Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47435 * 2 1 4 4 C 1.52997 * 109.47435 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47047 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46897 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.46950 * 304.99886 * 6 5 4 8 8 O 1.42895 * 109.47279 * 64.99574 * 6 5 4 9 9 C 1.50702 * 109.46676 * 185.00237 * 6 5 4 10 10 O 1.21285 * 119.99337 * 244.99604 * 9 6 5 11 11 N 1.34766 * 120.00436 * 65.00110 * 9 6 5 12 12 C 1.46500 * 120.00394 * 179.97438 * 11 9 6 13 13 H 1.09003 * 109.46756 * 325.00093 * 12 11 9 14 14 C 1.52993 * 109.47545 * 204.99959 * 12 11 9 15 15 C 1.50699 * 109.47311 * 64.99567 * 14 12 11 16 16 H 1.07996 * 119.99974 * 0.02562 * 15 14 12 17 17 C 1.37886 * 120.00057 * 180.02562 * 15 14 12 18 18 N 1.31510 * 119.99707 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99861 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47105 * 60.00386 * 19 17 15 21 21 H 1.48497 * 109.47081 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47471 * 300.00055 * 19 17 15 23 23 C 1.50702 * 109.47266 * 84.99219 * 12 11 9 24 24 C 1.38234 * 120.00271 * 220.00163 * 23 12 11 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99485 * 39.98291 * 23 12 11 29 29 H 1.08991 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47299 * 299.99886 * 1 2 3 31 31 H 1.09006 * 109.47119 * 59.99654 * 1 2 3 32 32 H 1.09006 * 109.46999 * 240.00618 * 2 1 3 33 33 H 1.08993 * 109.47235 * 120.00607 * 2 1 3 34 34 H 1.09006 * 109.46523 * 60.00326 * 3 2 1 35 35 H 1.08993 * 109.47404 * 300.00503 * 3 2 1 36 36 H 1.09006 * 109.46999 * 60.00618 * 4 3 2 37 37 H 1.09006 * 109.47119 * 300.00346 * 4 3 2 38 38 H 1.08993 * 109.47236 * 60.00485 * 5 4 3 39 39 H 1.08997 * 109.46910 * 299.99883 * 5 4 3 40 40 H 0.96705 * 113.99694 * 60.00725 * 8 6 5 41 41 H 0.97007 * 120.00135 * 359.97438 * 11 9 6 42 42 H 1.08999 * 109.47670 * 184.99752 * 14 12 11 43 43 H 1.09010 * 109.47007 * 304.99841 * 14 12 11 44 44 H 0.97004 * 120.00100 * 179.97438 * 18 17 15 45 45 H 1.08001 * 119.99769 * 359.97438 * 24 23 12 46 46 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 47 47 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 48 48 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 49 49 H 1.07997 * 120.00489 * 0.02562 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6101 2.8849 -0.0013 7 1 5.9741 2.2948 0.8398 8 8 6.0854 2.3164 -1.2231 9 6 6.1124 4.3003 0.1232 10 8 6.7323 4.8060 -0.7883 11 7 5.8730 5.0040 1.2474 12 6 6.3618 6.3796 1.3687 13 1 7.3218 6.4702 0.8602 14 6 6.5329 6.7317 2.8477 15 6 7.6141 5.8701 3.4474 16 1 8.1281 5.1443 2.8348 17 6 7.9470 6.0083 4.7783 18 7 7.3207 6.8918 5.5244 19 14 9.2867 4.9398 5.5218 20 1 10.5653 5.1790 4.8054 21 1 9.4528 5.2816 6.9573 22 1 8.9075 3.5098 5.3936 23 6 5.3692 7.3228 0.7393 24 6 5.8144 8.3966 -0.0088 25 6 4.9039 9.2614 -0.5865 26 6 3.5480 9.0522 -0.4167 27 6 3.1028 7.9778 0.3305 28 6 4.0134 7.1139 0.9097 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9330 0.9288 -0.8910 37 1 3.9337 0.9284 0.8891 38 1 3.7171 3.3982 0.8904 39 1 3.7163 3.3993 -0.8895 40 1 5.7994 2.7915 -2.0154 41 1 5.3769 4.5995 1.9764 42 1 6.8110 7.7814 2.9416 43 1 5.5945 6.5559 3.3739 44 1 7.5546 6.9889 6.4608 45 1 6.8737 8.5599 -0.1418 46 1 5.2516 10.1002 -1.1713 47 1 2.8367 9.7304 -0.8644 48 1 2.0435 7.8145 0.4636 49 1 3.6655 6.2751 1.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827538252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = -121.573140 kcal Electronic energy + Delta-G solvation = -27087.954157 eV Core-core repulsion = 23398.451151 eV Total energy + Delta-G solvation = -3689.503006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31586 -39.96995 -38.11387 -36.88888 -36.35041 -34.77824 -33.47942 -32.39462 -31.70035 -30.59617 -29.31811 -26.83081 -25.55309 -23.80455 -23.38375 -22.55351 -22.01937 -21.66335 -21.16008 -18.97163 -18.48859 -17.79542 -17.50422 -16.90475 -16.70326 -16.42273 -16.19485 -15.97865 -15.39511 -15.24597 -14.94460 -14.51352 -14.33520 -14.26816 -14.19735 -14.12996 -13.90943 -13.68399 -13.46785 -13.05706 -12.93328 -12.74632 -12.65902 -12.54642 -12.44561 -12.15812 -12.00093 -11.88816 -11.72324 -11.70302 -11.60479 -11.50919 -11.35826 -11.30920 -10.63126 -10.39674 -10.01079 -9.75880 -9.52097 -8.21482 -6.31937 0.50652 0.55662 1.39687 1.41428 1.49195 1.62219 2.26490 2.39130 2.96787 3.12660 3.29434 3.67741 3.87878 3.98471 3.99042 4.02906 4.09994 4.20401 4.20921 4.32086 4.35409 4.43801 4.50490 4.61766 4.64984 4.75487 4.78049 4.79629 4.85300 4.95884 5.04247 5.11077 5.11936 5.19608 5.20119 5.25691 5.27911 5.40232 5.41445 5.50771 5.57500 5.59462 5.60904 5.64156 5.76492 5.89189 6.15047 6.19661 6.49792 6.72480 6.80577 7.28701 7.37340 8.88875 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007732 B = 0.004194 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.668688 B = 6674.908746 C = 8613.907877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.135 4.135 6 C 0.102 3.898 7 H 0.131 0.869 8 O -0.549 6.549 9 C 0.479 3.521 10 O -0.585 6.585 11 N -0.690 5.690 12 C 0.198 3.802 13 H 0.053 0.947 14 C 0.039 3.961 15 C -0.533 4.533 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.954 3.046 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.264 1.264 23 C -0.097 4.097 24 C -0.136 4.136 25 C -0.124 4.124 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.388 0.612 41 H 0.409 0.591 42 H 0.001 0.999 43 H 0.015 0.985 44 H 0.264 0.736 45 H 0.109 0.891 46 H 0.142 0.858 47 H 0.151 0.849 48 H 0.148 0.852 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.729 -7.429 -11.382 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.147 4.147 5 C -0.173 4.173 6 C 0.040 3.960 7 H 0.148 0.852 8 O -0.355 6.355 9 C 0.266 3.734 10 O -0.466 6.466 11 N -0.340 5.340 12 C 0.093 3.907 13 H 0.071 0.929 14 C 0.002 3.998 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.780 3.220 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.189 1.189 23 C -0.098 4.098 24 C -0.154 4.154 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.140 4.140 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.245 0.755 42 H 0.020 0.980 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.127 0.873 46 H 0.160 0.840 47 H 0.169 0.831 48 H 0.166 0.834 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.021 -7.444 -11.438 19.566 hybrid contribution 0.817 0.147 0.753 1.120 sum -13.205 -7.297 -10.685 18.487 Atomic orbital electron populations 1.21782 0.95590 1.01835 1.01866 1.21531 0.96117 0.96644 1.02033 1.21598 0.94585 0.97114 1.02218 1.21495 0.95699 0.94665 1.02825 1.22181 0.91580 0.99501 1.04051 1.21929 0.95547 0.88741 0.89830 0.85158 1.86531 1.78038 1.55174 1.15717 1.22222 0.79285 0.89887 0.81992 1.90648 1.42735 1.72365 1.40825 1.45900 1.56149 1.13883 1.18073 1.19718 0.93828 0.80087 0.97052 0.92853 1.19115 0.96432 0.95661 0.88605 1.21373 1.20025 1.20570 0.95105 0.92956 1.25758 0.98508 0.96585 0.97748 1.70055 1.43014 1.35805 1.07540 0.85665 0.79514 0.79651 0.77209 1.20300 1.20786 1.18893 1.20409 0.95413 0.96531 0.97423 1.21167 1.00041 0.95803 0.98408 1.21371 0.93698 0.99331 0.99800 1.21470 0.95663 0.98296 0.99259 1.21448 1.00370 0.94856 0.97370 1.21067 0.92090 1.00406 1.00122 0.92429 0.92756 0.92681 0.92058 0.92081 0.91819 0.91970 0.91501 0.91501 0.89650 0.90949 0.76253 0.75457 0.98026 0.96702 0.92668 0.87295 0.84041 0.83150 0.83431 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.13 -1.71 5.93 30.59 0.18 -1.53 16 3 C -0.12 -1.71 5.21 30.59 0.16 -1.55 16 4 C -0.11 -1.79 5.11 30.59 0.16 -1.63 16 5 C -0.14 -2.57 4.86 30.60 0.15 -2.42 16 6 C 0.10 2.61 3.38 29.85 0.10 2.71 16 7 H 0.13 3.14 8.14 -2.38 -0.02 3.12 16 8 O -0.55 -14.71 12.53 -129.99 -1.63 -16.34 16 9 C 0.48 16.57 7.12 87.66 0.62 17.20 16 10 O -0.59 -24.95 15.99 15.94 0.25 -24.70 16 11 N -0.69 -24.43 3.93 -446.11 -1.75 -26.18 16 12 C 0.20 8.35 2.11 44.24 0.09 8.44 16 13 H 0.05 2.56 7.44 -2.39 -0.02 2.54 16 14 C 0.04 1.95 4.49 29.85 0.13 2.09 16 15 C -0.53 -28.77 8.84 25.60 0.23 -28.54 16 16 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 17 C 0.01 0.71 5.46 84.66 0.46 1.18 16 18 N -0.92 -53.56 13.29 21.45 0.28 -53.28 16 19 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 23 C -0.10 -3.61 4.91 -19.87 -0.10 -3.70 16 24 C -0.14 -4.81 9.67 22.27 0.22 -4.59 16 25 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 26 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 27 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 28 C -0.12 -3.75 9.32 22.27 0.21 -3.54 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.15 7.82 -2.38 -0.02 1.14 16 37 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 1.53 7.77 -2.39 -0.02 1.51 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.39 8.82 8.79 -74.05 -0.65 8.17 16 41 H 0.41 12.95 8.31 -92.70 -0.77 12.18 16 42 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.01 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 45 H 0.11 3.92 8.04 -2.91 -0.02 3.90 16 46 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 47 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 48 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 49 H 0.12 3.58 7.72 -2.91 -0.02 3.56 16 Total: -1.00 -68.81 406.89 2.68 -66.12 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -0.50 Total: 35.41 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.00 Total: -26.28 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.47 Total: -79.46 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.37 Total: -41.04 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -68.81 2.68 -66.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827538252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.450 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds