Wall clock time and date at job start Tue Mar 31 2020 12:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47141 * 2 1 4 4 C 1.53003 * 109.47359 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47316 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.46735 * 304.99664 * 5 4 3 7 7 C 1.53001 * 109.47132 * 184.99988 * 5 4 3 8 8 N 1.46493 * 109.47267 * 64.99758 * 5 4 3 9 9 C 1.46497 * 120.00209 * 60.00480 * 8 5 4 10 10 C 1.34778 * 120.00156 * 239.99889 * 8 5 4 11 11 O 1.21282 * 119.99885 * 0.02562 * 10 8 5 12 12 C 1.50705 * 120.00154 * 180.02562 * 10 8 5 13 13 C 1.50698 * 109.47120 * 180.02562 * 12 10 8 14 14 C 1.38318 * 119.96497 * 269.72325 * 13 12 10 15 15 C 1.38289 * 120.13668 * 179.76819 * 14 13 12 16 16 C 1.38121 * 120.06635 * 0.50721 * 15 14 13 17 17 C 1.38848 * 119.93347 * 359.74964 * 16 15 14 18 18 O 1.35757 * 120.07053 * 179.97438 * 17 16 15 19 19 C 1.34826 * 116.99900 * 354.48468 * 18 17 16 20 20 H 1.08007 * 119.99883 * 5.05637 * 19 18 17 21 21 C 1.38655 * 119.99933 * 185.05845 * 19 18 17 22 22 N 1.31553 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47608 * 59.99847 * 23 21 19 25 25 H 1.48502 * 109.46804 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47176 * 299.99619 * 23 21 19 27 27 C 1.38080 * 119.96529 * 89.99798 * 13 12 10 28 28 H 1.08997 * 109.47191 * 300.00177 * 1 2 3 29 29 H 1.09006 * 109.47374 * 60.00215 * 1 2 3 30 30 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46810 * 240.00443 * 2 1 3 32 32 H 1.08999 * 109.47537 * 120.00145 * 2 1 3 33 33 H 1.09006 * 109.47137 * 60.00059 * 3 2 1 34 34 H 1.08999 * 109.47471 * 300.00168 * 3 2 1 35 35 H 1.08993 * 109.46855 * 60.00178 * 4 3 2 36 36 H 1.08999 * 109.46948 * 300.00465 * 4 3 2 37 37 H 1.08992 * 109.47072 * 299.99546 * 7 5 4 38 38 H 1.09005 * 109.46656 * 60.00028 * 7 5 4 39 39 H 1.09006 * 109.46859 * 179.97438 * 7 5 4 40 40 H 1.09006 * 109.46891 * 269.99889 * 9 8 5 41 41 H 1.09006 * 109.47120 * 29.99453 * 9 8 5 42 42 H 1.09002 * 109.47922 * 149.99683 * 9 8 5 43 43 H 1.08996 * 109.47230 * 59.99909 * 12 10 8 44 44 H 1.09002 * 109.46596 * 300.00023 * 12 10 8 45 45 H 1.07999 * 119.93165 * 0.02562 * 14 13 12 46 46 H 1.08004 * 119.96320 * 180.25570 * 15 14 13 47 47 H 1.08000 * 120.03207 * 179.76859 * 16 15 14 48 48 H 0.96993 * 120.00169 * 180.02562 * 22 21 19 49 49 H 1.07997 * 120.03524 * 359.95606 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 -0.8414 7 6 5.6048 2.8869 -0.1264 8 7 3.6929 3.5393 1.2523 9 6 4.1549 3.0001 2.5337 10 6 2.9118 4.6373 1.2255 11 8 2.5290 5.0835 0.1647 12 6 2.5141 5.3107 2.5138 13 6 1.6468 6.5049 2.2094 14 6 2.2243 7.7465 2.0145 15 6 1.4321 8.8438 1.7303 16 6 0.0602 8.7048 1.6506 17 6 -0.5230 7.4608 1.8510 18 8 -1.8711 7.3212 1.7739 19 6 -2.5949 8.4473 1.6132 20 1 -2.0957 9.3943 1.4699 21 6 -3.9801 8.3896 1.6320 22 7 -4.5882 7.2362 1.8062 23 14 -4.9829 9.9498 1.4087 24 1 -4.6670 10.5570 0.0909 25 1 -6.4298 9.6210 1.4688 26 1 -4.6491 10.9118 2.4898 27 6 0.2759 6.3595 2.1311 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 6.0397 2.3475 0.7149 38 1 5.8926 2.4001 -1.0582 39 1 5.9680 3.9147 -0.1264 40 1 3.4325 2.2722 2.9032 41 1 5.1215 2.5153 2.3966 42 1 4.2545 3.8115 3.2547 43 1 3.4086 5.6367 3.0446 44 1 1.9590 4.6077 3.1348 45 1 3.2964 7.8584 2.0802 46 1 1.8864 9.8112 1.5745 47 1 -0.5582 9.5629 1.4323 48 1 -5.5572 7.1958 1.8190 49 1 -0.1748 5.3905 2.2871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811958927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:02 Heat of formation + Delta-G solvation = -78.972757 kcal Electronic energy + Delta-G solvation = -26934.276559 eV Core-core repulsion = 23246.620844 eV Total energy + Delta-G solvation = -3687.655714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.33615 -40.56493 -38.50657 -37.71952 -35.85099 -34.36760 -33.85204 -32.64412 -30.87094 -29.84837 -28.45343 -27.70849 -27.24026 -25.09341 -23.41628 -23.07076 -22.00451 -21.73913 -20.00070 -19.41012 -18.73889 -18.25342 -17.03214 -16.95672 -16.67167 -16.37379 -16.10702 -15.95818 -15.50889 -15.15825 -15.04633 -14.74171 -14.56411 -14.29631 -14.13981 -14.01586 -13.75138 -13.59626 -13.33190 -13.29482 -13.07050 -12.99056 -12.86383 -12.77898 -12.46199 -12.36922 -12.23478 -12.22836 -12.12807 -12.02258 -11.68653 -11.49053 -11.46465 -11.21573 -10.84693 -10.75661 -9.63921 -9.56525 -8.98712 -8.47487 -6.16468 0.51446 0.74951 1.32961 1.44577 1.49905 1.69337 2.09788 2.17480 2.83157 3.15904 3.42923 3.60934 3.79030 3.98833 3.99728 4.05256 4.09046 4.27093 4.28491 4.32888 4.36093 4.39527 4.43755 4.54989 4.56812 4.59703 4.71908 4.73606 4.77747 4.79243 4.89277 4.90708 4.97768 5.04215 5.07592 5.09377 5.11843 5.17317 5.24289 5.29640 5.33701 5.37302 5.46807 5.63975 5.71781 5.72869 5.74930 6.01952 6.21955 6.45293 6.96633 7.27625 7.78297 8.75955 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.003102 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.207248 B = 9023.434866 C =10591.809117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C -0.118 4.118 4 C -0.115 4.115 5 C 0.127 3.873 6 H 0.061 0.939 7 C -0.151 4.151 8 N -0.606 5.606 9 C 0.065 3.935 10 C 0.511 3.489 11 O -0.582 6.582 12 C -0.089 4.089 13 C -0.025 4.025 14 C -0.181 4.181 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.417 4.417 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.255 1.255 27 C -0.194 4.194 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.032 0.968 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.119 0.881 48 H 0.273 0.727 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.650 -12.230 1.950 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.152 4.152 3 C -0.156 4.156 4 C -0.153 4.153 5 C 0.024 3.976 6 H 0.080 0.920 7 C -0.209 4.209 8 N -0.339 5.339 9 C -0.077 4.077 10 C 0.300 3.700 11 O -0.462 6.462 12 C -0.129 4.129 13 C -0.025 4.025 14 C -0.199 4.199 15 C -0.091 4.091 16 C -0.267 4.267 17 C 0.063 3.937 18 O -0.142 6.142 19 C -0.493 4.493 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.183 1.183 25 H -0.194 1.194 26 H -0.179 1.179 27 C -0.213 4.213 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.160 0.840 44 H 0.133 0.867 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.136 0.864 48 H 0.082 0.918 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 22.123 -12.306 1.426 25.355 hybrid contribution -1.332 0.729 -0.377 1.564 sum 20.791 -11.577 1.049 23.820 Atomic orbital electron populations 1.21824 0.96954 1.01908 1.00952 1.21477 0.94983 0.95834 1.02870 1.21548 0.96691 0.97098 1.00293 1.21897 0.94285 0.95042 1.04122 1.21174 0.96328 0.93614 0.86517 0.92046 1.22059 0.92853 1.02200 1.03751 1.47973 1.49997 1.27304 1.08668 1.22115 1.01342 1.00729 0.83494 1.20914 0.77550 0.80499 0.91007 1.90727 1.55739 1.65463 1.34227 1.20731 1.01415 0.95126 0.95586 1.19212 0.91196 0.95343 0.96765 1.20956 1.00219 0.91874 1.06883 1.21139 0.91782 0.99870 0.96268 1.21290 0.96873 0.96975 1.11515 1.19861 0.84413 0.95122 0.94311 1.83936 1.13835 1.34928 1.81496 1.21804 0.89173 0.86435 1.51853 0.88245 1.26626 0.96701 1.02803 0.95948 1.70185 1.10189 1.27199 1.48474 0.84640 0.76511 0.75152 0.79823 1.18333 1.19410 1.17905 1.20183 0.93778 0.96492 1.10852 0.93959 0.94111 0.91374 0.91010 0.90617 0.94064 0.94891 0.89496 0.89380 0.89970 0.90357 0.93408 0.91834 0.88524 0.89179 0.84045 0.86684 0.83581 0.83600 0.86371 0.91833 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.11 -2.01 5.93 30.59 0.18 -1.83 16 3 C -0.12 -2.59 5.10 30.59 0.16 -2.43 16 4 C -0.12 -1.77 4.64 30.59 0.14 -1.62 16 5 C 0.13 2.44 2.64 44.99 0.12 2.56 16 6 H 0.06 1.70 6.90 -2.38 -0.02 1.68 16 7 C -0.15 -1.93 9.17 71.98 0.66 -1.27 16 8 N -0.61 -12.07 2.21 -822.58 -1.82 -13.89 16 9 C 0.06 0.67 9.20 127.77 1.18 1.84 16 10 C 0.51 14.86 7.67 87.66 0.67 15.54 16 11 O -0.58 -23.79 15.36 -3.03 -0.05 -23.83 16 12 C -0.09 -2.26 4.38 29.10 0.13 -2.13 16 13 C -0.02 -0.90 4.37 -19.88 -0.09 -0.99 16 14 C -0.18 -6.21 9.70 22.30 0.22 -6.00 16 15 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 16 C -0.25 -11.76 9.17 22.39 0.21 -11.56 16 17 C 0.11 6.14 6.65 22.58 0.15 6.29 16 18 O -0.23 -15.14 9.76 -22.78 -0.22 -15.36 16 19 C -0.42 -25.66 9.49 67.92 0.64 -25.01 16 20 H 0.10 5.63 5.20 -2.91 -0.02 5.62 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 22 N -0.92 -58.84 13.67 21.61 0.30 -58.55 16 23 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 27 C -0.19 -9.15 9.65 22.39 0.22 -8.93 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.04 1.06 7.75 -2.38 -0.02 1.04 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 0.97 7.51 -2.39 -0.02 0.95 16 37 H 0.08 0.66 6.66 -2.39 -0.02 0.65 16 38 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.10 0.54 6.43 -2.38 -0.02 0.53 16 42 H 0.09 0.67 6.44 -2.39 -0.02 0.65 16 43 H 0.14 2.32 7.34 -2.39 -0.02 2.30 16 44 H 0.12 2.54 8.05 -2.39 -0.02 2.52 16 45 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 46 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 47 H 0.12 5.65 5.64 -2.91 -0.02 5.63 16 48 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 49 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -85.09 396.92 7.13 -77.96 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.92 Total: 28.65 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 5.98 Total: -41.65 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.53 Total: -72.44 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.27 Total: -39.20 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -85.09 7.13 -77.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811958927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.013 kcal (2) G-P(sol) polarization free energy of solvation -85.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds