Wall clock time and date at job start Tue Mar 31 2020 12:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 3 7 7 H 1.08990 * 109.47170 * 54.99895 * 6 5 4 8 8 O 1.42905 * 109.46848 * 294.99674 * 6 5 4 9 9 C 1.50700 * 109.46738 * 175.00110 * 6 5 4 10 10 O 1.21285 * 120.00024 * 115.00426 * 9 6 5 11 11 N 1.34771 * 120.00315 * 294.99377 * 9 6 5 12 12 C 1.46496 * 120.00544 * 180.02562 * 11 9 6 13 13 H 1.09004 * 109.47219 * 325.00419 * 12 11 9 14 14 C 1.53006 * 109.47299 * 205.00090 * 12 11 9 15 15 C 1.50698 * 109.46862 * 65.00531 * 14 12 11 16 16 H 1.07996 * 120.00076 * 359.97438 * 15 14 12 17 17 C 1.37876 * 119.99938 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99765 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00126 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46806 * 59.99883 * 19 17 15 21 21 H 1.48499 * 109.47039 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47278 * 300.00298 * 19 17 15 23 23 C 1.50702 * 109.46996 * 85.00074 * 12 11 9 24 24 C 1.38242 * 120.00008 * 39.73152 * 23 12 11 25 25 C 1.38233 * 120.00030 * 179.78787 * 24 23 12 26 26 C 1.38237 * 119.99766 * 0.43842 * 25 24 23 27 27 C 1.38238 * 120.00285 * 359.81024 * 26 25 24 28 28 C 1.38232 * 120.00202 * 220.00201 * 23 12 11 29 29 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46935 * 300.00125 * 1 2 3 31 31 H 1.09001 * 109.46812 * 59.99783 * 1 2 3 32 32 H 1.09002 * 109.46935 * 239.99874 * 2 1 3 33 33 H 1.09001 * 109.46812 * 120.00216 * 2 1 3 34 34 H 1.09002 * 109.47153 * 60.00008 * 3 2 1 35 35 H 1.09001 * 109.46832 * 300.00199 * 3 2 1 36 36 H 1.09002 * 109.47103 * 59.99753 * 4 3 2 37 37 H 1.08998 * 109.46862 * 300.00565 * 4 3 2 38 38 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 39 39 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 40 40 H 0.96702 * 113.99974 * 300.00156 * 8 6 5 41 41 H 0.97007 * 119.99831 * 0.02562 * 11 9 6 42 42 H 1.09000 * 109.46627 * 184.99634 * 14 12 11 43 43 H 1.08997 * 109.47239 * 304.99965 * 14 12 11 44 44 H 0.97000 * 119.99596 * 180.02562 * 18 17 15 45 45 H 1.08001 * 119.99695 * 359.97438 * 24 23 12 46 46 H 1.07996 * 120.00044 * 180.27822 * 25 24 23 47 47 H 1.08001 * 119.99541 * 179.83756 * 26 25 24 48 48 H 1.07994 * 119.99711 * 179.97438 * 27 26 25 49 49 H 1.08006 * 119.99777 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8848 -0.0026 7 1 5.9727 2.2952 -0.8445 8 8 6.0874 2.3156 1.2182 9 6 6.1124 4.3002 -0.1270 10 8 6.7338 4.8054 0.7837 11 7 5.8711 5.0045 -1.2504 12 6 6.3598 6.3803 -1.3717 13 1 6.3139 6.8693 -0.3985 14 6 5.4872 7.1455 -2.3687 15 6 4.0880 7.2663 -1.8223 16 1 3.8453 6.8396 -0.8604 17 6 3.1175 7.9206 -2.5509 18 7 3.4130 8.4398 -3.7225 19 14 1.3828 8.0697 -1.8739 20 1 1.4168 8.8021 -0.5824 21 1 0.5360 8.8125 -2.8415 22 1 0.8170 6.7137 -1.6592 23 6 7.7855 6.3657 -1.8597 24 6 8.1742 5.4629 -2.8318 25 6 9.4809 5.4525 -3.2826 26 6 10.4012 6.3387 -2.7548 27 6 10.0138 7.2380 -1.7790 28 6 8.7061 7.2513 -1.3313 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8891 38 1 3.7172 3.3990 0.8887 39 1 3.7164 3.3984 -0.8913 40 1 5.8027 2.7902 2.0112 41 1 5.3738 4.6006 -1.9788 42 1 5.9029 8.1408 -2.5261 43 1 5.4620 6.6081 -3.3167 44 1 2.7303 8.9005 -4.2349 45 1 7.4561 4.7678 -3.2412 46 1 9.7834 4.7503 -4.0453 47 1 11.4227 6.3288 -3.1052 48 1 10.7329 7.9301 -1.3664 49 1 8.4034 7.9539 -0.5689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827538250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:25 Heat of formation + Delta-G solvation = -121.349536 kcal Electronic energy + Delta-G solvation = -27058.478183 eV Core-core repulsion = 23368.984874 eV Total energy + Delta-G solvation = -3689.493309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30825 -39.97954 -38.10649 -36.89418 -36.35148 -34.76425 -33.48572 -32.39594 -31.70678 -30.59582 -29.32648 -26.82854 -25.56492 -23.80454 -23.39306 -22.58524 -22.00090 -21.66961 -21.16944 -18.93350 -18.51195 -17.81694 -17.47212 -16.89042 -16.68987 -16.37879 -16.31226 -15.92952 -15.39494 -15.30245 -14.92929 -14.48097 -14.36912 -14.30424 -14.19868 -14.08602 -13.93550 -13.68388 -13.46835 -13.08154 -12.90808 -12.77648 -12.66287 -12.55689 -12.43752 -12.16332 -12.01537 -11.89035 -11.73536 -11.72092 -11.60052 -11.51712 -11.34497 -11.32863 -10.62092 -10.40264 -10.00306 -9.76902 -9.52906 -8.20069 -6.30234 0.49745 0.54592 1.39661 1.41571 1.48904 1.62035 2.27169 2.39458 2.95984 3.14352 3.29892 3.68987 3.84581 3.95344 4.01571 4.02205 4.09492 4.18243 4.20051 4.30991 4.33621 4.43705 4.49539 4.60040 4.64436 4.75175 4.77326 4.78654 4.82624 4.94564 5.04859 5.10131 5.11483 5.18530 5.18763 5.24861 5.26286 5.38494 5.42522 5.48652 5.55907 5.59017 5.59900 5.62997 5.77492 5.88575 6.15144 6.19676 6.48624 6.71967 6.82085 7.28946 7.38823 8.90474 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007947 B = 0.004506 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.276101 B = 6212.892909 C = 8916.906591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.104 4.104 5 C -0.143 4.143 6 C 0.108 3.892 7 H 0.141 0.859 8 O -0.547 6.547 9 C 0.478 3.522 10 O -0.585 6.585 11 N -0.690 5.690 12 C 0.200 3.800 13 H 0.056 0.944 14 C 0.039 3.961 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.926 5.926 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.262 1.262 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.135 4.135 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.388 0.612 41 H 0.409 0.591 42 H 0.001 0.999 43 H 0.013 0.987 44 H 0.264 0.736 45 H 0.123 0.877 46 H 0.148 0.852 47 H 0.151 0.849 48 H 0.143 0.857 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.363 -14.761 3.244 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.142 4.142 5 C -0.181 4.181 6 C 0.045 3.955 7 H 0.159 0.841 8 O -0.353 6.353 9 C 0.265 3.735 10 O -0.466 6.466 11 N -0.340 5.340 12 C 0.094 3.906 13 H 0.074 0.926 14 C 0.001 3.999 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.777 3.223 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.187 1.187 23 C -0.101 4.101 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.237 0.763 41 H 0.245 0.755 42 H 0.019 0.981 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.141 0.859 46 H 0.165 0.835 47 H 0.169 0.831 48 H 0.161 0.839 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.978 -14.741 3.344 15.630 hybrid contribution -1.556 1.159 0.263 1.957 sum 2.422 -13.582 3.607 14.260 Atomic orbital electron populations 1.21801 0.95905 1.01919 1.01630 1.21510 0.95870 0.96208 1.02346 1.21640 0.95289 0.97375 1.01784 1.21458 0.95139 0.94367 1.03194 1.22233 0.92561 0.99613 1.03722 1.21884 0.94670 0.88781 0.90136 0.84150 1.86507 1.77840 1.55213 1.15727 1.22245 0.79201 0.90126 0.81884 1.90649 1.42860 1.72318 1.40735 1.45904 1.55640 1.13810 1.18670 1.19720 0.89269 0.82735 0.98845 0.92581 1.19122 0.93235 0.94094 0.93415 1.21336 0.95203 1.35758 1.04235 0.92680 1.25744 1.02723 0.95052 0.95036 1.70063 1.35328 1.37698 1.13447 0.85701 0.79829 0.78814 0.77929 1.20258 1.21066 1.18675 1.20473 0.95634 0.96789 0.97175 1.21095 0.97262 0.98840 0.96824 1.21460 0.92779 0.99715 1.00285 1.21481 1.00753 0.95613 0.96924 1.21390 0.95334 0.99701 0.97804 1.21180 0.94395 0.99278 1.00508 0.91999 0.93003 0.93112 0.91598 0.91667 0.92568 0.92512 0.90792 0.91092 0.91773 0.90265 0.76287 0.75455 0.98062 0.96852 0.92760 0.85866 0.83464 0.83099 0.83910 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.12 -1.92 5.93 30.60 0.18 -1.74 16 3 C -0.12 -2.27 5.21 30.59 0.16 -2.12 16 4 C -0.10 -1.91 5.11 30.59 0.16 -1.75 16 5 C -0.14 -3.22 4.86 30.59 0.15 -3.08 16 6 C 0.11 2.72 3.38 29.85 0.10 2.82 16 7 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 8 O -0.55 -14.35 12.53 -129.99 -1.63 -15.98 16 9 C 0.48 16.46 7.12 87.66 0.62 17.09 16 10 O -0.58 -24.84 15.99 15.94 0.25 -24.59 16 11 N -0.69 -24.35 3.92 -446.09 -1.75 -26.10 16 12 C 0.20 8.37 2.12 44.25 0.09 8.47 16 13 H 0.06 2.65 7.44 -2.38 -0.02 2.64 16 14 C 0.04 1.91 4.50 29.85 0.13 2.04 16 15 C -0.53 -27.86 8.84 25.60 0.23 -27.63 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.93 -53.25 13.29 21.45 0.28 -52.96 16 19 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 C -0.10 -3.81 4.92 -19.86 -0.10 -3.90 16 24 C -0.12 -4.04 9.33 22.27 0.21 -3.83 16 25 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 26 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 27 C -0.12 -3.63 10.05 22.27 0.22 -3.40 16 28 C -0.13 -4.88 9.67 22.27 0.22 -4.66 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.29 7.82 -2.39 -0.02 1.27 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.90 7.77 -2.39 -0.02 1.88 16 40 H 0.39 9.01 8.79 -74.06 -0.65 8.36 16 41 H 0.41 12.92 8.31 -92.70 -0.77 12.15 16 42 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.12 3.75 7.71 -2.91 -0.02 3.73 16 46 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 47 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 48 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 49 H 0.11 4.02 8.04 -2.91 -0.02 4.00 16 Total: -1.00 -67.76 406.88 2.69 -65.07 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.50 Total: 38.63 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 4.00 Total: -28.49 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.46 Total: -79.07 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -1.37 Total: -40.57 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -67.76 2.69 -65.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827538250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.281 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds