Wall clock time and date at job start Tue Mar 31 2020 12:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47141 * 2 1 4 4 C 1.53003 * 109.47359 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47316 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.46735 * 304.99664 * 5 4 3 7 7 C 1.53001 * 109.47132 * 184.99988 * 5 4 3 8 8 N 1.46493 * 109.47267 * 64.99758 * 5 4 3 9 9 C 1.46497 * 120.00209 * 60.00480 * 8 5 4 10 10 C 1.34778 * 120.00156 * 239.99889 * 8 5 4 11 11 O 1.21282 * 119.99885 * 0.02562 * 10 8 5 12 12 C 1.50705 * 120.00154 * 180.02562 * 10 8 5 13 13 C 1.50698 * 109.47120 * 180.02562 * 12 10 8 14 14 C 1.38318 * 119.96497 * 269.72325 * 13 12 10 15 15 C 1.38289 * 120.13668 * 179.76819 * 14 13 12 16 16 C 1.38121 * 120.06635 * 0.50721 * 15 14 13 17 17 C 1.38848 * 119.93347 * 359.74964 * 16 15 14 18 18 O 1.35757 * 120.07053 * 179.97438 * 17 16 15 19 19 C 1.34826 * 116.99900 * 354.48468 * 18 17 16 20 20 H 1.08007 * 119.99883 * 5.05637 * 19 18 17 21 21 C 1.38655 * 119.99933 * 185.05845 * 19 18 17 22 22 N 1.31553 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47608 * 59.99847 * 23 21 19 25 25 H 1.48502 * 109.46804 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47176 * 299.99619 * 23 21 19 27 27 C 1.38080 * 119.96529 * 89.99798 * 13 12 10 28 28 H 1.08997 * 109.47191 * 300.00177 * 1 2 3 29 29 H 1.09006 * 109.47374 * 60.00215 * 1 2 3 30 30 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46810 * 240.00443 * 2 1 3 32 32 H 1.08999 * 109.47537 * 120.00145 * 2 1 3 33 33 H 1.09006 * 109.47137 * 60.00059 * 3 2 1 34 34 H 1.08999 * 109.47471 * 300.00168 * 3 2 1 35 35 H 1.08993 * 109.46855 * 60.00178 * 4 3 2 36 36 H 1.08999 * 109.46948 * 300.00465 * 4 3 2 37 37 H 1.08992 * 109.47072 * 299.99546 * 7 5 4 38 38 H 1.09005 * 109.46656 * 60.00028 * 7 5 4 39 39 H 1.09006 * 109.46859 * 179.97438 * 7 5 4 40 40 H 1.09006 * 109.46891 * 269.99889 * 9 8 5 41 41 H 1.09006 * 109.47120 * 29.99453 * 9 8 5 42 42 H 1.09002 * 109.47922 * 149.99683 * 9 8 5 43 43 H 1.08996 * 109.47230 * 59.99909 * 12 10 8 44 44 H 1.09002 * 109.46596 * 300.00023 * 12 10 8 45 45 H 1.07999 * 119.93165 * 0.02562 * 14 13 12 46 46 H 1.08004 * 119.96320 * 180.25570 * 15 14 13 47 47 H 1.08000 * 120.03207 * 179.76859 * 16 15 14 48 48 H 0.96993 * 120.00169 * 180.02562 * 22 21 19 49 49 H 1.07997 * 120.03524 * 359.95606 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 -0.8414 7 6 5.6048 2.8869 -0.1264 8 7 3.6929 3.5393 1.2523 9 6 4.1549 3.0001 2.5337 10 6 2.9118 4.6373 1.2255 11 8 2.5290 5.0835 0.1647 12 6 2.5141 5.3107 2.5138 13 6 1.6468 6.5049 2.2094 14 6 2.2243 7.7465 2.0145 15 6 1.4321 8.8438 1.7303 16 6 0.0602 8.7048 1.6506 17 6 -0.5230 7.4608 1.8510 18 8 -1.8711 7.3212 1.7739 19 6 -2.5949 8.4473 1.6132 20 1 -2.0957 9.3943 1.4699 21 6 -3.9801 8.3896 1.6320 22 7 -4.5882 7.2362 1.8062 23 14 -4.9829 9.9498 1.4087 24 1 -4.6670 10.5570 0.0909 25 1 -6.4298 9.6210 1.4688 26 1 -4.6491 10.9118 2.4898 27 6 0.2759 6.3595 2.1311 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 6.0397 2.3475 0.7149 38 1 5.8926 2.4001 -1.0582 39 1 5.9680 3.9147 -0.1264 40 1 3.4325 2.2722 2.9032 41 1 5.1215 2.5153 2.3966 42 1 4.2545 3.8115 3.2547 43 1 3.4086 5.6367 3.0446 44 1 1.9590 4.6077 3.1348 45 1 3.2964 7.8584 2.0802 46 1 1.8864 9.8112 1.5745 47 1 -0.5582 9.5629 1.4323 48 1 -5.5572 7.1958 1.8190 49 1 -0.1748 5.3905 2.2871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811958927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:03 Heat of formation + Delta-G solvation = -59.002141 kcal Electronic energy + Delta-G solvation = -26933.410568 eV Core-core repulsion = 23246.620844 eV Total energy + Delta-G solvation = -3686.789723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17313 -38.85366 -37.16587 -36.24356 -34.95339 -32.80000 -32.21262 -31.42927 -29.15474 -29.02420 -27.12155 -26.88972 -25.19119 -24.26578 -21.99211 -21.47705 -21.10603 -20.42811 -18.97724 -17.55701 -17.22030 -16.85761 -16.06104 -15.84663 -15.25442 -14.97561 -14.47749 -14.36635 -14.26967 -13.82346 -13.78410 -13.52324 -13.39993 -13.17997 -12.90454 -12.67663 -12.58326 -12.52409 -12.39006 -12.25013 -12.15502 -11.76716 -11.47134 -11.44881 -11.20457 -11.19924 -10.91564 -10.75426 -10.71145 -10.66993 -10.63733 -10.55278 -10.40602 -9.57723 -9.26889 -8.76775 -8.66095 -7.98082 -7.14025 -6.37546 -3.96521 2.17059 2.47130 2.82579 3.03640 3.17625 3.19229 3.21257 4.02582 4.39327 4.59210 4.80128 4.82270 4.85795 4.94045 5.05041 5.06433 5.15206 5.16675 5.18936 5.25461 5.28078 5.36068 5.42933 5.50711 5.53400 5.56840 5.66098 5.72480 5.74937 5.78243 5.82489 5.88205 5.94668 5.99268 6.00935 6.13355 6.19501 6.25185 6.32002 6.41468 6.56233 6.73899 6.99659 7.14305 7.34850 7.39320 7.44614 7.51729 7.90874 8.07620 8.36256 9.08167 9.79785 10.80782 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.003102 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.207248 B = 9023.434866 C =10591.809117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.119 4.119 4 C -0.126 4.126 5 C 0.133 3.867 6 H 0.101 0.899 7 C -0.160 4.160 8 N -0.617 5.617 9 C 0.076 3.924 10 C 0.516 3.484 11 O -0.518 6.518 12 C -0.092 4.092 13 C -0.032 4.032 14 C -0.197 4.197 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.174 4.174 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.126 0.874 48 H 0.269 0.731 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.673 -11.901 0.800 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.157 4.157 4 C -0.164 4.164 5 C 0.030 3.970 6 H 0.119 0.881 7 C -0.218 4.218 8 N -0.353 5.353 9 C -0.067 4.067 10 C 0.304 3.696 11 O -0.392 6.392 12 C -0.132 4.132 13 C -0.033 4.033 14 C -0.216 4.216 15 C -0.093 4.093 16 C -0.251 4.251 17 C 0.102 3.898 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.193 4.193 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.143 0.857 48 H 0.079 0.921 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.053 -11.937 0.242 21.644 hybrid contribution -0.428 0.754 -0.044 0.869 sum 17.624 -11.183 0.198 20.874 Atomic orbital electron populations 1.21784 0.95730 1.01335 1.02393 1.21505 0.96085 0.96834 1.01396 1.21583 0.94699 0.96535 1.02871 1.21946 0.96396 0.95851 1.02193 1.21085 0.94566 0.93391 0.88006 0.88097 1.22131 0.95350 1.02349 1.01989 1.47922 1.51775 1.28830 1.06784 1.21753 0.99921 0.99746 0.85274 1.20751 0.77484 0.79621 0.91715 1.90740 1.53007 1.63240 1.32248 1.20626 1.00409 0.96732 0.95431 1.18682 0.92294 0.92864 0.99436 1.20337 0.98066 0.92782 1.10378 1.20673 0.93307 0.97471 0.97853 1.21162 0.95060 0.98153 1.10687 1.19271 0.85241 0.92930 0.92370 1.83977 1.11729 1.34007 1.78669 1.21268 0.88291 0.85931 1.51237 0.89209 1.25261 0.95845 0.98674 0.96724 1.70029 1.09749 1.24284 1.45976 0.85803 0.78499 0.80071 0.79167 1.19538 1.20330 1.19551 1.19931 0.91972 0.97563 1.09871 0.92519 0.92585 0.92999 0.92382 0.92420 0.91856 0.91783 0.91129 0.91823 0.92425 0.91579 0.92253 0.92664 0.91172 0.90883 0.88554 0.88441 0.88039 0.87527 0.85659 0.92087 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.91 37.15 0.37 -1.23 16 2 C -0.12 -1.13 5.93 -26.74 -0.16 -1.29 16 3 C -0.12 -1.29 5.10 -26.73 -0.14 -1.43 16 4 C -0.13 -1.10 4.64 -26.73 -0.12 -1.22 16 5 C 0.13 1.37 2.64 -67.93 -0.18 1.19 16 6 H 0.10 1.34 6.90 -51.93 -0.36 0.98 16 7 C -0.16 -1.27 9.17 37.16 0.34 -0.93 16 8 N -0.62 -6.81 2.21 -173.93 -0.39 -7.19 16 9 C 0.08 0.56 9.20 59.85 0.55 1.11 16 10 C 0.52 7.77 7.67 -10.98 -0.08 7.68 16 11 O -0.52 -10.30 15.36 5.56 0.09 -10.21 16 12 C -0.09 -1.29 4.38 -29.03 -0.13 -1.41 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.06 16 14 C -0.20 -3.66 9.70 -39.53 -0.38 -4.05 16 15 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 16 C -0.23 -5.35 9.17 -39.40 -0.36 -5.71 16 17 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 18 O -0.18 -5.36 9.76 0.04 0.00 -5.36 16 19 C -0.39 -11.32 9.49 30.89 0.29 -11.02 16 20 H 0.09 2.41 5.20 -52.48 -0.27 2.13 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.87 -26.00 13.67 55.48 0.76 -25.24 16 23 Si 0.94 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.17 -3.92 9.65 -39.39 -0.38 -4.30 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 37 H 0.06 0.38 6.66 -51.93 -0.35 0.03 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 42 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 43 H 0.10 1.05 7.34 -51.93 -0.38 0.67 16 44 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 45 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 46 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 47 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -34.41 396.92 -8.34 -42.75 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.16 Total: 4.06 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.59 Total: -20.84 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.37 Total: -32.44 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.41 -8.34 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811958927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.254 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds