Wall clock time and date at job start Tue Mar 31 2020 12:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41604 * 113.99975 * 2 1 4 4 C 1.46500 * 120.00010 * 270.00496 * 3 2 1 5 5 C 1.53010 * 109.46886 * 264.34994 * 4 3 2 6 6 C 1.53003 * 109.46641 * 62.94859 * 5 4 3 7 7 C 1.52994 * 109.47103 * 182.94858 * 5 4 3 8 8 C 1.52995 * 109.46836 * 302.95153 * 5 4 3 9 9 C 1.34779 * 120.00143 * 89.99858 * 3 2 1 10 10 O 1.21276 * 120.00081 * 185.20697 * 9 3 2 11 11 C 1.50696 * 119.99611 * 5.20731 * 9 3 2 12 12 C 1.53001 * 109.47196 * 179.97438 * 11 9 3 13 13 H 1.09000 * 109.47048 * 53.71623 * 12 11 9 14 14 C 1.50699 * 109.47155 * 293.72319 * 12 11 9 15 15 H 1.08001 * 119.99701 * 325.97684 * 14 12 11 16 16 C 1.37873 * 120.00228 * 145.97289 * 14 12 11 17 17 N 1.31512 * 119.99999 * 181.77663 * 16 14 12 18 18 Si 1.86798 * 119.99941 * 1.77597 * 16 14 12 19 19 H 1.48502 * 109.47127 * 266.87466 * 18 16 14 20 20 H 1.48497 * 109.47186 * 26.87562 * 18 16 14 21 21 H 1.48502 * 109.47015 * 146.87741 * 18 16 14 22 22 C 1.50696 * 109.47181 * 173.72202 * 12 11 9 23 23 C 1.38236 * 120.00369 * 65.20882 * 22 12 11 24 24 C 1.38233 * 120.00064 * 179.81008 * 23 22 12 25 25 C 1.38229 * 120.00058 * 0.39295 * 24 23 22 26 26 C 1.38243 * 120.00072 * 359.85652 * 25 24 23 27 27 C 1.38234 * 119.99760 * 359.95536 * 26 25 24 28 28 H 1.08997 * 109.47417 * 300.00186 * 1 2 3 29 29 H 1.09009 * 109.47296 * 59.99947 * 1 2 3 30 30 H 1.08999 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47499 * 24.35021 * 4 3 2 32 32 H 1.08995 * 109.47173 * 144.35321 * 4 3 2 33 33 H 1.08999 * 109.47028 * 60.00338 * 6 5 4 34 34 H 1.09000 * 109.46764 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47213 * 300.00024 * 6 5 4 36 36 H 1.09003 * 109.47246 * 59.99907 * 7 5 4 37 37 H 1.09000 * 109.47126 * 180.02562 * 7 5 4 38 38 H 1.08999 * 109.47455 * 300.00207 * 7 5 4 39 39 H 1.09000 * 109.47331 * 65.46848 * 8 5 4 40 40 H 1.09005 * 109.46648 * 185.47266 * 8 5 4 41 41 H 1.08997 * 109.47113 * 305.46594 * 8 5 4 42 42 H 1.09003 * 109.47245 * 59.99764 * 11 9 3 43 43 H 1.09002 * 109.47346 * 299.99530 * 11 9 3 44 44 H 0.97004 * 120.00430 * 180.02562 * 17 16 14 45 45 H 1.08003 * 119.99579 * 359.97438 * 23 22 12 46 46 H 1.07996 * 120.00040 * 180.23071 * 24 23 22 47 47 H 1.08001 * 120.00611 * 179.84021 * 25 24 23 48 48 H 1.08000 * 119.99880 * 179.97438 * 26 25 24 49 49 H 1.07996 * 119.99876 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3028 1.9628 -1.2687 5 6 3.7680 1.7243 -1.6395 6 6 4.0020 0.2278 -1.8559 7 6 4.0987 2.4835 -2.9259 8 6 4.6682 2.2228 -0.5073 9 6 2.2790 1.9093 1.1672 10 8 2.6837 3.0525 1.1694 11 6 2.0826 1.1770 2.4696 12 6 2.4640 2.0944 3.6331 13 1 1.9122 3.0310 3.5532 14 6 3.9434 2.3775 3.5855 15 1 4.6274 1.6186 3.2353 16 6 4.4237 3.6053 3.9890 17 7 5.7109 3.8646 3.9146 18 14 3.2462 4.9004 4.6413 19 1 2.8182 5.7857 3.5285 20 1 2.0563 4.2356 5.2307 21 1 3.9280 5.7095 5.6833 22 6 2.1232 1.4202 4.9370 23 6 2.7844 0.2654 5.3115 24 6 2.4745 -0.3509 6.5094 25 6 1.4978 0.1830 7.3290 26 6 0.8330 1.3350 6.9521 27 6 1.1456 1.9535 5.7560 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6598 1.5605 -2.0515 32 1 2.1237 3.0330 -1.1658 33 1 3.3607 -0.1273 -2.6625 34 1 5.0457 0.0579 -2.1204 35 1 3.7664 -0.3131 -0.9394 36 1 3.9318 3.5496 -2.7718 37 1 5.1423 2.3132 -3.1903 38 1 3.4573 2.1283 -3.7325 39 1 4.5012 1.6169 0.3833 40 1 5.7120 2.1426 -0.8110 41 1 4.4327 3.2641 -0.2876 42 1 2.7141 0.2886 2.4857 43 1 1.0378 0.8819 2.5665 44 1 6.0489 4.7283 4.1989 45 1 3.5449 -0.1538 4.6694 46 1 2.9936 -1.2510 6.8038 47 1 1.2538 -0.2998 8.2638 48 1 0.0696 1.7519 7.5923 49 1 0.6260 2.8532 5.4613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804583465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:52 Heat of formation + Delta-G solvation = -14.334397 kcal Electronic energy + Delta-G solvation = -28697.809160 eV Core-core repulsion = 25012.956375 eV Total energy + Delta-G solvation = -3684.852785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.75572 -38.55267 -37.00260 -36.59211 -34.09506 -31.85565 -31.62036 -30.19684 -29.14917 -27.15754 -26.91958 -26.76313 -26.47283 -24.69281 -22.50768 -21.84025 -20.29039 -19.23184 -18.68117 -17.01758 -16.92677 -16.36809 -16.00208 -15.80602 -14.69303 -14.44567 -14.30304 -14.18501 -14.13040 -13.89416 -13.57077 -13.44242 -13.20863 -12.74903 -12.62085 -12.48398 -12.22161 -12.15265 -11.91308 -11.80357 -11.71635 -11.24587 -11.23879 -11.00260 -10.85180 -10.73089 -10.53608 -10.49029 -10.37657 -10.35987 -10.24995 -9.84428 -9.59627 -9.14311 -8.96697 -8.47433 -8.40917 -8.17914 -7.79168 -5.96031 -3.93294 2.11132 2.14452 2.26839 3.25789 3.43549 3.48329 3.50690 4.44228 4.54846 4.60894 4.99774 5.04642 5.19346 5.22301 5.29314 5.34981 5.48415 5.53114 5.54117 5.57940 5.66425 5.70304 5.73873 5.80761 5.88389 5.97795 6.00901 6.07462 6.09216 6.11911 6.20774 6.27497 6.35002 6.36232 6.45350 6.54726 6.63393 6.70390 6.71161 6.84557 6.87726 7.03564 7.10536 7.16009 7.28401 7.59527 7.74238 7.84096 7.90342 8.55359 8.80962 9.03427 9.68449 11.16629 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.005143 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.780554 B = 5442.966940 C = 6658.068050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.145 6.145 3 N -0.489 5.489 4 C 0.131 3.869 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.137 4.137 8 C -0.134 4.134 9 C 0.528 3.472 10 O -0.477 6.477 11 C -0.109 4.109 12 C 0.055 3.945 13 H 0.048 0.952 14 C -0.486 4.486 15 H 0.072 0.928 16 C 0.087 3.913 17 N -0.897 5.897 18 Si 0.865 3.135 19 H -0.278 1.278 20 H -0.253 1.253 21 H -0.295 1.295 22 C -0.039 4.039 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.128 4.128 27 C -0.135 4.135 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.261 0.739 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 -7.953 -8.095 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.149 6.149 3 N -0.272 5.272 4 C 0.010 3.990 5 C -0.086 4.086 6 C -0.191 4.191 7 C -0.195 4.195 8 C -0.191 4.191 9 C 0.319 3.681 10 O -0.347 6.347 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.066 0.934 14 C -0.523 4.523 15 H 0.090 0.910 16 C -0.115 4.115 17 N -0.534 5.534 18 Si 0.693 3.307 19 H -0.203 1.203 20 H -0.178 1.178 21 H -0.222 1.222 22 C -0.040 4.040 23 C -0.118 4.118 24 C -0.146 4.146 25 C -0.168 4.168 26 C -0.146 4.146 27 C -0.153 4.153 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.880 -7.321 -8.033 14.688 hybrid contribution -0.748 0.725 0.401 1.117 sum -10.629 -6.596 -7.631 14.653 Atomic orbital electron populations 1.23306 0.82835 1.03177 1.01011 1.90598 1.19016 1.08547 1.96713 1.50423 1.60654 1.09657 1.06472 1.21691 0.95485 0.97465 0.84388 1.20979 0.95308 0.96090 0.96200 1.21793 1.00575 0.95020 1.01702 1.21802 1.01383 1.00172 0.96126 1.21908 0.97337 1.02771 0.97071 1.20966 0.76435 0.86545 0.84190 1.90785 1.42486 1.16587 1.84885 1.21632 1.00841 1.00225 0.92242 1.18165 0.98896 0.93333 0.86013 0.93434 1.20578 0.88515 1.00009 1.43234 0.91021 1.24853 0.94594 0.97730 0.94341 1.69884 1.12805 1.23035 1.47696 0.87046 0.82462 0.82482 0.78739 1.20347 1.17769 1.22192 1.20741 0.91528 0.93154 0.98543 1.20978 0.98905 0.95711 0.96181 1.21051 0.98210 1.00027 0.95307 1.20857 0.98725 0.97495 0.99676 1.20957 1.00318 0.96414 0.96928 1.21149 0.98789 0.99990 0.95401 0.93023 0.93504 0.88227 0.90889 0.89560 0.93576 0.93225 0.91784 0.92518 0.92426 0.93145 0.91834 0.93863 0.91300 0.89304 0.91757 0.92936 0.86206 0.87207 0.87476 0.87461 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 11.45 101.05 1.16 1.11 16 2 O -0.14 -2.01 10.13 -11.47 -0.12 -2.13 16 3 N -0.49 -7.77 2.30 -60.29 -0.14 -7.91 16 4 C 0.13 1.84 4.90 -4.04 -0.02 1.82 16 5 C -0.08 -1.20 0.85 -154.51 -0.13 -1.33 16 6 C -0.13 -1.76 8.28 37.16 0.31 -1.46 16 7 C -0.14 -1.62 8.47 37.15 0.31 -1.30 16 8 C -0.13 -2.44 6.96 37.16 0.26 -2.18 16 9 C 0.53 10.31 5.65 -10.99 -0.06 10.25 16 10 O -0.48 -11.05 12.35 5.56 0.07 -10.98 16 11 C -0.11 -2.09 4.27 -27.88 -0.12 -2.21 16 12 C 0.06 1.25 1.17 -92.93 -0.11 1.14 16 13 H 0.05 1.14 5.02 -51.93 -0.26 0.88 16 14 C -0.49 -13.06 6.95 -34.44 -0.24 -13.30 16 15 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 16 C 0.09 2.51 5.47 -17.82 -0.10 2.42 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 18 Si 0.86 22.20 26.95 -169.99 -4.58 17.62 16 19 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.25 -5.99 4.43 56.52 0.25 -5.74 16 21 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 22 C -0.04 -0.82 4.58 -104.63 -0.48 -1.29 16 23 C -0.10 -1.95 8.90 -39.58 -0.35 -2.31 16 24 C -0.13 -2.20 10.05 -39.59 -0.40 -2.59 16 25 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 26 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 27 C -0.14 -2.64 8.58 -39.58 -0.34 -2.98 16 28 H 0.05 0.56 7.45 -51.93 -0.39 0.17 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.30 7.53 -51.93 -0.39 0.91 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.95 7.11 -51.93 -0.37 0.58 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 1.34 6.36 -51.93 -0.33 1.01 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.42 7.04 -51.93 -0.37 1.05 16 42 H 0.09 1.69 7.95 -51.93 -0.41 1.28 16 43 H 0.06 1.07 7.44 -51.93 -0.39 0.69 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.12 2.35 7.84 -52.48 -0.41 1.94 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 48 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 49 H 0.11 2.12 6.97 -52.49 -0.37 1.76 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -31.61 385.45 -7.75 -39.36 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.46 Total: 4.69 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -1.10 Total: -19.66 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.64 Total: -34.71 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.05 Total: -13.11 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.58 Total: 17.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.61 -7.75 -39.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804583465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.030 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds