Wall clock time and date at job start Tue Mar 31 2020 12:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.53002 * 109.47172 * 239.99999 * 2 1 3 5 5 C 1.53001 * 109.47504 * 120.00025 * 2 1 3 6 6 N 1.46907 * 109.46837 * 52.30095 * 5 2 1 7 7 C 1.46904 * 110.99870 * 202.18695 * 6 5 2 8 8 C 1.50693 * 109.47372 * 66.04274 * 7 6 5 9 9 H 1.08000 * 120.00077 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99992 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00080 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99916 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47380 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47300 * 120.00011 * 12 10 8 15 15 H 1.48500 * 109.46973 * 239.99707 * 12 10 8 16 16 C 1.46895 * 111.00109 * 78.23155 * 6 5 2 17 17 C 1.50698 * 109.47286 * 167.08064 * 16 6 5 18 18 C 1.38258 * 119.99952 * 235.85319 * 17 16 6 19 19 C 1.38211 * 120.00008 * 179.74227 * 18 17 16 20 20 C 1.38262 * 119.99765 * 0.55008 * 19 18 17 21 21 C 1.38213 * 119.99939 * 359.70608 * 20 19 18 22 22 C 1.38216 * 120.00089 * 56.12589 * 17 16 6 23 23 C 1.50704 * 119.99582 * 0.02562 * 22 17 16 24 24 C 1.50699 * 109.47148 * 77.15852 * 23 22 17 25 25 O 1.20830 * 119.99667 * 359.97438 * 24 23 22 26 26 O 1.34223 * 119.99875 * 179.97438 * 24 23 22 27 27 H 1.09000 * 109.47183 * 293.07599 * 1 2 3 28 28 H 1.08996 * 109.47364 * 53.08671 * 1 2 3 29 29 H 1.09009 * 109.47075 * 173.08141 * 1 2 3 30 30 H 1.09001 * 109.47559 * 184.83213 * 3 2 1 31 31 H 1.09001 * 109.47194 * 304.83878 * 3 2 1 32 32 H 1.08999 * 109.47078 * 64.83741 * 3 2 1 33 33 H 1.08992 * 109.47592 * 319.26492 * 4 2 1 34 34 H 1.09001 * 109.47218 * 79.27028 * 4 2 1 35 35 H 1.09004 * 109.47184 * 199.26188 * 4 2 1 36 36 H 1.08997 * 109.47092 * 292.30659 * 5 2 1 37 37 H 1.08996 * 109.47494 * 172.30237 * 5 2 1 38 38 H 1.09000 * 109.47217 * 186.05104 * 7 6 5 39 39 H 1.09011 * 109.46697 * 306.04239 * 7 6 5 40 40 H 0.97001 * 120.00160 * 180.02562 * 11 10 8 41 41 H 1.09003 * 109.46647 * 287.08122 * 16 6 5 42 42 H 1.08999 * 109.47017 * 47.07830 * 16 6 5 43 43 H 1.08007 * 120.00063 * 359.97438 * 18 17 16 44 44 H 1.08004 * 120.00432 * 180.27702 * 19 18 17 45 45 H 1.08000 * 119.99747 * 179.72272 * 20 19 18 46 46 H 1.08004 * 119.99960 * 180.02562 * 21 20 19 47 47 H 1.09001 * 109.46503 * 197.15468 * 23 22 17 48 48 H 1.08998 * 109.47441 * 317.15313 * 23 22 17 49 49 H 0.96698 * 116.99857 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.4047 -2.0423 1.3456 7 6 1.4340 -2.5410 2.7271 8 6 0.5704 -1.6636 3.5962 9 1 0.0521 -0.8197 3.1656 10 6 0.4430 -1.9377 4.9414 11 7 1.0745 -2.9651 5.4659 12 14 -0.6280 -0.8505 6.0187 13 1 -1.2253 0.2297 5.1932 14 1 -1.7104 -1.6668 6.6249 15 1 0.2007 -0.2499 7.0947 16 6 2.0369 -2.9987 0.4272 17 6 1.5887 -4.3960 0.7702 18 6 2.5256 -5.3732 1.0507 19 6 2.1144 -6.6534 1.3706 20 6 0.7664 -6.9596 1.3989 21 6 -0.1700 -5.9840 1.1133 22 6 0.2412 -4.7021 0.7989 23 6 -0.7798 -3.6385 0.4866 24 6 -0.8382 -3.4203 -1.0034 25 8 -0.1236 -4.0623 -1.7364 26 8 -1.6839 -2.5129 -1.5161 27 1 -0.3633 0.4028 0.9454 28 1 -0.3634 0.6172 -0.8216 29 1 -0.3634 -1.0203 -0.1238 30 1 3.1265 1.4438 -0.0866 31 1 1.6076 1.9808 -0.8435 32 1 1.7491 1.9307 0.9301 33 1 1.4270 -1.6030 -1.4355 34 1 1.9807 -0.0500 -2.1060 35 1 3.0758 -1.0244 -1.0963 36 1 1.7934 -0.1342 2.1338 37 1 3.1213 -0.8420 1.1831 38 1 1.0556 -3.5629 2.7526 39 1 2.4589 -2.5238 3.0979 40 1 0.9845 -3.1581 6.4123 41 1 1.7464 -2.7651 -0.5971 42 1 3.1207 -2.9313 0.5218 43 1 3.5788 -5.1353 1.0236 44 1 2.8461 -7.4157 1.5941 45 1 0.4453 -7.9611 1.6444 46 1 -1.2230 -6.2231 1.1358 47 1 -1.7583 -3.9576 0.8457 48 1 -0.4977 -2.7080 0.9793 49 1 -1.6854 -2.4081 -2.4774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833430262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:59 Heat of formation + Delta-G solvation = -65.617376 kcal Electronic energy + Delta-G solvation = -29540.640655 eV Core-core repulsion = 25853.564073 eV Total energy + Delta-G solvation = -3687.076582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35931 -39.02327 -37.83779 -35.78296 -34.79313 -32.68209 -32.28792 -30.83790 -28.12465 -27.53547 -26.73915 -26.67726 -25.75423 -23.65361 -22.34951 -21.66491 -20.59293 -19.49280 -18.40889 -17.77428 -16.50045 -16.23937 -15.97424 -15.76338 -14.97568 -14.83199 -14.64150 -14.39023 -14.12377 -13.95078 -13.25516 -13.06308 -12.89339 -12.68428 -12.51834 -12.34053 -12.06637 -12.01384 -11.89812 -11.69513 -11.65354 -11.33435 -11.24184 -11.06384 -10.85328 -10.81656 -10.61431 -10.58616 -10.38636 -10.22124 -10.17954 -10.10924 -9.92950 -9.61465 -9.13102 -8.45677 -8.32818 -7.99373 -7.24264 -6.01398 -4.02639 1.80326 1.89851 2.59906 3.29792 3.38293 3.41620 3.45904 4.28842 4.42831 4.86630 5.11274 5.22289 5.25999 5.28738 5.34512 5.39183 5.41416 5.54146 5.70281 5.72353 5.80459 5.87207 5.91802 5.99343 6.01188 6.06716 6.07995 6.11693 6.22148 6.30386 6.39072 6.42377 6.47066 6.56305 6.59678 6.63940 6.68214 6.80573 6.89577 6.90797 6.94371 7.01884 7.14418 7.35465 7.40769 7.48908 7.80332 8.09893 8.18481 8.23331 8.52639 9.05667 9.61208 11.08878 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.007122 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.612088 B = 3930.455456 C = 5525.688386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.144 4.144 5 C 0.070 3.930 6 N -0.527 5.527 7 C 0.185 3.815 8 C -0.507 4.507 9 H 0.065 0.935 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.287 1.287 16 C 0.071 3.929 17 C -0.045 4.045 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.045 4.045 23 C -0.096 4.096 24 C 0.488 3.512 25 O -0.521 6.521 26 O -0.516 6.516 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.021 0.979 38 H 0.045 0.955 39 H -0.013 1.013 40 H 0.259 0.741 41 H 0.091 0.909 42 H 0.030 0.970 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.100 0.900 48 H 0.171 0.829 49 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 -0.135 -12.295 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.068 4.068 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.058 4.058 6 N -0.251 5.251 7 C 0.060 3.940 8 C -0.546 4.546 9 H 0.083 0.917 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.213 1.213 16 C -0.056 4.056 17 C -0.045 4.045 18 C -0.137 4.137 19 C -0.136 4.136 20 C -0.146 4.146 21 C -0.129 4.129 22 C -0.045 4.045 23 C -0.133 4.133 24 C 0.331 3.669 25 O -0.409 6.409 26 O -0.327 6.327 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.005 0.995 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.049 0.951 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.118 0.882 48 H 0.188 0.812 49 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.409 -0.397 -12.017 12.105 hybrid contribution 0.433 0.358 0.477 0.737 sum -0.975 -0.039 -11.540 11.581 Atomic orbital electron populations 1.21758 0.93738 1.02390 1.00486 1.20586 0.96747 0.94269 0.95153 1.21840 1.00297 0.95990 1.01420 1.22205 1.00602 1.00083 0.97169 1.22183 0.94665 0.91350 0.97637 1.62144 1.52198 1.01059 1.09743 1.19909 0.95683 0.97065 0.81329 1.21180 1.28257 1.12661 0.92477 0.91735 1.24949 0.95979 0.95344 0.98063 1.69978 1.42785 1.27754 1.12679 0.86560 0.80356 0.80650 0.80560 1.19635 1.21128 1.21314 1.21665 0.96266 0.88879 0.98835 1.19617 0.92766 0.95247 0.96909 1.20923 0.98848 0.93252 1.00679 1.20968 0.95788 0.96427 1.00382 1.20922 0.93230 0.98881 1.01526 1.20923 0.99162 0.92614 1.00241 1.18930 0.92999 0.93145 0.99462 1.20814 0.99928 1.04524 0.88060 1.23639 0.75615 0.75148 0.92468 1.90688 1.41416 1.46823 1.62002 1.84607 1.60449 1.57902 1.29774 0.92608 0.94689 0.91225 0.93358 0.93215 0.92563 0.91971 0.93737 0.93341 0.89300 0.96073 0.93669 0.99502 0.93109 0.89168 0.95146 0.86729 0.86691 0.86664 0.86603 0.88158 0.81167 0.74229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.07 37.15 0.30 -1.62 16 2 C -0.07 -1.00 0.85 -154.51 -0.13 -1.13 16 3 C -0.14 -1.80 8.38 37.16 0.31 -1.49 16 4 C -0.14 -2.00 7.22 37.16 0.27 -1.73 16 5 C 0.07 1.26 3.98 -3.82 -0.02 1.24 16 6 N -0.53 -10.18 1.33 -237.51 -0.32 -10.50 16 7 C 0.18 4.46 3.86 -4.98 -0.02 4.44 16 8 C -0.51 -13.17 8.20 -34.44 -0.28 -13.46 16 9 H 0.06 1.65 7.35 -52.49 -0.39 1.26 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 12 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.07 1.28 3.86 -4.98 -0.02 1.26 16 17 C -0.05 -0.84 3.45 -104.62 -0.36 -1.20 16 18 C -0.12 -2.09 9.67 -39.58 -0.38 -2.48 16 19 C -0.12 -1.91 10.05 -39.58 -0.40 -2.30 16 20 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 21 C -0.11 -1.88 9.67 -39.59 -0.38 -2.26 16 22 C -0.04 -0.82 3.35 -104.62 -0.35 -1.17 16 23 C -0.10 -1.62 5.31 -29.03 -0.15 -1.78 16 24 C 0.49 7.54 6.63 36.01 0.24 7.77 16 25 O -0.52 -9.17 16.05 -18.75 -0.30 -9.48 16 26 O -0.52 -6.39 12.53 -39.24 -0.49 -6.88 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.10 4.21 -51.92 -0.22 0.88 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.93 5.41 -51.93 -0.28 0.65 16 34 H 0.04 0.55 7.99 -51.93 -0.42 0.13 16 35 H 0.05 0.67 7.66 -51.93 -0.40 0.28 16 36 H 0.09 1.79 6.57 -51.93 -0.34 1.45 16 37 H 0.02 0.38 7.55 -51.93 -0.39 -0.01 16 38 H 0.05 1.18 5.52 -51.93 -0.29 0.89 16 39 H -0.01 -0.35 8.12 -51.92 -0.42 -0.77 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.09 1.56 3.33 -51.93 -0.17 1.39 16 42 H 0.03 0.55 7.51 -51.93 -0.39 0.16 16 43 H 0.11 1.84 7.95 -52.48 -0.42 1.42 16 44 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.12 1.67 8.02 -52.48 -0.42 1.25 16 47 H 0.10 1.51 7.97 -51.93 -0.41 1.09 16 48 H 0.17 3.20 3.92 -51.93 -0.20 2.99 16 49 H 0.40 3.20 9.10 45.56 0.41 3.62 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -30.28 375.43 -8.45 -38.73 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.84 Total: 8.38 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -1.87 Total: -16.84 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.42 Total: -35.48 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.79 Total: -16.36 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.28 -8.45 -38.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833430262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.887 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds