Wall clock time and date at job start Tue Mar 31 2020 12:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 3 7 7 H 1.08990 * 109.47170 * 54.99895 * 6 5 4 8 8 O 1.42905 * 109.46848 * 294.99674 * 6 5 4 9 9 C 1.50700 * 109.46738 * 175.00110 * 6 5 4 10 10 O 1.21285 * 120.00024 * 115.00426 * 9 6 5 11 11 N 1.34771 * 120.00315 * 294.99377 * 9 6 5 12 12 C 1.46496 * 120.00544 * 180.02562 * 11 9 6 13 13 H 1.09004 * 109.47219 * 325.00419 * 12 11 9 14 14 C 1.53006 * 109.47299 * 205.00090 * 12 11 9 15 15 C 1.50698 * 109.46862 * 65.00531 * 14 12 11 16 16 H 1.07996 * 120.00076 * 359.97438 * 15 14 12 17 17 C 1.37876 * 119.99938 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99765 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00126 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46806 * 59.99883 * 19 17 15 21 21 H 1.48499 * 109.47039 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47278 * 300.00298 * 19 17 15 23 23 C 1.50702 * 109.46996 * 85.00074 * 12 11 9 24 24 C 1.38242 * 120.00008 * 39.73152 * 23 12 11 25 25 C 1.38233 * 120.00030 * 179.78787 * 24 23 12 26 26 C 1.38237 * 119.99766 * 0.43842 * 25 24 23 27 27 C 1.38238 * 120.00285 * 359.81024 * 26 25 24 28 28 C 1.38232 * 120.00202 * 220.00201 * 23 12 11 29 29 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46935 * 300.00125 * 1 2 3 31 31 H 1.09001 * 109.46812 * 59.99783 * 1 2 3 32 32 H 1.09002 * 109.46935 * 239.99874 * 2 1 3 33 33 H 1.09001 * 109.46812 * 120.00216 * 2 1 3 34 34 H 1.09002 * 109.47153 * 60.00008 * 3 2 1 35 35 H 1.09001 * 109.46832 * 300.00199 * 3 2 1 36 36 H 1.09002 * 109.47103 * 59.99753 * 4 3 2 37 37 H 1.08998 * 109.46862 * 300.00565 * 4 3 2 38 38 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 39 39 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 40 40 H 0.96702 * 113.99974 * 300.00156 * 8 6 5 41 41 H 0.97007 * 119.99831 * 0.02562 * 11 9 6 42 42 H 1.09000 * 109.46627 * 184.99634 * 14 12 11 43 43 H 1.08997 * 109.47239 * 304.99965 * 14 12 11 44 44 H 0.97000 * 119.99596 * 180.02562 * 18 17 15 45 45 H 1.08001 * 119.99695 * 359.97438 * 24 23 12 46 46 H 1.07996 * 120.00044 * 180.27822 * 25 24 23 47 47 H 1.08001 * 119.99541 * 179.83756 * 26 25 24 48 48 H 1.07994 * 119.99711 * 179.97438 * 27 26 25 49 49 H 1.08006 * 119.99777 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8848 -0.0026 7 1 5.9727 2.2952 -0.8445 8 8 6.0874 2.3156 1.2182 9 6 6.1124 4.3002 -0.1270 10 8 6.7338 4.8054 0.7837 11 7 5.8711 5.0045 -1.2504 12 6 6.3598 6.3803 -1.3717 13 1 6.3139 6.8693 -0.3985 14 6 5.4872 7.1455 -2.3687 15 6 4.0880 7.2663 -1.8223 16 1 3.8453 6.8396 -0.8604 17 6 3.1175 7.9206 -2.5509 18 7 3.4130 8.4398 -3.7225 19 14 1.3828 8.0697 -1.8739 20 1 1.4168 8.8021 -0.5824 21 1 0.5360 8.8125 -2.8415 22 1 0.8170 6.7137 -1.6592 23 6 7.7855 6.3657 -1.8597 24 6 8.1742 5.4629 -2.8318 25 6 9.4809 5.4525 -3.2826 26 6 10.4012 6.3387 -2.7548 27 6 10.0138 7.2380 -1.7790 28 6 8.7061 7.2513 -1.3313 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8891 38 1 3.7172 3.3990 0.8887 39 1 3.7164 3.3984 -0.8913 40 1 5.8027 2.7902 2.0112 41 1 5.3738 4.6006 -1.9788 42 1 5.9029 8.1408 -2.5261 43 1 5.4620 6.6081 -3.3167 44 1 2.7303 8.9005 -4.2349 45 1 7.4561 4.7678 -3.2412 46 1 9.7834 4.7503 -4.0453 47 1 11.4227 6.3288 -3.1052 48 1 10.7329 7.9301 -1.3664 49 1 8.4034 7.9539 -0.5689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827538250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:26 Heat of formation + Delta-G solvation = -104.564723 kcal Electronic energy + Delta-G solvation = -27057.750339 eV Core-core repulsion = 23368.984874 eV Total energy + Delta-G solvation = -3688.765465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.93293 -38.72722 -36.97870 -35.75801 -35.03808 -32.90870 -32.38925 -31.11543 -30.47220 -29.02158 -28.18820 -25.31604 -24.34417 -22.31647 -21.98197 -21.68388 -21.10891 -20.43228 -19.75018 -17.56216 -16.82917 -16.40240 -16.15861 -15.88680 -15.34638 -15.11714 -14.78333 -14.58304 -14.21303 -14.04614 -13.73288 -13.43543 -13.35028 -13.17138 -13.00219 -12.66486 -12.55569 -12.13208 -12.08892 -11.92264 -11.60066 -11.55052 -11.18485 -11.16929 -10.95950 -10.94799 -10.92562 -10.74855 -10.66611 -10.55370 -10.49505 -10.42883 -9.81852 -9.37633 -9.09526 -8.57164 -8.48911 -8.45957 -8.19302 -6.12939 -4.16767 1.76879 1.79399 2.98488 3.24265 3.30399 3.32447 3.63519 4.22090 4.35430 4.35731 4.65490 4.80510 4.87411 5.01120 5.10903 5.11550 5.23918 5.25937 5.26178 5.31775 5.36688 5.42613 5.53281 5.61200 5.66731 5.68473 5.84213 5.88842 5.89385 5.92646 5.97995 5.98536 6.13362 6.14824 6.26763 6.34060 6.34964 6.41923 6.54984 6.83402 6.84116 6.86214 7.08643 7.39391 7.45099 7.53944 7.60807 7.83206 8.06423 8.21670 8.67370 8.88680 9.48321 10.97521 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007947 B = 0.004506 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.276101 B = 6212.892909 C = 8916.906591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.112 4.112 5 C -0.150 4.150 6 C 0.094 3.906 7 H 0.118 0.882 8 O -0.542 6.542 9 C 0.481 3.519 10 O -0.545 6.545 11 N -0.695 5.695 12 C 0.183 3.817 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.072 4.072 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.381 0.619 41 H 0.401 0.599 42 H 0.034 0.966 43 H 0.024 0.976 44 H 0.263 0.737 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 -12.819 3.562 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.150 4.150 5 C -0.188 4.188 6 C 0.031 3.969 7 H 0.136 0.864 8 O -0.346 6.346 9 C 0.266 3.734 10 O -0.423 6.423 11 N -0.346 5.346 12 C 0.079 3.921 13 H 0.104 0.896 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.073 4.073 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.229 0.771 41 H 0.236 0.764 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.532 -12.775 3.661 13.750 hybrid contribution -1.499 0.522 0.164 1.596 sum 2.033 -12.252 3.824 12.995 Atomic orbital electron populations 1.21789 0.96098 1.01321 1.01925 1.21524 0.95684 0.97092 1.01835 1.21651 0.95438 0.96577 1.02427 1.21517 0.95116 0.95820 1.02532 1.22284 0.93777 0.98320 1.04385 1.21857 0.93964 0.91544 0.89494 0.86394 1.86524 1.77565 1.55252 1.15303 1.21464 0.80160 0.88779 0.82995 1.90672 1.41025 1.71070 1.39534 1.46018 1.55662 1.14864 1.18024 1.20256 0.88301 0.81887 1.01635 0.89604 1.19384 0.93450 0.95417 0.93034 1.21069 0.94171 1.36213 1.04470 0.92490 1.24976 0.98856 0.95346 0.94836 1.69945 1.34097 1.36732 1.12177 0.86681 0.84374 0.78279 0.78832 1.20235 1.21283 1.20205 1.20545 0.96512 0.94902 0.95333 1.20903 0.95796 0.98962 0.97012 1.21045 0.93737 0.99342 1.00158 1.21002 0.99102 0.97001 0.98189 1.21045 0.96081 0.99111 0.97820 1.21017 0.92933 0.98977 0.99775 0.93014 0.92826 0.92675 0.92116 0.92201 0.92039 0.91708 0.91903 0.91376 0.90980 0.89668 0.77070 0.76440 0.94785 0.95725 0.92775 0.86585 0.86694 0.86807 0.86587 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.23 5.21 -26.74 -0.14 -1.37 16 4 C -0.11 -1.14 5.11 -26.74 -0.14 -1.27 16 5 C -0.15 -1.76 4.86 -26.73 -0.13 -1.89 16 6 C 0.09 1.24 3.38 -27.88 -0.09 1.15 16 7 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 8 O -0.54 -7.45 12.53 -55.09 -0.69 -8.14 16 9 C 0.48 8.21 7.12 -10.99 -0.08 8.13 16 10 O -0.54 -11.28 15.99 -14.31 -0.23 -11.51 16 11 N -0.70 -12.01 3.92 -54.93 -0.22 -12.22 16 12 C 0.18 3.66 2.12 -69.08 -0.15 3.52 16 13 H 0.09 1.89 7.44 -51.93 -0.39 1.51 16 14 C 0.02 0.57 4.50 -27.88 -0.13 0.45 16 15 C -0.52 -13.38 8.84 -34.44 -0.30 -13.69 16 16 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 19 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.07 -1.33 4.92 -104.62 -0.51 -1.85 16 24 C -0.11 -1.82 9.33 -39.58 -0.37 -2.19 16 25 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 27 C -0.12 -1.87 10.05 -39.58 -0.40 -2.26 16 28 C -0.11 -1.90 9.67 -39.58 -0.38 -2.29 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.06 7.77 -51.93 -0.40 0.65 16 40 H 0.38 4.56 8.79 45.56 0.40 4.96 16 41 H 0.40 6.27 8.31 -40.82 -0.34 5.93 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.12 1.80 7.71 -52.49 -0.40 1.39 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 49 H 0.12 2.02 8.04 -52.48 -0.42 1.59 16 LS Contribution 406.88 15.07 6.13 6.13 Total: -1.00 -30.85 406.88 -10.63 -41.48 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -7.84 Total: 11.87 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -3.50 Total: -18.78 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.52 Total: -36.58 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.92 Total: -19.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.85 -10.63 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827538250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.087 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds