Wall clock time and date at job start Tue Mar 31 2020 12:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47439 * 2 1 4 4 C 1.53002 * 109.46869 * 240.00227 * 2 1 3 5 5 C 1.50702 * 109.47331 * 59.99704 * 4 2 1 6 6 H 1.08002 * 119.99477 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00249 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47048 * 90.00205 * 9 7 5 11 11 H 1.48500 * 109.46923 * 210.00296 * 9 7 5 12 12 H 1.48497 * 109.46939 * 330.00184 * 9 7 5 13 13 C 1.52997 * 109.47695 * 120.00325 * 2 1 3 14 14 N 1.46901 * 109.46930 * 294.82601 * 13 2 1 15 15 C 1.46899 * 110.99751 * 85.42494 * 14 13 2 16 16 C 1.53004 * 109.47195 * 68.09541 * 15 14 13 17 17 C 1.50701 * 109.46964 * 184.14478 * 16 15 14 18 18 O 1.20823 * 120.00479 * 0.02562 * 17 16 15 19 19 O 1.34232 * 119.99963 * 179.97438 * 17 16 15 20 20 C 1.46899 * 111.00027 * 209.37719 * 14 13 2 21 21 C 1.50699 * 109.46953 * 164.26584 * 20 14 13 22 22 C 1.38237 * 119.99947 * 95.98708 * 21 20 14 23 23 C 1.38233 * 119.99844 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00304 * 359.95510 * 23 22 21 25 25 C 1.38237 * 119.99698 * 0.27446 * 24 23 22 26 26 C 1.38233 * 120.00028 * 359.51621 * 25 24 23 27 27 H 1.09000 * 109.46764 * 314.33739 * 1 2 3 28 28 H 1.08992 * 109.47507 * 74.33976 * 1 2 3 29 29 H 1.08999 * 109.47062 * 194.34622 * 1 2 3 30 30 H 1.08996 * 109.47241 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46915 * 300.00403 * 3 2 1 32 32 H 1.09004 * 109.46877 * 60.00227 * 3 2 1 33 33 H 1.09004 * 109.47032 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.47131 * 299.99716 * 4 2 1 35 35 H 0.97005 * 120.00108 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47430 * 174.82451 * 13 2 1 37 37 H 1.09000 * 109.46860 * 54.82281 * 13 2 1 38 38 H 1.09008 * 109.46855 * 188.08952 * 15 14 13 39 39 H 1.08993 * 109.47579 * 308.09105 * 15 14 13 40 40 H 1.09001 * 109.46852 * 304.14526 * 16 15 14 41 41 H 1.09000 * 109.47263 * 64.14969 * 16 15 14 42 42 H 0.96699 * 117.00391 * 179.97438 * 19 17 16 43 43 H 1.09000 * 109.47027 * 44.26771 * 20 14 13 44 44 H 1.09005 * 109.47251 * 284.26589 * 20 14 13 45 45 H 1.07998 * 119.99831 * 359.97305 * 22 21 20 46 46 H 1.08001 * 119.99840 * 179.97438 * 23 22 21 47 47 H 1.07994 * 120.00441 * 180.02562 * 24 23 22 48 48 H 1.08005 * 120.00123 * 179.72933 * 25 24 23 49 49 H 1.08001 * 120.00007 * 180.25186 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4798 6 1 0.9169 0.8675 -2.3805 7 6 1.8709 -0.4815 -3.7320 8 7 2.6270 -1.5508 -3.8527 9 14 1.2487 0.3995 -5.2572 10 1 2.2270 1.4413 -5.6608 11 1 1.0839 -0.5793 -6.3617 12 1 -0.0595 1.0370 -4.9615 13 6 2.0401 -0.7213 1.2491 14 7 1.6551 0.0395 2.4454 15 6 0.2986 -0.3171 2.8820 16 6 0.2920 -1.7559 3.4024 17 6 -1.1175 -2.1560 3.7551 18 8 -2.0238 -1.3712 3.6052 19 8 -1.3662 -3.3847 4.2349 20 6 2.6261 -0.1578 3.5299 21 6 2.4301 0.9059 4.5792 22 6 1.6574 0.6423 5.6947 23 6 1.4781 1.6179 6.6575 24 6 2.0722 2.8567 6.5054 25 6 2.8411 3.1218 5.3876 26 6 3.0240 2.1449 4.4268 27 1 -0.3633 0.7182 0.7350 28 1 -0.3634 0.2774 -0.9894 29 1 -0.3633 -0.9956 0.2546 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7489 -1.2493 35 1 2.8613 -1.8822 -4.7338 36 1 3.1261 -0.8022 1.2039 37 1 1.6030 -1.7187 1.2966 38 1 -0.0164 0.3584 3.6775 39 1 -0.3883 -0.2321 2.0400 40 1 0.6769 -2.4230 2.6310 41 1 0.9218 -1.8244 4.2894 42 1 -2.2858 -3.5953 4.4473 43 1 3.6374 -0.0905 3.1287 44 1 2.4771 -1.1408 3.9767 45 1 1.1938 -0.3258 5.8139 46 1 0.8740 1.4120 7.5288 47 1 1.9325 3.6187 7.2577 48 1 3.3018 4.0912 5.2665 49 1 3.6280 2.3507 3.5555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833456993.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:06 Heat of formation + Delta-G solvation = -69.837258 kcal Electronic energy + Delta-G solvation = -27811.274761 eV Core-core repulsion = 24124.015191 eV Total energy + Delta-G solvation = -3687.259569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53534 -39.56039 -38.25791 -36.26857 -35.41360 -32.38536 -32.01275 -30.94686 -30.38081 -27.20561 -26.62796 -26.19263 -25.64627 -23.34375 -22.57911 -22.12881 -21.55138 -19.82921 -18.27193 -17.90677 -16.99715 -16.76784 -16.33239 -16.15640 -15.36435 -15.28094 -15.17255 -14.58126 -14.31914 -13.96696 -13.67974 -13.32423 -13.15948 -13.03851 -12.87723 -12.75620 -12.48501 -12.38946 -11.98885 -11.78218 -11.69010 -11.52072 -11.15584 -11.11384 -10.95484 -10.87286 -10.72511 -10.64209 -10.60579 -10.32798 -10.26724 -9.93561 -9.60751 -8.99771 -8.94993 -8.87254 -8.75499 -8.30072 -8.04456 -5.95069 -3.94571 1.29852 1.37783 2.10360 2.91942 3.34783 3.41387 3.44617 3.67622 4.26046 4.51075 4.69840 4.73298 4.81727 4.90880 4.96041 5.03182 5.16962 5.20839 5.37122 5.41200 5.47209 5.48975 5.55592 5.64785 5.77469 5.90676 5.97528 6.00937 6.06246 6.16661 6.24625 6.31874 6.38089 6.41586 6.46918 6.56966 6.61262 6.74202 6.82057 6.89811 6.96220 7.19026 7.21539 7.28642 7.36019 7.45303 7.71918 7.77276 7.86966 8.05479 8.50482 9.10768 9.68177 11.16586 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.003647 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.924115 B = 7676.709889 C = 9222.713389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.058 3.942 14 N -0.514 5.514 15 C 0.047 3.953 16 C -0.159 4.159 17 C 0.483 3.517 18 O -0.511 6.511 19 O -0.521 6.521 20 C 0.080 3.920 21 C -0.068 4.068 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.094 4.094 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.014 0.986 34 H 0.012 0.988 35 H 0.258 0.742 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.408 0.592 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 1.748 21.729 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.051 4.051 3 C -0.172 4.172 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.069 4.069 14 N -0.236 5.236 15 C -0.081 4.081 16 C -0.199 4.199 17 C 0.325 3.675 18 O -0.399 6.399 19 O -0.333 6.333 20 C -0.047 4.047 21 C -0.069 4.069 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.113 4.113 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.266 0.734 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.405 2.450 21.311 21.497 hybrid contribution -0.909 -0.729 -0.529 1.280 sum -2.314 1.721 20.781 20.981 Atomic orbital electron populations 1.21997 0.96138 0.99131 1.01804 1.20559 0.94762 0.96103 0.93698 1.21584 0.99371 0.95889 1.00344 1.19129 0.95991 0.94999 0.90259 1.21240 1.30670 1.11853 0.90579 0.92234 1.25002 0.95435 0.95097 0.99018 1.69963 1.37407 1.23217 1.23245 0.86682 0.79282 0.79435 0.83139 1.20797 1.21440 1.19919 1.22518 1.00112 0.94637 0.89632 1.62295 1.00696 1.56457 1.04104 1.22613 0.92449 0.90300 1.02728 1.22266 0.90780 1.02448 1.04367 1.23461 0.92469 0.78763 0.72834 1.90736 1.47283 1.52128 1.49724 1.84559 1.37033 1.34757 1.76970 1.21263 0.97335 0.94961 0.91139 1.19787 0.96970 0.95483 0.94630 1.21018 0.98893 0.99191 0.94438 1.21060 1.00139 0.93841 0.99101 1.21099 0.98237 0.96931 0.98101 1.21160 0.99139 0.99211 0.94465 1.21066 0.99227 0.92562 0.98445 0.93717 0.91434 0.94720 0.94494 0.92867 0.93502 0.96764 0.97009 0.93211 0.91340 0.94422 0.90209 0.87178 0.87168 0.87882 0.73390 0.89656 0.93710 0.86872 0.86516 0.86515 0.86261 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 6.86 37.15 0.25 -2.27 16 2 C -0.05 -0.98 0.61 -154.51 -0.09 -1.07 16 3 C -0.11 -2.16 7.96 37.16 0.30 -1.87 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.66 7.45 -34.44 -0.26 -13.92 16 6 H 0.06 1.58 5.78 -52.49 -0.30 1.28 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.06 0.91 4.06 -3.82 -0.02 0.89 16 14 N -0.51 -6.88 3.52 -236.07 -0.83 -7.71 16 15 C 0.05 0.62 4.00 -3.82 -0.02 0.61 16 16 C -0.16 -1.76 5.09 -27.88 -0.14 -1.90 16 17 C 0.48 5.74 8.33 36.01 0.30 6.04 16 18 O -0.51 -7.63 16.69 -18.75 -0.31 -7.95 16 19 O -0.52 -4.88 13.42 -39.26 -0.53 -5.41 16 20 C 0.08 0.91 4.86 -4.98 -0.02 0.88 16 21 C -0.07 -0.77 4.89 -104.62 -0.51 -1.28 16 22 C -0.12 -1.23 8.65 -39.58 -0.34 -1.57 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.13 -1.22 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 26 C -0.09 -1.07 9.73 -39.58 -0.38 -1.45 16 27 H 0.04 0.78 6.32 -51.93 -0.33 0.45 16 28 H 0.07 1.42 6.28 -51.93 -0.33 1.10 16 29 H 0.03 0.63 7.55 -51.93 -0.39 0.23 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 32 H 0.05 0.81 7.47 -51.93 -0.39 0.42 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.07 1.08 7.48 -51.93 -0.39 0.69 16 37 H 0.04 0.58 5.84 -51.93 -0.30 0.28 16 38 H 0.08 1.08 6.89 -51.92 -0.36 0.72 16 39 H 0.11 1.67 3.81 -51.93 -0.20 1.48 16 40 H 0.11 1.24 6.23 -51.93 -0.32 0.92 16 41 H 0.10 0.95 5.41 -51.93 -0.28 0.67 16 42 H 0.41 2.13 9.10 45.56 0.41 2.55 16 43 H 0.09 0.95 7.60 -51.93 -0.39 0.56 16 44 H 0.04 0.45 5.61 -51.93 -0.29 0.16 16 45 H 0.11 1.05 7.13 -52.49 -0.37 0.68 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 49 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -31.76 379.99 -9.24 -41.00 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.67 Total: 3.29 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.34 Total: -19.62 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: -0.09 Total: -33.60 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.84 Total: -13.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.76 -9.24 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833456993.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.838 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds