Wall clock time and date at job start Tue Mar 31 2020 12:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46775 * 2 1 4 4 C 1.53004 * 109.46855 * 239.99917 * 2 1 3 5 5 C 1.53000 * 109.47125 * 120.00350 * 2 1 3 6 6 C 1.53004 * 109.46900 * 299.99539 * 5 2 1 7 7 C 1.52995 * 109.46888 * 180.02562 * 5 2 1 8 8 C 1.52997 * 109.47229 * 59.99740 * 5 2 1 9 9 N 1.46499 * 109.47058 * 179.97438 * 8 5 2 10 10 C 1.34776 * 120.00532 * 180.02562 * 9 8 5 11 11 O 1.21596 * 119.99483 * 0.02562 * 10 9 8 12 12 C 1.47529 * 120.00576 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.19410 * 0.02562 * 12 10 9 14 14 C 1.37835 * 119.91853 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.31903 * 0.02562 * 14 13 12 16 16 C 1.38022 * 120.40696 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.06839 * 359.95623 * 16 15 14 18 18 O 1.35527 * 120.16025 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99627 * 354.39561 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.06815 * 19 18 17 21 21 C 1.38705 * 119.99676 * 185.06799 * 19 18 17 22 22 N 1.31514 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47413 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47271 * 120.00166 * 23 21 19 26 26 H 1.48507 * 109.46838 * 239.99679 * 23 21 19 27 27 H 1.09004 * 109.46879 * 299.99963 * 1 2 3 28 28 H 1.08994 * 109.47288 * 59.99759 * 1 2 3 29 29 H 1.09003 * 109.46728 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46428 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47410 * 300.00167 * 3 2 1 32 32 H 1.08991 * 109.47111 * 60.00470 * 3 2 1 33 33 H 1.08990 * 109.47048 * 300.00080 * 4 2 1 34 34 H 1.09004 * 109.46904 * 60.00083 * 4 2 1 35 35 H 1.09000 * 109.46923 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.46904 * 180.02562 * 6 5 2 37 37 H 1.09000 * 109.47598 * 300.00338 * 6 5 2 38 38 H 1.09000 * 109.46923 * 60.00755 * 6 5 2 39 39 H 1.09004 * 109.46840 * 299.99518 * 7 5 2 40 40 H 1.09000 * 109.47712 * 59.99595 * 7 5 2 41 41 H 1.09004 * 109.47059 * 179.97438 * 7 5 2 42 42 H 1.08999 * 109.46796 * 60.00185 * 8 5 2 43 43 H 1.08995 * 109.47178 * 299.99712 * 8 5 2 44 44 H 0.97003 * 120.00039 * 0.02562 * 9 8 5 45 45 H 1.07997 * 120.04248 * 0.26955 * 13 12 10 46 46 H 1.07992 * 119.83718 * 179.97438 * 14 13 12 47 47 H 1.08000 * 119.79251 * 179.97438 * 15 14 13 48 48 H 1.07996 * 119.96390 * 179.97438 * 16 15 14 49 49 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 0.0000 2.4985 7 6 3.5700 -0.7207 1.2495 8 6 1.5300 -2.1638 1.2492 9 7 2.0189 -2.8546 2.4450 10 6 1.6939 -4.1451 2.6580 11 8 0.9952 -4.7362 1.8574 12 6 2.1866 -4.8410 3.8620 13 6 2.9898 -4.1661 4.7840 14 6 3.4466 -4.8216 5.9072 15 6 3.1134 -6.1486 6.1267 16 6 2.3213 -6.8286 5.2238 17 6 1.8519 -6.1843 4.0872 18 8 1.0736 -6.8501 3.1996 19 6 0.8866 -8.1674 3.4171 20 1 1.2796 -8.6282 4.3113 21 6 0.1895 -8.9309 2.4924 22 7 -0.2895 -8.3696 1.4038 23 14 -0.0702 -10.7559 2.7942 24 1 0.5617 -11.1395 4.0822 25 1 -1.5254 -11.0462 2.8504 26 1 0.5473 -11.5330 1.6896 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 1.8938 -0.5137 3.3885 37 1 1.8934 1.0276 2.4985 38 1 0.4401 -0.0001 2.4985 39 1 3.9337 -1.2343 0.3594 40 1 3.9331 0.3070 1.2497 41 1 3.9334 -1.2342 2.1397 42 1 1.8934 -2.6775 0.3592 43 1 0.4401 -2.1638 1.2492 44 1 2.5766 -2.3832 3.0835 45 1 3.2487 -3.1306 4.6196 46 1 4.0679 -4.2987 6.6190 47 1 3.4763 -6.6541 7.0095 48 1 2.0663 -7.8628 5.4018 49 1 -0.7767 -8.9036 0.7570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817086829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:11 Heat of formation + Delta-G solvation = -72.495731 kcal Electronic energy + Delta-G solvation = -27773.777289 eV Core-core repulsion = 24086.402439 eV Total energy + Delta-G solvation = -3687.374849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.47686 -40.67051 -39.38750 -38.01794 -35.58621 -34.32880 -32.84274 -31.75140 -30.57084 -29.49794 -28.99901 -27.42167 -26.75620 -26.57494 -24.52801 -23.18791 -22.41837 -21.44333 -19.85955 -19.52113 -18.29290 -17.75539 -17.12077 -16.38096 -16.33755 -16.30095 -15.86668 -15.72676 -15.53267 -15.28996 -15.13930 -14.87881 -14.67617 -14.64575 -14.27208 -13.92668 -13.55177 -13.27826 -13.12917 -13.02575 -12.97117 -12.70329 -12.68947 -12.60851 -12.55844 -12.39905 -12.33504 -12.18716 -12.09925 -11.93644 -11.43053 -11.17690 -11.15310 -11.12440 -10.84948 -10.58448 -10.05393 -9.75933 -9.03537 -8.44967 -6.16099 0.12695 0.72493 1.31556 1.42397 1.51658 2.11424 2.15291 2.32423 2.87690 3.22738 3.46822 3.64309 3.74928 3.78005 3.99359 4.07864 4.19790 4.21623 4.29076 4.32629 4.50497 4.53448 4.62524 4.71609 4.77279 4.78043 4.82951 4.87032 4.97289 4.99238 5.04099 5.04703 5.05253 5.08106 5.12960 5.14922 5.15730 5.22241 5.27575 5.28762 5.46517 5.48268 5.60836 5.61985 5.64574 5.65648 5.69356 5.96023 6.17010 6.71982 6.94314 7.51100 7.80750 8.75889 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.003508 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.550762 B = 7980.494899 C = 9478.123694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C -0.137 4.137 4 C -0.150 4.150 5 C -0.054 4.054 6 C -0.146 4.146 7 C -0.146 4.146 8 C 0.132 3.868 9 N -0.712 5.712 10 C 0.545 3.455 11 O -0.572 6.572 12 C -0.245 4.245 13 C -0.030 4.030 14 C -0.199 4.199 15 C -0.040 4.040 16 C -0.258 4.258 17 C 0.149 3.851 18 O -0.190 6.190 19 C -0.428 4.428 20 H 0.107 0.893 21 C -0.023 4.023 22 N -0.906 5.906 23 Si 1.023 2.977 24 H -0.245 1.245 25 H -0.268 1.268 26 H -0.269 1.269 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.409 0.591 45 H 0.158 0.842 46 H 0.165 0.835 47 H 0.154 0.846 48 H 0.123 0.877 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 19.547 4.441 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.053 4.053 3 C -0.194 4.194 4 C -0.208 4.208 5 C -0.055 4.055 6 C -0.203 4.203 7 C -0.203 4.203 8 C 0.008 3.992 9 N -0.368 5.368 10 C 0.335 3.665 11 O -0.451 6.451 12 C -0.250 4.250 13 C -0.049 4.049 14 C -0.218 4.218 15 C -0.058 4.058 16 C -0.277 4.277 17 C 0.094 3.906 18 O -0.092 6.092 19 C -0.503 4.503 20 H 0.124 0.876 21 C -0.222 4.222 22 N -0.542 5.542 23 Si 0.841 3.159 24 H -0.168 1.168 25 H -0.193 1.193 26 H -0.194 1.194 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.248 0.752 45 H 0.175 0.825 46 H 0.183 0.817 47 H 0.172 0.828 48 H 0.141 0.859 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.598 19.163 3.450 21.285 hybrid contribution -0.519 -1.251 -0.225 1.373 sum 8.079 17.911 3.225 19.912 Atomic orbital electron populations 1.22039 0.95222 1.00968 1.02515 1.20449 0.95094 0.96452 0.93275 1.21926 1.01659 0.93371 1.02476 1.22038 1.01683 0.99467 0.97568 1.20714 0.96807 0.91186 0.96783 1.22016 1.01188 1.01307 0.95793 1.22016 0.93052 1.03288 1.01963 1.21473 0.97932 0.93021 0.86776 1.45692 1.54483 1.10547 1.26073 1.18581 0.79915 0.82264 0.85786 1.90925 1.39225 1.67033 1.47963 1.19326 1.11899 0.93274 1.00488 1.21277 0.92150 0.99546 0.91910 1.21178 1.05948 0.94998 0.99626 1.21435 0.92483 0.94810 0.97090 1.21304 1.07445 1.01947 0.97009 1.20088 0.88691 0.92074 0.89763 1.84187 1.57072 1.22722 1.45263 1.22089 1.37749 0.81945 1.08562 0.87567 1.26772 0.95388 1.05946 0.94081 1.70335 1.34612 1.38635 1.10584 0.84497 0.78718 0.73193 0.79485 1.16787 1.19347 1.19391 0.91477 0.91837 0.94711 0.91413 0.92249 0.91382 0.94727 0.91837 0.91513 0.92431 0.89677 0.92936 0.92985 0.89668 0.92439 0.93924 0.93839 0.75234 0.82506 0.81717 0.82790 0.85942 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 7.77 71.98 0.56 -2.45 16 2 C -0.05 -0.94 0.35 -52.18 -0.02 -0.96 16 3 C -0.14 -1.73 7.77 71.98 0.56 -1.17 16 4 C -0.15 -3.03 7.77 71.98 0.56 -2.47 16 5 C -0.05 -1.07 0.11 -52.18 -0.01 -1.08 16 6 C -0.15 -2.41 7.59 71.98 0.55 -1.86 16 7 C -0.15 -2.43 7.59 71.98 0.55 -1.88 16 8 C 0.13 4.07 3.86 86.38 0.33 4.40 16 9 N -0.71 -23.52 4.91 -466.29 -2.29 -25.81 16 10 C 0.54 25.61 7.76 86.69 0.67 26.28 16 11 O -0.57 -34.96 15.17 16.88 0.26 -34.70 16 12 C -0.25 -10.91 5.89 -19.99 -0.12 -11.03 16 13 C -0.03 -0.93 9.54 22.52 0.21 -0.72 16 14 C -0.20 -5.35 10.03 22.25 0.22 -5.13 16 15 C -0.04 -1.26 10.03 22.30 0.22 -1.03 16 16 C -0.26 -11.19 9.16 22.36 0.20 -10.99 16 17 C 0.15 7.84 6.66 22.91 0.15 7.99 16 18 O -0.19 -12.34 7.84 0.74 0.01 -12.33 16 19 C -0.43 -26.32 9.49 67.93 0.64 -25.67 16 20 H 0.11 5.87 5.21 -2.91 -0.02 5.85 16 21 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 22 N -0.91 -60.24 13.67 21.62 0.30 -59.94 16 23 Si 1.02 44.93 29.55 68.60 2.03 46.96 16 24 H -0.24 -9.70 7.11 99.48 0.71 -9.00 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 27 H 0.07 1.21 6.43 -2.39 -0.02 1.19 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.03 0.88 6.43 -2.39 -0.02 0.86 16 30 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 33 H 0.03 0.88 6.43 -2.39 -0.02 0.86 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.07 1.21 6.43 -2.39 -0.02 1.20 16 36 H 0.06 0.92 6.86 -2.38 -0.02 0.90 16 37 H 0.08 1.00 6.43 -2.39 -0.02 0.99 16 38 H 0.05 0.97 6.43 -2.39 -0.02 0.96 16 39 H 0.05 0.98 6.43 -2.39 -0.02 0.96 16 40 H 0.08 1.01 6.43 -2.39 -0.02 1.00 16 41 H 0.06 0.92 6.86 -2.38 -0.02 0.91 16 42 H 0.04 1.52 6.43 -2.39 -0.02 1.51 16 43 H 0.04 1.54 6.43 -2.39 -0.02 1.53 16 44 H 0.41 10.01 4.19 -92.71 -0.39 9.62 16 45 H 0.16 3.28 6.40 -2.91 -0.02 3.26 16 46 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 47 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 48 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 49 H 0.27 16.41 8.31 -92.71 -0.77 15.64 16 Total: -1.00 -88.14 370.47 6.65 -81.49 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.59 Total: 33.01 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 5.77 Total: -28.67 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.99 Total: -85.75 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: 0.26 Total: -47.04 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -88.14 6.65 -81.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817086829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.990 kcal (2) G-P(sol) polarization free energy of solvation -88.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds