Wall clock time and date at job start Tue Mar 31 2020 13:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46713 * 2 1 4 4 C 1.53006 * 109.46713 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47437 * 305.00481 * 4 3 2 6 6 O 1.42900 * 109.46674 * 65.00529 * 4 3 2 7 7 C 1.52999 * 109.46856 * 184.99984 * 4 3 2 8 8 C 1.53005 * 109.46912 * 175.00299 * 7 4 3 9 9 N 1.46502 * 109.46864 * 179.97438 * 8 7 4 10 10 C 1.34777 * 119.99559 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00046 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99686 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.46990 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46934 * 305.97546 * 13 12 10 15 15 C 1.50700 * 109.47299 * 65.97885 * 13 12 10 16 16 H 1.08008 * 119.99531 * 26.90748 * 15 13 12 17 17 C 1.37869 * 120.00160 * 206.90965 * 15 13 12 18 18 N 1.31508 * 120.00032 * 353.27812 * 17 15 13 19 19 Si 1.86806 * 120.00073 * 173.54969 * 17 15 13 20 20 H 1.48497 * 109.46895 * 179.72442 * 19 17 15 21 21 H 1.48495 * 109.46957 * 299.72695 * 19 17 15 22 22 H 1.48501 * 109.46761 * 59.72686 * 19 17 15 23 23 C 1.50705 * 109.47056 * 185.97689 * 13 12 10 24 24 C 1.38237 * 120.00118 * 294.44966 * 23 13 12 25 25 C 1.38237 * 119.99818 * 179.78603 * 24 23 13 26 26 C 1.38236 * 120.00003 * 0.44191 * 25 24 23 27 27 C 1.38236 * 119.99991 * 359.81061 * 26 25 24 28 28 C 1.38228 * 119.99825 * 114.71859 * 23 13 12 29 29 H 1.08999 * 109.47243 * 59.99654 * 1 2 3 30 30 H 1.09000 * 109.46743 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46664 * 299.99838 * 1 2 3 32 32 H 1.09001 * 109.47020 * 240.00814 * 2 1 3 33 33 H 1.08999 * 109.47243 * 120.00346 * 2 1 3 34 34 H 1.08991 * 109.46865 * 60.00594 * 3 2 1 35 35 H 1.08999 * 109.47548 * 300.00159 * 3 2 1 36 36 H 0.96694 * 114.00657 * 59.99771 * 6 4 3 37 37 H 1.08998 * 109.46969 * 55.00492 * 7 4 3 38 38 H 1.09005 * 109.47186 * 295.00228 * 7 4 3 39 39 H 1.08998 * 109.47146 * 60.00301 * 8 7 4 40 40 H 1.08995 * 109.46642 * 299.99928 * 8 7 4 41 41 H 0.97002 * 120.00062 * 0.02562 * 9 8 7 42 42 H 1.09000 * 109.47229 * 60.00363 * 12 10 9 43 43 H 1.09003 * 109.47630 * 300.00294 * 12 10 9 44 44 H 0.97008 * 120.00303 * 354.69126 * 18 17 15 45 45 H 1.08005 * 119.99967 * 359.97438 * 24 23 13 46 46 H 1.07999 * 119.99448 * 180.27078 * 25 24 23 47 47 H 1.07997 * 119.99991 * 179.83259 * 26 25 24 48 48 H 1.07993 * 119.99965 * 180.02562 * 27 26 25 49 49 H 1.07999 * 120.00249 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8408 6 8 4.0457 0.8735 -1.2221 7 6 4.0800 2.8796 0.1251 8 6 5.6049 2.8704 0.2498 9 7 6.0933 4.2465 0.3695 10 6 7.4142 4.4843 0.4923 11 8 8.1986 3.5593 0.5031 12 6 7.9166 5.8997 0.6161 13 6 9.4415 5.8906 0.7406 14 1 9.7350 5.2375 1.5624 15 6 10.0474 5.3855 -0.5434 16 1 9.5159 5.5070 -1.4758 17 6 11.2802 4.7684 -0.5280 18 7 11.9863 4.7375 0.5810 19 14 11.9510 3.9829 -2.0845 20 1 13.2869 3.3969 -1.8070 21 1 11.0257 2.9135 -2.5376 22 1 12.0735 5.0140 -3.1461 23 6 9.9318 7.2898 1.0112 24 6 9.7785 8.2734 0.0521 25 6 10.2242 9.5579 0.3021 26 6 10.8315 9.8564 1.5075 27 6 10.9896 8.8715 2.4644 28 6 10.5398 7.5881 2.2162 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.7601 1.3480 -2.0147 37 1 3.6458 3.3430 1.0109 38 1 3.7912 3.4464 -0.7601 39 1 6.0392 2.4070 -0.6361 40 1 5.8936 2.3037 1.1349 41 1 5.4659 4.9862 0.3612 42 1 7.4821 6.3633 1.5018 43 1 7.6281 6.4665 -0.2692 44 1 11.6762 5.2142 1.3669 45 1 9.3077 8.0392 -0.8913 46 1 10.1005 10.3274 -0.4455 47 1 11.1822 10.8593 1.7017 48 1 11.4636 9.1048 3.4063 49 1 10.6632 6.8187 2.9639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832673400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:09 Heat of formation + Delta-G solvation = -98.294122 kcal Electronic energy + Delta-G solvation = -26302.303140 eV Core-core repulsion = 22613.809588 eV Total energy + Delta-G solvation = -3688.493552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.27080 -38.57387 -38.10478 -34.88530 -34.40297 -34.04201 -31.59871 -31.10462 -30.10476 -29.11287 -27.92818 -25.20254 -23.77337 -22.72091 -21.70037 -21.65862 -21.35804 -20.21885 -19.41365 -16.97799 -16.66264 -16.47741 -16.14185 -15.74024 -15.59539 -15.24765 -14.65235 -14.24917 -14.22054 -13.94549 -13.74610 -13.62794 -13.45996 -12.98298 -12.71725 -12.41341 -12.32357 -12.20434 -12.14837 -12.02978 -11.81911 -11.52919 -11.41140 -11.25828 -11.00283 -10.95445 -10.83687 -10.69029 -10.42464 -10.16593 -10.08356 -10.01110 -9.66217 -8.99281 -8.61937 -8.54340 -8.25119 -8.13299 -7.62626 -6.19706 -3.88472 2.19636 2.25263 3.50295 3.53181 3.58945 3.61050 3.74168 4.15358 4.40512 4.61156 4.62645 4.67721 4.70206 4.85837 4.93900 5.09126 5.15316 5.30562 5.44645 5.45787 5.46841 5.56444 5.60118 5.64038 5.65183 5.69773 5.75538 5.77063 5.88998 6.00330 6.01174 6.05712 6.12166 6.14921 6.21664 6.32456 6.43204 6.70334 6.79895 6.91074 6.93932 7.21971 7.23854 7.39195 7.45165 7.74501 7.86605 8.06137 8.25431 8.54170 8.99307 9.06271 9.80327 11.19808 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.002652 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.937659 B =10554.142636 C =11889.511813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.150 4.150 4 C 0.108 3.892 5 H 0.101 0.899 6 O -0.557 6.557 7 C -0.162 4.162 8 C 0.125 3.875 9 N -0.752 5.752 10 C 0.511 3.489 11 O -0.498 6.498 12 C -0.116 4.116 13 C 0.073 3.927 14 H 0.049 0.951 15 C -0.567 4.567 16 H 0.045 0.955 17 C 0.031 3.969 18 N -0.906 5.906 19 Si 1.060 2.940 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.291 1.291 23 C -0.033 4.033 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.152 4.152 27 C -0.125 4.125 28 C -0.130 4.130 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.373 0.627 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.391 0.609 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.271 0.729 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.407 0.246 0.294 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.188 4.188 4 C 0.049 3.951 5 H 0.118 0.882 6 O -0.362 6.362 7 C -0.200 4.200 8 C 0.001 3.999 9 N -0.408 5.408 10 C 0.297 3.703 11 O -0.369 6.369 12 C -0.156 4.156 13 C 0.054 3.946 14 H 0.067 0.933 15 C -0.604 4.604 16 H 0.063 0.937 17 C -0.174 4.174 18 N -0.542 5.542 19 Si 0.889 3.111 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.218 1.218 23 C -0.034 4.034 24 C -0.124 4.124 25 C -0.148 4.148 26 C -0.171 4.171 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.220 0.780 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.224 0.776 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.232 -1.790 0.123 18.320 hybrid contribution -1.834 1.819 0.185 2.589 sum -20.066 0.028 0.308 20.068 Atomic orbital electron populations 1.21791 0.96052 1.01593 1.01611 1.21476 0.95422 0.96418 1.02720 1.22332 0.95967 0.97772 1.02756 1.21901 0.92182 0.92925 0.88116 0.88150 1.86632 1.77041 1.57005 1.15527 1.22521 0.96325 0.98075 1.03094 1.21119 0.92133 0.84286 1.02363 1.46197 1.08200 1.07880 1.78472 1.20858 0.80933 0.92573 0.75898 1.90758 1.54468 1.45694 1.45971 1.21659 1.00169 0.92436 1.01371 1.17862 0.88394 0.88566 0.99825 0.93273 1.21522 1.05630 1.41319 0.91948 0.93713 1.25582 0.93946 0.95215 1.02659 1.70733 1.40055 1.40800 1.02562 0.83686 0.76255 0.76416 0.74723 1.20939 1.21445 1.21757 1.20866 0.94241 0.96919 0.91332 1.20924 1.00451 0.92133 0.98931 1.21014 1.00207 0.96763 0.96853 1.20822 1.02757 0.98515 0.94973 1.20964 1.00752 0.93773 0.98794 1.21075 1.00413 0.95844 0.97496 0.92881 0.92781 0.92891 0.91277 0.92007 0.91058 0.91638 0.77989 0.90590 0.91095 0.91205 0.92204 0.77642 0.91728 0.90339 0.91814 0.86701 0.87464 0.87595 0.87459 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.87 5.83 -26.73 -0.16 -1.02 16 3 C -0.15 -1.00 4.89 -26.73 -0.13 -1.13 16 4 C 0.11 0.93 2.97 -26.73 -0.08 0.85 16 5 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 6 O -0.56 -5.61 12.41 -35.23 -0.44 -6.05 16 7 C -0.16 -1.42 5.01 -26.73 -0.13 -1.55 16 8 C 0.12 1.70 5.57 -4.04 -0.02 1.68 16 9 N -0.75 -11.14 5.56 -60.29 -0.33 -11.48 16 10 C 0.51 10.37 7.58 -10.99 -0.08 10.28 16 11 O -0.50 -12.81 15.02 5.55 0.08 -12.73 16 12 C -0.12 -2.27 4.95 -27.88 -0.14 -2.41 16 13 C 0.07 1.76 1.23 -92.92 -0.11 1.65 16 14 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 15 C -0.57 -15.64 6.35 -34.44 -0.22 -15.86 16 16 H 0.04 1.24 7.82 -52.48 -0.41 0.83 16 17 C 0.03 0.92 5.45 -17.83 -0.10 0.82 16 18 N -0.91 -28.09 13.56 55.43 0.75 -27.34 16 19 Si 1.06 26.69 29.91 -169.99 -5.08 21.60 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 C -0.03 -0.73 4.53 -104.62 -0.47 -1.21 16 24 C -0.11 -2.19 8.90 -39.58 -0.35 -2.54 16 25 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 26 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 27 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 28 C -0.13 -2.74 9.18 -39.58 -0.36 -3.10 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.54 7.82 -51.93 -0.41 0.14 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.37 2.53 9.05 45.56 0.41 2.94 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.12 7.82 -51.93 -0.41 0.71 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.39 4.42 8.47 -40.82 -0.35 4.07 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.43 7.96 -51.93 -0.41 1.01 16 44 H 0.27 8.25 6.24 -40.82 -0.25 7.99 16 45 H 0.11 2.31 7.85 -52.48 -0.41 1.90 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 48 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.29 7.95 -52.49 -0.42 1.88 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -35.06 401.58 -9.87 -44.93 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.71 Total: 7.62 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -3.19 Total: -22.62 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.42 Total: -38.81 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.35 Total: -18.78 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -5.08 Total: 21.60 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.06 -9.87 -44.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832673400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.360 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds