Wall clock time and date at job start Tue Mar 31 2020 12:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47045 * 2 1 4 4 C 1.53001 * 109.47045 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47049 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47027 * 55.00371 * 5 4 3 7 7 C 1.52998 * 109.47134 * 175.00073 * 5 4 3 8 8 N 1.46500 * 109.47371 * 295.00252 * 5 4 3 9 9 C 1.46503 * 120.00030 * 299.99986 * 8 5 4 10 10 C 1.34777 * 119.99979 * 119.99622 * 8 5 4 11 11 O 1.21277 * 119.99679 * 0.02562 * 10 8 5 12 12 C 1.50702 * 120.00004 * 179.97438 * 10 8 5 13 13 C 1.50694 * 109.47044 * 180.02562 * 12 10 8 14 14 C 1.38328 * 119.96436 * 269.72554 * 13 12 10 15 15 C 1.38282 * 120.13625 * 179.76771 * 14 13 12 16 16 C 1.38118 * 120.06923 * 0.51115 * 15 14 13 17 17 C 1.38854 * 119.93037 * 359.74661 * 16 15 14 18 18 O 1.35756 * 120.06846 * 179.97438 * 17 16 15 19 19 C 1.34825 * 116.99807 * 354.48554 * 18 17 16 20 20 H 1.07997 * 120.00458 * 5.05596 * 19 18 17 21 21 C 1.38661 * 119.99988 * 185.06085 * 19 18 17 22 22 N 1.31547 * 119.99999 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99774 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47047 * 89.99981 * 23 21 19 25 25 H 1.48495 * 109.46858 * 210.00091 * 23 21 19 26 26 H 1.48498 * 109.47067 * 330.00063 * 23 21 19 27 27 C 1.38080 * 119.96747 * 90.00508 * 13 12 10 28 28 H 1.08997 * 109.47330 * 59.99842 * 1 2 3 29 29 H 1.09002 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46904 * 299.99828 * 1 2 3 31 31 H 1.08998 * 109.46904 * 240.00172 * 2 1 3 32 32 H 1.08997 * 109.47330 * 120.00158 * 2 1 3 33 33 H 1.08997 * 109.47185 * 300.00246 * 3 2 1 34 34 H 1.08995 * 109.46632 * 60.00317 * 3 2 1 35 35 H 1.09000 * 109.47085 * 300.00612 * 4 3 2 36 36 H 1.08998 * 109.46904 * 60.00172 * 4 3 2 37 37 H 1.09006 * 109.47280 * 300.00325 * 7 5 4 38 38 H 1.09007 * 109.46921 * 60.00233 * 7 5 4 39 39 H 1.09002 * 109.47215 * 180.02562 * 7 5 4 40 40 H 1.09000 * 109.47038 * 89.99504 * 9 8 5 41 41 H 1.08991 * 109.46884 * 209.99925 * 9 8 5 42 42 H 1.08999 * 109.46931 * 330.00087 * 9 8 5 43 43 H 1.09001 * 109.47000 * 300.00755 * 12 10 8 44 44 H 1.09005 * 109.46891 * 60.00469 * 12 10 8 45 45 H 1.08001 * 119.92752 * 359.97438 * 14 13 12 46 46 H 1.08001 * 119.96172 * 180.25496 * 15 14 13 47 47 H 1.08004 * 120.03082 * 179.72187 * 16 15 14 48 48 H 0.97004 * 120.00088 * 180.02562 * 22 21 19 49 49 H 1.08003 * 120.03225 * 359.95109 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8432 7 6 5.6047 2.8869 0.1276 8 7 3.6929 3.5405 -1.2504 9 6 4.1549 3.0024 -2.5324 10 6 2.9118 4.6384 -1.2227 11 8 2.5297 5.0841 -0.1614 12 6 2.5141 5.3130 -2.5103 13 6 1.6477 6.5075 -2.2048 14 6 0.2738 6.3639 -2.1315 15 6 -0.5243 7.4566 -1.8467 16 6 0.0477 8.6975 -1.6448 17 6 1.4261 8.8460 -1.7229 18 8 1.9913 10.0644 -1.5254 19 6 1.1539 11.1097 -1.3709 20 1 0.0875 10.9452 -1.3253 21 6 1.6618 12.3960 -1.2707 22 7 0.8447 13.4160 -1.1204 23 14 3.5064 12.6805 -1.3490 24 1 3.9145 12.8961 -2.7605 25 1 3.8571 13.8779 -0.5439 26 1 4.2138 11.4936 -0.8050 27 6 2.2255 7.7454 -2.0039 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9330 0.9288 0.8908 36 1 3.9337 0.9286 -0.8891 37 1 5.8928 2.3992 1.0590 38 1 6.0397 2.3481 -0.7142 39 1 5.9680 3.9146 0.1286 40 1 3.4326 2.2748 -2.9025 41 1 4.2543 3.8144 -3.2525 42 1 5.1214 2.5175 -2.3957 43 1 3.4086 5.6394 -3.0408 44 1 1.9589 4.6105 -3.1320 45 1 -0.1761 5.3956 -2.2939 46 1 -1.5963 7.3405 -1.7861 47 1 -0.5765 9.5514 -1.4268 48 1 1.2001 14.3159 -1.0507 49 1 3.2980 7.8576 -2.0649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811958928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:06 Heat of formation + Delta-G solvation = -57.350676 kcal Electronic energy + Delta-G solvation = -26847.233949 eV Core-core repulsion = 23160.515838 eV Total energy + Delta-G solvation = -3686.718111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25325 -39.02296 -37.28983 -36.40437 -35.07347 -32.87745 -32.32773 -31.53823 -29.39260 -29.15262 -27.20087 -26.96400 -25.12564 -24.38425 -22.11153 -21.55137 -21.23155 -20.37152 -19.01697 -17.66303 -17.31751 -17.00738 -16.15748 -15.90519 -15.39731 -15.11925 -14.76374 -14.38282 -14.15112 -13.85691 -13.82142 -13.63979 -13.38617 -13.31706 -13.10194 -12.72417 -12.64652 -12.59621 -12.42884 -12.35351 -12.23103 -12.09570 -11.64000 -11.58081 -11.34518 -11.25551 -10.99654 -10.80614 -10.79075 -10.77507 -10.73810 -10.65986 -10.11280 -9.65147 -9.33383 -8.82019 -8.73019 -8.08072 -7.29624 -6.35914 -4.02355 2.07049 2.34925 2.75000 2.96839 3.25814 3.28639 3.44884 4.28736 4.30568 4.49533 4.67449 4.72969 4.77003 4.80466 4.87853 4.97358 5.01834 5.06909 5.10914 5.15095 5.20212 5.27763 5.36968 5.38980 5.42702 5.45236 5.54831 5.57596 5.61978 5.67245 5.72762 5.74497 5.87220 5.89249 5.90227 5.98161 6.05775 6.16666 6.17837 6.31217 6.49021 6.59465 6.84976 7.16134 7.27439 7.32268 7.38196 7.66863 7.86860 8.10247 8.28757 8.99819 9.63416 10.72038 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.002809 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.900316 B = 9964.747341 C =10874.238062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.126 4.126 5 C 0.133 3.867 6 H 0.101 0.899 7 C -0.161 4.161 8 N -0.617 5.617 9 C 0.076 3.924 10 C 0.516 3.484 11 O -0.518 6.518 12 C -0.092 4.092 13 C -0.034 4.034 14 C -0.187 4.187 15 C -0.076 4.076 16 C -0.218 4.218 17 C 0.161 3.839 18 O -0.220 6.220 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.882 5.882 23 Si 0.904 3.096 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.175 4.175 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.132 0.868 48 H 0.278 0.722 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -27.015 -2.473 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.164 4.164 5 C 0.030 3.970 6 H 0.119 0.881 7 C -0.219 4.219 8 N -0.353 5.353 9 C -0.067 4.067 10 C 0.304 3.696 11 O -0.392 6.392 12 C -0.132 4.132 13 C -0.035 4.035 14 C -0.206 4.206 15 C -0.094 4.094 16 C -0.237 4.237 17 C 0.109 3.891 18 O -0.125 6.125 19 C -0.463 4.463 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.194 4.194 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.150 0.850 48 H 0.089 0.911 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.366 -26.437 -1.846 27.255 hybrid contribution 0.624 0.248 -0.086 0.677 sum 6.990 -26.189 -1.932 27.174 Atomic orbital electron populations 1.21776 0.95904 1.01341 1.02087 1.21520 0.95936 0.96946 1.01567 1.21571 0.94899 0.96402 1.02676 1.21947 0.96240 0.95952 1.02278 1.21088 0.94720 0.93238 0.87987 0.88074 1.22139 0.95250 1.02554 1.02006 1.47928 1.51698 1.28832 1.06824 1.21755 0.99952 0.99743 0.85264 1.20743 0.77622 0.79562 0.91693 1.90742 1.53281 1.63054 1.32166 1.20627 1.00677 0.96457 0.95455 1.18683 0.93199 0.92032 0.99603 1.20405 0.92783 0.97982 1.09470 1.20729 0.98611 0.92427 0.97644 1.21287 0.94946 0.98435 1.09026 1.19004 0.91364 0.85924 0.92809 1.83569 1.36296 1.13133 1.79522 1.20765 0.91198 0.83377 1.50993 0.87667 1.24449 0.99983 0.93746 0.95842 1.69645 1.35273 0.99222 1.47906 0.86193 0.83932 0.78245 0.78616 1.19935 1.20829 1.18374 1.19930 0.98740 0.90980 1.09735 0.92721 0.92967 0.92668 0.92352 0.92271 0.91969 0.91841 0.91076 0.91784 0.91541 0.92407 0.92099 0.92742 0.90822 0.91106 0.88404 0.88471 0.87825 0.87216 0.85015 0.91143 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -1.06 5.10 -26.73 -0.14 -1.19 16 4 C -0.13 -0.96 4.64 -26.73 -0.12 -1.09 16 5 C 0.13 1.29 2.64 -67.93 -0.18 1.11 16 6 H 0.10 1.28 6.90 -51.93 -0.36 0.92 16 7 C -0.16 -1.28 9.17 37.16 0.34 -0.94 16 8 N -0.62 -6.37 2.22 -173.94 -0.39 -6.75 16 9 C 0.08 0.51 9.21 59.85 0.55 1.06 16 10 C 0.52 7.32 7.67 -10.98 -0.08 7.24 16 11 O -0.52 -9.86 15.36 5.56 0.09 -9.77 16 12 C -0.09 -1.20 4.38 -29.04 -0.13 -1.33 16 13 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 14 C -0.19 -3.34 9.70 -39.53 -0.38 -3.73 16 15 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 16 C -0.22 -4.96 9.17 -39.40 -0.36 -5.32 16 17 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 18 O -0.22 -6.04 8.59 0.04 0.00 -6.04 16 19 C -0.39 -11.27 9.95 30.89 0.31 -10.96 16 20 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 21 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 22 N -0.88 -26.05 13.96 55.48 0.77 -25.28 16 23 Si 0.90 22.25 28.62 -169.99 -4.86 17.39 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.26 -6.46 7.11 56.52 0.40 -6.06 16 27 C -0.17 -3.67 9.65 -39.40 -0.38 -4.05 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.64 7.75 -51.93 -0.40 0.23 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.37 6.66 -51.93 -0.35 0.03 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 42 H 0.07 0.37 6.43 -51.93 -0.33 0.04 16 43 H 0.10 1.07 7.34 -51.93 -0.38 0.69 16 44 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 45 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 46 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 47 H 0.13 3.12 5.64 -52.48 -0.30 2.82 16 48 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.11 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -33.32 395.80 -8.18 -41.50 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.18 Total: 1.64 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -1.58 Total: -18.66 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.39 Total: -32.03 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.81 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.86 Total: 17.39 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.32 -8.18 -41.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811958928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.850 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds