007 * 119.99925 * 179.97438 * 22 17 16 48 48 H 0.96692 * 114.00441 * 270.29850 * 24 23 22 49 49 H 0.96704 * 114.00141 * 89.99368 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9845 1.3388 1.1440 5 6 3.9916 0.2744 1.0405 6 6 4.8830 0.5398 -0.1453 7 1 4.7181 1.4123 -0.7603 8 6 5.9090 -0.3310 -0.4452 9 7 6.1101 -1.3931 0.3039 10 14 7.0142 -0.0016 -1.9146 11 1 6.5820 1.2489 -2.5887 12 1 8.4189 0.1433 -1.4550 13 1 6.9201 -1.1357 -2.8688 14 6 2.2508 1.2477 2.4134 15 6 1.5202 2.5414 2.6653 16 6 0.1505 2.6082 2.4864 17 6 -0.5226 3.7930 2.7171 18 6 -2.0151 3.8603 2.5200 19 6 -2.6985 2.8582 3.4525 20 6 -2.5085 5.2730 2.8390 21 6 -2.3537 3.5184 1.0676 22 6 0.1704 4.9168 3.1283 23 6 1.5416 4.8551 3.3155 24 8 2.2237 5.9579 3.7252 25 6 2.2205 3.6636 3.0765 26 8 3.5674 3.5998 3.2528 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3577 2.1321 0.0774 31 1 2.6309 1.3972 -0.9260 32 1 4.5929 0.2535 1.9494 33 1 3.4930 -0.6863 0.9123 34 1 6.8321 -2.0055 0.0932 35 1 2.9529 1.0627 3.2264 36 1 1.5328 0.4293 2.3601 37 1 -0.3943 1.7326 2.1657 38 1 -2.4573 3.1018 4.4872 39 1 -3.7780 2.9072 3.3103 40 1 -2.3470 1.8519 3.2248 41 1 -2.0216 5.9868 2.1743 42 1 -3.5880 5.3219 2.6960 43 1 -2.2673 5.5172 3.8736 44 1 -2.0022 2.5121 0.8398 45 1 -3.4332 3.5675 0.9249 46 1 -1.8669 4.2323 0.4032 47 1 -0.3580 5.8416 3.3075 48 1 2.5427 6.5144 3.0017 49 1 4.0785 3.8144 2.4604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:23 Heat of formation + Delta-G solvation = -69.447538 kcal Electronic energy + Delta-G solvation = -28149.532467 eV Core-core repulsion = 24462.289798 eV Total energy + Delta-G solvation = -3687.242670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51414 -39.14107 -38.92625 -37.65636 -35.91466 -34.87865 -33.72748 -31.99231 -29.77225 -29.06751 -28.25574 -28.03396 -27.32877 -25.50195 -23.74419 -23.11491 -22.33912 -20.56063 -19.91900 -19.29683 -18.35671 -18.24177 -17.38848 -17.07665 -16.74828 -16.48140 -15.85180 -15.75705 -15.55673 -15.28548 -15.01014 -14.79776 -14.58464 -14.13019 -14.04812 -13.87765 -13.36105 -13.28858 -13.16133 -12.92617 -12.84685 -12.64681 -12.61472 -12.52444 -12.48804 -12.36853 -12.26246 -12.17439 -11.80336 -11.69029 -11.60256 -11.46311 -11.35363 -10.89564 -10.61618 -10.24872 -9.61793 -9.26182 -8.97478 -8.18111 -6.27149 0.26779 0.29473 1.39972 1.40891 1.41876 1.54395 2.40292 2.55193 3.15278 3.20875 3.40311 3.46006 3.71117 3.81615 4.07944 4.12743 4.17820 4.27347 4.28873 4.31968 4.44657 4.52849 4.60331 4.72278 4.82000 4.85438 4.93281 4.95487 4.98627 5.00630 5.06288 5.08740 5.11266 5.13939 5.26247 5.28793 5.32629 5.37109 5.46743 5.50713 5.56062 5.65694 5.68788 5.76139 5.83345 5.86107 6.09459 6.35417 6.62769 6.67682 6.89166 7.02991 7.42119 8.93090 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003850 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.409592 B = 7271.092567 C = 8336.169253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.192 4.192 3 C 0.094 3.906 4 N -0.520 5.520 5 C 0.208 3.792 6 C -0.512 4.512 7 H 0.064 0.936 8 C 0.002 3.998 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.102 3.898 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.061 4.061 18 C -0.025 4.025 19 C -0.140 4.140 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.134 4.134 23 C 0.071 3.929 24 O -0.501 6.501 25 C 0.079 3.921 26 O -0.502 6.502 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.067 0.933 32 H -0.005 1.005 33 H -0.027 1.027 34 H 0.262 0.738 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.133 0.867 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.153 0.847 48 H 0.403 0.597 49 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.759 13.438 2.188 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.212 4.212 3 C -0.033 4.033 4 N -0.242 5.242 5 C 0.082 3.918 6 C -0.551 4.551 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.026 4.026 15 C -0.087 4.087 16 C -0.122 4.122 17 C -0.062 4.062 18 C -0.025 4.025 19 C -0.197 4.197 20 C -0.200 4.200 21 C -0.196 4.196 22 C -0.152 4.152 23 C 0.026 3.974 24 O -0.313 6.313 25 C 0.033 3.967 26 O -0.313 6.313 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.013 0.987 33 H -0.009 1.009 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.150 0.850 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.171 0.829 48 H 0.261 0.739 49 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -19.621 13.387 3.332 23.985 hybrid contribution 1.355 -1.068 -1.339 2.184 sum -18.265 12.319 1.993 22.121 Atomic orbital electron populations 1.23943 0.94582 1.02683 0.99837 1.23551 0.97274 0.99566 1.00836 1.21197 0.93770 0.93862 0.94509 1.62266 1.13454 1.47946 1.00557 1.19380 0.89217 0.87500 0.95673 1.21439 1.13434 1.08466 1.11720 0.91746 1.25857 0.99152 0.94833 0.99748 1.70101 1.32530 1.14325 1.40731 0.85393 0.78298 0.78361 0.78916 1.18499 1.20746 1.20743 1.20766 0.95747 0.93328 0.92780 1.20040 0.94361 0.94845 0.99480 1.20916 0.92078 0.98689 1.00527 1.19874 0.96270 0.92070 0.97956 1.19524 0.88676 0.97415 0.96860 1.21910 1.00925 0.98197 0.98643 1.21968 1.01900 0.94492 1.01666 1.21916 1.02278 1.01632 0.93821 1.21478 0.92168 1.00483 1.01068 1.18858 0.91226 0.86400 1.00894 1.84831 1.74232 1.35349 1.36900 1.18850 0.84197 0.92869 1.00747 1.84749 1.14372 1.92289 1.39899 0.87682 0.86765 0.90362 0.90039 0.91501 0.98698 1.00934 0.92901 0.92810 0.94158 0.84971 0.93069 0.90638 0.92805 0.91984 0.90902 0.92406 0.92636 0.90743 0.92700 0.82933 0.73860 0.74450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 13.93 67.77 0.94 -3.58 16 2 C -0.19 -6.70 7.46 25.64 0.19 -6.51 16 3 C 0.09 3.48 5.48 85.56 0.47 3.95 16 4 N -0.52 -21.72 4.65 -909.94 -4.23 -25.95 16 5 C 0.21 10.96 4.55 85.56 0.39 11.35 16 6 C -0.51 -28.38 8.48 25.60 0.22 -28.16 16 7 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 8 C 0.00 0.10 5.46 84.65 0.46 0.56 16 9 N -0.94 -56.48 13.29 21.45 0.28 -56.20 16 10 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.10 3.84 4.57 85.56 0.39 4.23 16 15 C -0.09 -2.73 4.67 -19.78 -0.09 -2.83 16 16 C -0.10 -2.64 7.83 22.27 0.17 -2.47 16 17 C -0.06 -1.31 4.76 -19.86 -0.09 -1.41 16 18 C -0.02 -0.38 0.85 -52.93 -0.05 -0.43 16 19 C -0.14 -2.05 8.29 71.98 0.60 -1.45 16 20 C -0.14 -1.76 7.13 71.98 0.51 -1.25 16 21 C -0.14 -1.95 8.28 71.98 0.60 -1.36 16 22 C -0.13 -2.97 8.91 22.35 0.20 -2.77 16 23 C 0.07 1.93 6.72 22.57 0.15 2.09 16 24 O -0.50 -12.35 13.29 -79.63 -1.06 -13.41 16 25 C 0.08 2.55 6.69 22.57 0.15 2.70 16 26 O -0.50 -17.71 12.62 -79.57 -1.00 -18.72 16 27 H 0.10 2.42 8.06 -2.91 -0.02 2.40 16 28 H 0.11 2.47 7.22 -2.91 -0.02 2.45 16 29 H 0.08 3.27 6.74 -2.91 -0.02 3.25 16 30 H 0.08 2.61 6.70 -2.39 -0.02 2.59 16 31 H 0.07 2.75 6.79 -2.39 -0.02 2.73 16 32 H -0.01 -0.30 7.86 -2.39 -0.02 -0.32 16 33 H -0.03 -1.53 6.26 -2.39 -0.01 -1.55 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.05 2.28 7.68 -2.39 -0.02 2.27 16 36 H 0.04 1.48 6.58 -2.39 -0.02 1.47 16 37 H 0.13 3.11 6.35 -2.91 -0.02 3.09 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.85 7.38 -2.39 -0.02 0.83 16 41 H 0.06 0.73 7.51 -2.38 -0.02 0.72 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.74 7.51 -2.39 -0.02 0.72 16 44 H 0.05 0.83 7.04 -2.39 -0.02 0.81 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.15 2.69 5.89 -2.91 -0.02 2.67 16 48 H 0.40 5.99 9.06 -74.06 -0.67 5.32 16 49 H 0.40 12.33 9.06 -74.05 -0.67 11.66 16 Total: -1.00 -68.26 388.59 0.85 -67.41 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -0.38 Total: 28.09 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 5.21 Total: -27.34 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -3.95 Total: -82.15 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -2.06 Total: -32.12 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.26 0.85 -67.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.036 kcal (2) G-P(sol) polarization free energy of solvation -68.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds