Wall clock time and date at job start Tue Mar 31 2020 12:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 C 1.52997 * 109.47033 * 240.00017 * 2 1 3 5 5 C 1.53001 * 109.47022 * 294.99991 * 4 2 1 6 6 H 1.08999 * 109.47435 * 54.99569 * 5 4 2 7 7 O 1.42909 * 109.46681 * 294.99957 * 5 4 2 8 8 C 1.52999 * 109.46890 * 175.00307 * 5 4 2 9 9 N 1.46507 * 109.46673 * 184.99544 * 8 5 4 10 10 C 1.34776 * 119.99684 * 179.97438 * 9 8 5 11 11 O 1.21285 * 120.00437 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99919 * 180.02562 * 10 9 8 13 13 C 1.53003 * 109.47351 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.46923 * 305.37259 * 13 12 10 15 15 C 1.50703 * 109.46989 * 65.36802 * 13 12 10 16 16 H 1.07996 * 119.99667 * 34.62241 * 15 13 12 17 17 C 1.37873 * 120.00125 * 214.61977 * 15 13 12 18 18 N 1.31513 * 120.00131 * 186.44815 * 17 15 13 19 19 Si 1.86804 * 119.99848 * 6.45043 * 17 15 13 20 20 H 1.48500 * 109.46855 * 85.00786 * 19 17 15 21 21 H 1.48500 * 109.46852 * 205.00750 * 19 17 15 22 22 H 1.48499 * 109.47116 * 325.00918 * 19 17 15 23 23 C 1.50697 * 109.47172 * 185.36972 * 13 12 10 24 24 C 1.38242 * 120.00028 * 296.35692 * 23 13 12 25 25 C 1.38229 * 119.99861 * 179.78876 * 24 23 13 26 26 C 1.38242 * 120.00089 * 0.44463 * 25 24 23 27 27 C 1.38238 * 119.99833 * 359.81170 * 26 25 24 28 28 C 1.38228 * 120.00236 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47493 * 60.00028 * 1 2 3 30 30 H 1.09003 * 109.46971 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46996 * 299.99994 * 1 2 3 32 32 H 1.08992 * 109.47044 * 119.99405 * 2 1 3 33 33 H 1.08995 * 109.47546 * 59.99844 * 3 2 1 34 34 H 1.09003 * 109.47057 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46990 * 300.00069 * 3 2 1 36 36 H 1.08999 * 109.47234 * 54.99668 * 4 2 1 37 37 H 1.09003 * 109.46854 * 174.99788 * 4 2 1 38 38 H 0.96700 * 113.99795 * 299.99479 * 7 5 4 39 39 H 1.08998 * 109.46970 * 304.99559 * 8 5 4 40 40 H 1.08994 * 109.47302 * 64.99727 * 8 5 4 41 41 H 0.97000 * 120.00016 * 0.02562 * 9 8 5 42 42 H 1.08998 * 109.47209 * 300.00118 * 12 10 9 43 43 H 1.09004 * 109.47093 * 60.00318 * 12 10 9 44 44 H 0.96999 * 119.99725 * 180.02562 * 18 17 15 45 45 H 1.08003 * 119.99658 * 0.02562 * 24 23 13 46 46 H 1.07999 * 120.00328 * 180.27163 * 25 24 23 47 47 H 1.07998 * 120.00156 * 179.83613 * 26 25 24 48 48 H 1.07998 * 119.99759 * 180.02562 * 27 26 25 49 49 H 1.07999 * 120.00432 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6352 -2.1955 -1.1879 6 1 0.5563 -2.2707 -1.0526 7 8 2.2981 -2.8261 -0.0901 8 6 2.0354 -2.8888 -2.4918 9 7 1.5426 -4.2685 -2.4823 10 6 1.7781 -5.0754 -3.5358 11 8 2.3983 -4.6595 -4.4916 12 6 1.2708 -6.4943 -3.5263 13 6 1.6711 -7.1878 -4.8301 14 1 1.3178 -6.6001 -5.6775 15 6 3.1718 -7.3097 -4.8941 16 1 3.7389 -7.4774 -3.9904 17 6 3.8207 -7.2072 -6.1062 18 7 5.1131 -7.4389 -6.1819 19 14 2.8643 -6.7390 -7.6410 20 1 2.7651 -5.2601 -7.7305 21 1 3.5667 -7.2616 -8.8405 22 1 1.5008 -7.3234 -7.5721 23 6 1.0530 -8.5613 -4.8788 24 6 1.4120 -9.5144 -3.9440 25 6 0.8418 -10.7729 -3.9860 26 6 -0.0806 -11.0814 -4.9684 27 6 -0.4357 -10.1300 -5.9064 28 6 0.1312 -8.8701 -5.8617 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6053 -0.2618 -2.1369 37 1 3.1263 -0.6443 -1.2951 38 1 3.2631 -2.7972 -0.1443 39 1 1.6009 -2.3536 -3.3361 40 1 3.1214 -2.8915 -2.5834 41 1 1.0463 -4.6010 -1.7181 42 1 1.7052 -7.0299 -2.6822 43 1 0.1847 -6.4913 -3.4346 44 1 5.5697 -7.3664 -7.0346 45 1 2.1352 -9.2744 -3.1785 46 1 1.1190 -11.5161 -3.2531 47 1 -0.5242 -12.0655 -5.0028 48 1 -1.1566 -10.3709 -6.6736 49 1 -0.1458 -8.1269 -6.5947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793665190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:03 Heat of formation + Delta-G solvation = -113.705765 kcal Electronic energy + Delta-G solvation = -26757.045131 eV Core-core repulsion = 23067.883281 eV Total energy + Delta-G solvation = -3689.161851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83949 -39.92691 -39.16719 -36.30747 -35.88045 -35.07985 -33.72276 -31.61320 -31.38434 -30.24197 -28.16880 -28.00570 -26.50352 -24.23990 -23.29366 -22.84929 -21.75490 -20.91488 -20.65902 -19.02263 -18.17143 -17.64678 -17.19961 -17.12859 -16.55345 -16.29107 -16.07052 -15.66550 -15.46563 -15.34090 -14.94699 -14.73932 -14.63841 -14.30816 -14.20907 -13.99136 -13.83010 -13.53952 -13.28839 -13.19363 -13.00161 -12.80938 -12.68272 -12.63314 -12.26042 -12.09056 -11.94492 -11.90771 -11.79699 -11.52516 -11.46773 -11.36913 -11.09749 -11.00566 -10.62893 -10.47048 -9.95314 -9.61140 -9.29455 -8.22848 -6.18705 0.69383 0.74159 1.30452 1.38573 1.40951 1.92895 2.35301 2.41297 3.08284 3.25010 3.45965 3.65184 3.89086 4.01774 4.10551 4.13584 4.18573 4.25545 4.31442 4.33131 4.44769 4.46654 4.50170 4.62588 4.65147 4.76176 4.82282 4.85428 4.86477 4.87844 4.97232 5.02147 5.10115 5.10734 5.16040 5.21086 5.33382 5.38813 5.41388 5.48579 5.54535 5.60959 5.69406 5.77754 5.83362 6.03381 6.33717 6.37003 6.72504 6.78891 6.80168 7.45148 7.55231 8.94222 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.002974 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.633348 B = 9413.977495 C =10394.511362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.142 4.142 5 C 0.111 3.889 6 H 0.114 0.886 7 O -0.566 6.566 8 C 0.088 3.912 9 N -0.722 5.722 10 C 0.509 3.491 11 O -0.564 6.564 12 C -0.113 4.113 13 C 0.058 3.942 14 H 0.032 0.968 15 C -0.465 4.465 16 H 0.034 0.966 17 C 0.024 3.976 18 N -0.953 5.953 19 Si 0.923 3.077 20 H -0.287 1.287 21 H -0.298 1.298 22 H -0.231 1.231 23 C -0.063 4.063 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.153 4.153 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.386 0.614 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.412 0.588 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.258 0.742 45 H 0.109 0.891 46 H 0.139 0.861 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.821 9.028 12.848 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.180 4.180 5 C 0.052 3.948 6 H 0.132 0.868 7 O -0.373 6.373 8 C -0.037 4.037 9 N -0.377 5.377 10 C 0.296 3.704 11 O -0.441 6.441 12 C -0.153 4.153 13 C 0.038 3.962 14 H 0.050 0.950 15 C -0.502 4.502 16 H 0.052 0.948 17 C -0.172 4.172 18 N -0.595 5.595 19 Si 0.749 3.251 20 H -0.214 1.214 21 H -0.225 1.225 22 H -0.154 1.154 23 C -0.064 4.064 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.158 4.158 27 C -0.142 4.142 28 C -0.171 4.171 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.249 0.751 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.067 0.933 45 H 0.127 0.873 46 H 0.157 0.843 47 H 0.164 0.836 48 H 0.158 0.842 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.844 9.225 12.234 20.650 hybrid contribution 1.017 0.423 -1.014 1.497 sum -12.827 9.648 11.221 19.584 Atomic orbital electron populations 1.21913 0.95004 1.01855 1.02023 1.20996 0.96121 0.96047 0.97670 1.21844 1.00978 0.95630 1.02012 1.22267 1.02002 0.94272 0.99506 1.22135 0.98424 0.90951 0.83335 0.86815 1.86537 1.24887 1.80379 1.45537 1.22086 0.99095 0.82781 0.99700 1.45821 1.58733 1.12474 1.20636 1.21059 0.78805 0.88466 0.82067 1.90719 1.40561 1.76521 1.36299 1.21598 1.01825 0.91436 1.00487 1.17995 0.94054 0.89628 0.94508 0.94974 1.20805 0.90341 1.45949 0.93147 0.94812 1.25600 0.95219 0.94676 1.01749 1.70036 1.10720 1.52588 1.26171 0.86129 0.81161 0.78350 0.79423 1.21375 1.22467 1.15412 1.20500 0.93563 0.97688 0.94647 1.21009 0.99293 0.93919 0.99544 1.21395 0.97224 0.96135 0.99545 1.21339 0.98934 1.00098 0.95420 1.21334 1.00326 0.92919 0.99616 1.21258 0.98708 0.98147 0.99035 0.92529 0.92615 0.92288 0.91036 0.92186 0.92743 0.92656 0.90481 0.91070 0.76517 0.91804 0.93250 0.75104 0.88788 0.87736 0.93307 0.87301 0.84312 0.83559 0.84212 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.95 71.98 0.64 -1.29 16 2 C -0.09 -1.22 2.87 -10.79 -0.03 -1.25 16 3 C -0.15 -1.81 9.19 71.98 0.66 -1.15 16 4 C -0.14 -2.13 4.36 30.59 0.13 -2.00 16 5 C 0.11 1.95 2.86 30.59 0.09 2.04 16 6 H 0.11 1.85 6.34 -2.39 -0.02 1.83 16 7 O -0.57 -10.50 12.74 -148.98 -1.90 -12.40 16 8 C 0.09 2.24 5.31 86.38 0.46 2.69 16 9 N -0.72 -20.69 5.50 -463.06 -2.55 -23.23 16 10 C 0.51 20.10 7.58 87.66 0.66 20.76 16 11 O -0.56 -28.74 15.00 -3.05 -0.05 -28.79 16 12 C -0.11 -4.21 4.94 29.85 0.15 -4.06 16 13 C 0.06 2.66 1.28 -12.28 -0.02 2.65 16 14 H 0.03 1.59 4.78 -2.38 -0.01 1.57 16 15 C -0.46 -26.71 6.94 25.60 0.18 -26.53 16 16 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 17 C 0.02 1.45 5.47 84.65 0.46 1.92 16 18 N -0.95 -62.94 13.96 21.45 0.30 -62.64 16 19 Si 0.92 48.84 27.04 68.60 1.85 50.69 16 20 H -0.29 -15.72 7.11 99.48 0.71 -15.01 16 21 H -0.30 -15.60 7.11 99.48 0.71 -14.90 16 22 H -0.23 -10.93 5.14 99.48 0.51 -10.42 16 23 C -0.06 -2.63 4.77 -19.86 -0.09 -2.73 16 24 C -0.12 -4.56 8.87 22.27 0.20 -4.36 16 25 C -0.13 -3.90 10.05 22.27 0.22 -3.67 16 26 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 27 C -0.12 -3.81 10.05 22.27 0.22 -3.58 16 28 C -0.15 -5.76 9.13 22.27 0.20 -5.56 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.74 6.46 -2.39 -0.02 0.72 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.08 7.69 -2.39 -0.02 1.06 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.39 5.67 9.05 -74.06 -0.67 5.00 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.41 9.28 8.47 -92.71 -0.79 8.49 16 42 H 0.09 3.29 7.80 -2.39 -0.02 3.27 16 43 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 45 H 0.11 4.26 7.77 -2.91 -0.02 4.24 16 46 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 47 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 48 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 49 H 0.11 4.05 6.95 -2.91 -0.02 4.03 16 Total: -1.00 -78.59 393.56 1.32 -77.27 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.71 Total: 28.96 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 4.37 Total: -29.86 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.25 Total: -85.87 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.94 Total: -41.19 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.85 Total: 50.69 kcal Total: -78.59 1.32 -77.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793665190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.440 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds