Wall clock time and date at job start Tue Mar 31 2020 12:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.53002 * 109.47172 * 239.99999 * 2 1 3 5 5 C 1.53001 * 109.47504 * 120.00025 * 2 1 3 6 6 N 1.46907 * 109.46837 * 52.30095 * 5 2 1 7 7 C 1.46904 * 110.99870 * 202.18695 * 6 5 2 8 8 C 1.50693 * 109.47372 * 66.04274 * 7 6 5 9 9 H 1.08000 * 120.00077 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99992 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00080 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99916 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47380 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47300 * 120.00011 * 12 10 8 15 15 H 1.48500 * 109.46973 * 239.99707 * 12 10 8 16 16 C 1.46895 * 111.00109 * 78.23155 * 6 5 2 17 17 C 1.50698 * 109.47286 * 167.08064 * 16 6 5 18 18 C 1.38258 * 119.99952 * 235.85319 * 17 16 6 19 19 C 1.38211 * 120.00008 * 179.74227 * 18 17 16 20 20 C 1.38262 * 119.99765 * 0.55008 * 19 18 17 21 21 C 1.38213 * 119.99939 * 359.70608 * 20 19 18 22 22 C 1.38216 * 120.00089 * 56.12589 * 17 16 6 23 23 C 1.50704 * 119.99582 * 0.02562 * 22 17 16 24 24 C 1.50699 * 109.47148 * 77.15852 * 23 22 17 25 25 O 1.20830 * 119.99667 * 359.97438 * 24 23 22 26 26 O 1.34223 * 119.99875 * 179.97438 * 24 23 22 27 27 H 1.09000 * 109.47183 * 293.07599 * 1 2 3 28 28 H 1.08996 * 109.47364 * 53.08671 * 1 2 3 29 29 H 1.09009 * 109.47075 * 173.08141 * 1 2 3 30 30 H 1.09001 * 109.47559 * 184.83213 * 3 2 1 31 31 H 1.09001 * 109.47194 * 304.83878 * 3 2 1 32 32 H 1.08999 * 109.47078 * 64.83741 * 3 2 1 33 33 H 1.08992 * 109.47592 * 319.26492 * 4 2 1 34 34 H 1.09001 * 109.47218 * 79.27028 * 4 2 1 35 35 H 1.09004 * 109.47184 * 199.26188 * 4 2 1 36 36 H 1.08997 * 109.47092 * 292.30659 * 5 2 1 37 37 H 1.08996 * 109.47494 * 172.30237 * 5 2 1 38 38 H 1.09000 * 109.47217 * 186.05104 * 7 6 5 39 39 H 1.09011 * 109.46697 * 306.04239 * 7 6 5 40 40 H 0.97001 * 120.00160 * 180.02562 * 11 10 8 41 41 H 1.09003 * 109.46647 * 287.08122 * 16 6 5 42 42 H 1.08999 * 109.47017 * 47.07830 * 16 6 5 43 43 H 1.08007 * 120.00063 * 359.97438 * 18 17 16 44 44 H 1.08004 * 120.00432 * 180.27702 * 19 18 17 45 45 H 1.08000 * 119.99747 * 179.72272 * 20 19 18 46 46 H 1.08004 * 119.99960 * 180.02562 * 21 20 19 47 47 H 1.09001 * 109.46503 * 197.15468 * 23 22 17 48 48 H 1.08998 * 109.47441 * 317.15313 * 23 22 17 49 49 H 0.96698 * 116.99857 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.4047 -2.0423 1.3456 7 6 1.4340 -2.5410 2.7271 8 6 0.5704 -1.6636 3.5962 9 1 0.0521 -0.8197 3.1656 10 6 0.4430 -1.9377 4.9414 11 7 1.0745 -2.9651 5.4659 12 14 -0.6280 -0.8505 6.0187 13 1 -1.2253 0.2297 5.1932 14 1 -1.7104 -1.6668 6.6249 15 1 0.2007 -0.2499 7.0947 16 6 2.0369 -2.9987 0.4272 17 6 1.5887 -4.3960 0.7702 18 6 2.5256 -5.3732 1.0507 19 6 2.1144 -6.6534 1.3706 20 6 0.7664 -6.9596 1.3989 21 6 -0.1700 -5.9840 1.1133 22 6 0.2412 -4.7021 0.7989 23 6 -0.7798 -3.6385 0.4866 24 6 -0.8382 -3.4203 -1.0034 25 8 -0.1236 -4.0623 -1.7364 26 8 -1.6839 -2.5129 -1.5161 27 1 -0.3633 0.4028 0.9454 28 1 -0.3634 0.6172 -0.8216 29 1 -0.3634 -1.0203 -0.1238 30 1 3.1265 1.4438 -0.0866 31 1 1.6076 1.9808 -0.8435 32 1 1.7491 1.9307 0.9301 33 1 1.4270 -1.6030 -1.4355 34 1 1.9807 -0.0500 -2.1060 35 1 3.0758 -1.0244 -1.0963 36 1 1.7934 -0.1342 2.1338 37 1 3.1213 -0.8420 1.1831 38 1 1.0556 -3.5629 2.7526 39 1 2.4589 -2.5238 3.0979 40 1 0.9845 -3.1581 6.4123 41 1 1.7464 -2.7651 -0.5971 42 1 3.1207 -2.9313 0.5218 43 1 3.5788 -5.1353 1.0236 44 1 2.8461 -7.4157 1.5941 45 1 0.4453 -7.9611 1.6444 46 1 -1.2230 -6.2231 1.1358 47 1 -1.7583 -3.9576 0.8457 48 1 -0.4977 -2.7080 0.9793 49 1 -1.6854 -2.4081 -2.4774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833430262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:58 Heat of formation + Delta-G solvation = -80.978550 kcal Electronic energy + Delta-G solvation = -29541.306765 eV Core-core repulsion = 25853.564073 eV Total energy + Delta-G solvation = -3687.742692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64245 -40.31259 -39.17354 -36.92214 -36.25693 -34.58394 -33.65860 -32.28773 -29.63444 -28.92578 -28.20491 -27.87053 -27.09688 -25.43001 -23.62273 -23.12671 -22.01485 -20.89118 -19.72109 -18.94407 -18.43855 -17.53247 -17.32221 -17.04028 -16.61395 -16.18487 -16.11594 -15.91499 -15.43083 -15.33269 -14.64024 -14.34784 -14.26314 -14.10335 -14.00179 -13.70573 -13.50887 -13.41914 -13.22982 -13.05914 -12.97255 -12.79490 -12.64769 -12.56457 -12.47364 -12.26590 -12.09362 -11.98961 -11.87436 -11.65579 -11.47389 -11.38830 -11.32742 -11.14598 -10.99227 -10.53063 -9.65083 -9.36937 -8.89464 -8.10991 -6.18277 0.49882 0.56730 1.38705 1.42468 1.44814 1.56253 2.33571 2.44842 2.97459 3.22378 3.37174 3.79996 3.90456 4.01194 4.08069 4.09705 4.20973 4.26351 4.42585 4.48398 4.55888 4.59255 4.62677 4.75616 4.78170 4.80125 4.88924 4.96305 4.99448 5.02278 5.07644 5.16221 5.20229 5.26966 5.29445 5.35101 5.37390 5.43258 5.49023 5.59975 5.64781 5.66333 5.72187 5.73737 5.79355 5.84247 6.15396 6.20726 6.41763 6.67742 6.99105 7.16834 7.49994 8.99757 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.007122 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.612088 B = 3930.455456 C = 5525.688386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.137 4.137 5 C 0.069 3.931 6 N -0.513 5.513 7 C 0.208 3.792 8 C -0.507 4.507 9 H 0.067 0.933 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.955 3.045 13 H -0.260 1.260 14 H -0.282 1.282 15 H -0.287 1.287 16 C 0.078 3.922 17 C -0.072 4.072 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.062 4.062 23 C -0.099 4.099 24 C 0.500 3.500 25 O -0.544 6.544 26 O -0.507 6.507 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.016 0.984 38 H 0.027 0.973 39 H -0.056 1.056 40 H 0.259 0.741 41 H 0.103 0.897 42 H 0.023 0.977 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.138 0.862 47 H 0.114 0.886 48 H 0.151 0.849 49 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 0.540 -13.665 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.194 4.194 5 C -0.059 4.059 6 N -0.237 5.237 7 C 0.082 3.918 8 C -0.546 4.546 9 H 0.085 0.915 10 C -0.192 4.192 11 N -0.572 5.572 12 Si 0.781 3.219 13 H -0.184 1.184 14 H -0.209 1.209 15 H -0.213 1.213 16 C -0.049 4.049 17 C -0.073 4.073 18 C -0.158 4.158 19 C -0.143 4.143 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.063 4.063 23 C -0.136 4.136 24 C 0.345 3.655 25 O -0.435 6.435 26 O -0.320 6.320 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.034 0.966 38 H 0.045 0.955 39 H -0.038 1.038 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.041 0.959 43 H 0.138 0.862 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.155 0.845 47 H 0.132 0.868 48 H 0.168 0.832 49 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -2.657 0.309 -13.426 13.690 hybrid contribution 0.827 0.137 0.852 1.195 sum -1.831 0.446 -12.574 12.714 Atomic orbital electron populations 1.21723 0.93668 1.02245 1.00455 1.20539 0.96742 0.95194 0.93721 1.21809 1.00808 0.94510 1.02034 1.22115 1.00024 0.99961 0.97318 1.22236 0.94454 0.90621 0.98608 1.62126 1.52597 1.01712 1.07219 1.19476 0.92567 0.96058 0.83695 1.21457 1.27742 1.12528 0.92863 0.91489 1.25753 0.97308 0.96587 0.99558 1.70113 1.44540 1.29616 1.12919 0.85540 0.78558 0.79106 0.78669 1.18416 1.20850 1.21343 1.21642 0.95626 0.88784 0.98850 1.19800 0.93587 0.95514 0.98369 1.21202 0.99229 0.94131 1.01240 1.21342 0.96849 0.96423 0.99641 1.21355 0.92980 1.00161 1.00291 1.21315 1.00689 0.92439 0.99969 1.19194 0.93090 0.94211 0.99788 1.20738 1.00308 1.03289 0.89274 1.23222 0.75467 0.75137 0.91723 1.90682 1.42502 1.47925 1.62363 1.84542 1.59147 1.56496 1.31829 0.94407 0.92252 0.92061 0.92761 0.90999 0.93269 0.93084 0.91296 0.93652 0.91845 0.96603 0.95540 1.03795 0.93209 0.87969 0.95853 0.86188 0.84043 0.83583 0.84452 0.86767 0.83158 0.71671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.57 8.07 71.98 0.58 -2.98 16 2 C -0.06 -1.76 0.85 -52.18 -0.04 -1.80 16 3 C -0.13 -3.24 8.38 71.98 0.60 -2.63 16 4 C -0.14 -3.57 7.22 71.98 0.52 -3.05 16 5 C 0.07 2.54 3.98 86.30 0.34 2.89 16 6 N -0.51 -20.42 1.33 -905.36 -1.20 -21.63 16 7 C 0.21 10.49 3.86 85.55 0.33 10.82 16 8 C -0.51 -27.03 8.20 25.60 0.21 -26.82 16 9 H 0.07 3.47 7.35 -2.91 -0.02 3.45 16 10 C 0.01 0.32 5.46 84.65 0.46 0.79 16 11 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 12 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 13 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 C 0.08 2.89 3.86 85.56 0.33 3.22 16 17 C -0.07 -2.77 3.45 -19.87 -0.07 -2.84 16 18 C -0.14 -5.04 9.67 22.27 0.22 -4.83 16 19 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 20 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 21 C -0.13 -4.18 9.67 22.27 0.22 -3.97 16 22 C -0.06 -2.28 3.35 -19.87 -0.07 -2.35 16 23 C -0.10 -3.31 5.31 29.10 0.15 -3.16 16 24 C 0.50 14.88 6.63 71.24 0.47 15.35 16 25 O -0.54 -18.65 16.05 21.95 0.35 -18.30 16 26 O -0.51 -11.44 12.53 -51.35 -0.64 -12.08 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.86 4.21 -2.38 -0.01 1.85 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.45 5.41 -2.39 -0.01 1.44 16 34 H 0.07 1.47 7.99 -2.39 -0.02 1.45 16 35 H 0.04 1.20 7.66 -2.38 -0.02 1.18 16 36 H 0.06 2.65 6.57 -2.39 -0.02 2.63 16 37 H 0.02 0.59 7.55 -2.39 -0.02 0.57 16 38 H 0.03 1.45 5.52 -2.39 -0.01 1.44 16 39 H -0.06 -3.23 8.12 -2.38 -0.02 -3.25 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.10 3.56 3.33 -2.39 -0.01 3.55 16 42 H 0.02 0.88 7.51 -2.39 -0.02 0.86 16 43 H 0.12 4.01 7.95 -2.91 -0.02 3.98 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.14 3.79 8.02 -2.91 -0.02 3.76 16 47 H 0.11 3.37 7.97 -2.39 -0.02 3.35 16 48 H 0.15 5.70 3.92 -2.39 -0.01 5.69 16 49 H 0.42 5.56 9.10 -74.06 -0.67 4.89 16 Total: -1.00 -66.68 375.43 5.81 -60.87 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.28 Total: 29.44 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 4.71 Total: -28.89 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -0.92 Total: -76.42 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.29 Total: -30.38 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -66.68 5.81 -60.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833430262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.105 kcal (2) G-P(sol) polarization free energy of solvation -66.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds