Wall clock time and date at job start Tue Mar 31 2020 12:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 C 1.52998 * 109.46703 * 120.00106 * 2 1 3 5 5 C 1.53004 * 109.46908 * 175.00271 * 4 2 1 6 6 N 1.46899 * 109.47035 * 179.97438 * 5 4 2 7 7 C 1.46899 * 111.00048 * 293.95359 * 6 5 4 8 8 C 1.50703 * 109.46898 * 300.14610 * 7 6 5 9 9 H 1.07996 * 120.00113 * 4.76930 * 8 7 6 10 10 C 1.37880 * 119.99717 * 184.76333 * 8 7 6 11 11 N 1.31511 * 119.99928 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99766 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47204 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47302 * 119.99754 * 12 10 8 15 15 H 1.48497 * 109.47159 * 239.99770 * 12 10 8 16 16 C 1.46900 * 110.99917 * 169.99334 * 6 5 4 17 17 C 1.50697 * 109.47564 * 199.48056 * 16 6 5 18 18 C 1.38256 * 120.00345 * 259.73485 * 17 16 6 19 19 C 1.38212 * 120.00248 * 179.74121 * 18 17 16 20 20 C 1.38250 * 119.99823 * 0.54927 * 19 18 17 21 21 C 1.38217 * 120.00251 * 359.70363 * 20 19 18 22 22 C 1.38211 * 119.99681 * 80.00030 * 17 16 6 23 23 C 1.50703 * 120.00125 * 0.02562 * 22 17 16 24 24 C 1.50697 * 109.46771 * 84.99935 * 23 22 17 25 25 O 1.20828 * 120.00438 * 359.97438 * 24 23 22 26 26 O 1.34234 * 119.99496 * 179.97438 * 24 23 22 27 27 H 1.08995 * 109.47083 * 300.00147 * 1 2 3 28 28 H 1.09001 * 109.46562 * 60.00243 * 1 2 3 29 29 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47083 * 239.99852 * 2 1 3 31 31 H 1.08997 * 109.47087 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46887 * 299.99752 * 3 2 1 33 33 H 1.08995 * 109.47269 * 59.99966 * 3 2 1 34 34 H 1.08991 * 109.47459 * 55.00117 * 4 2 1 35 35 H 1.09007 * 109.47265 * 294.99665 * 4 2 1 36 36 H 1.09004 * 109.47411 * 59.99524 * 5 4 2 37 37 H 1.08997 * 109.46716 * 299.99710 * 5 4 2 38 38 H 1.08993 * 109.47344 * 60.15502 * 7 6 5 39 39 H 1.09003 * 109.47020 * 180.15069 * 7 6 5 40 40 H 0.97003 * 119.99999 * 179.97438 * 11 10 8 41 41 H 1.08995 * 109.47686 * 319.48617 * 16 6 5 42 42 H 1.09001 * 109.46766 * 79.48350 * 16 6 5 43 43 H 1.08000 * 119.99763 * 359.97438 * 18 17 16 44 44 H 1.08002 * 120.00383 * 180.27288 * 19 18 17 45 45 H 1.08002 * 120.00423 * 179.72247 * 20 19 18 46 46 H 1.07999 * 120.00269 * 180.02562 * 21 20 19 47 47 H 1.09000 * 109.46823 * 204.99746 * 23 22 17 48 48 H 1.08999 * 109.46761 * 324.99615 * 23 22 17 49 49 H 0.96704 * 116.99922 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0545 -1.5230 2.3878 7 6 3.8099 -0.7217 3.5944 8 6 4.5215 0.6011 3.4716 9 1 5.0335 0.8559 2.5555 10 6 4.5188 1.4861 4.5289 11 7 3.8956 1.1756 5.6446 12 14 5.4002 3.1259 4.3765 13 1 6.0189 3.2322 3.0308 14 1 4.4257 4.2309 4.5624 15 1 6.4572 3.2182 5.4154 16 6 5.4789 -1.8579 2.2578 17 6 5.8301 -2.9480 3.2373 18 6 6.4582 -2.6317 4.4277 19 6 6.7755 -3.6308 5.3284 20 6 6.4750 -4.9478 5.0341 21 6 5.8518 -5.2647 3.8418 22 6 5.5292 -4.2645 2.9433 23 6 4.8504 -4.6100 1.6428 24 6 5.8868 -4.7557 0.5586 25 8 7.0565 -4.5950 0.8152 26 8 5.5104 -5.0640 -0.6925 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 3.9995 0.1675 1.1421 37 1 3.8532 -1.3940 0.3003 38 1 2.7394 -0.5495 3.7055 39 1 4.1844 -1.2560 4.4675 40 1 3.8940 1.7981 6.3886 41 1 5.6801 -2.2023 1.2435 42 1 6.0806 -0.9735 2.4673 43 1 6.6975 -1.6035 4.6554 44 1 7.2622 -3.3833 6.2602 45 1 6.7270 -5.7291 5.7359 46 1 5.6167 -6.2934 3.6120 47 1 4.3072 -5.5483 1.7547 48 1 4.1532 -3.8161 1.3749 49 1 6.2109 -5.1464 -1.3540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833482893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:02 Heat of formation + Delta-G solvation = -85.619890 kcal Electronic energy + Delta-G solvation = -28134.782118 eV Core-core repulsion = 24446.838162 eV Total energy + Delta-G solvation = -3687.943956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35687 -38.93958 -37.35242 -36.00291 -35.28804 -32.89119 -32.33266 -31.13034 -28.51895 -27.81486 -26.90254 -26.80531 -24.45254 -23.20511 -22.47853 -21.36283 -20.43084 -19.49639 -19.24317 -18.00005 -16.58525 -16.36564 -16.06387 -15.72401 -15.07469 -14.83747 -14.75406 -14.64146 -14.43767 -13.84528 -13.42826 -13.13037 -12.89358 -12.78698 -12.71144 -12.32399 -12.25239 -12.11526 -11.88935 -11.80656 -11.42333 -11.31721 -11.22399 -11.07257 -10.94373 -10.65572 -10.61548 -10.51366 -10.46196 -10.42648 -10.21954 -9.96839 -9.89812 -9.81128 -9.53788 -8.43851 -8.32467 -8.17563 -7.18457 -6.03307 -4.11383 1.72858 1.89868 2.34082 3.23213 3.24138 3.33355 3.35815 4.25289 4.39125 4.86344 4.98349 5.16846 5.26322 5.28148 5.35106 5.38959 5.42288 5.45512 5.52015 5.65086 5.79461 5.81672 5.87261 5.91935 6.00097 6.07132 6.11680 6.16890 6.19247 6.22606 6.35080 6.41375 6.48865 6.53069 6.57105 6.59384 6.60927 6.66878 6.86185 6.96874 6.97719 7.00329 7.20805 7.28707 7.49621 7.56450 7.91442 7.99132 8.04785 8.25360 8.30903 8.98839 9.54664 11.01490 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.005579 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.576799 B = 5017.342966 C = 7212.607333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.105 4.105 5 C 0.059 3.941 6 N -0.537 5.537 7 C 0.185 3.815 8 C -0.544 4.544 9 H 0.056 0.944 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.881 3.119 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.092 3.908 17 C -0.034 4.034 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.068 4.068 23 C -0.073 4.073 24 C 0.478 3.522 25 O -0.508 6.508 26 O -0.521 6.521 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.261 0.739 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.106 0.894 48 H 0.131 0.869 49 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 -10.404 -9.186 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.069 4.069 6 N -0.260 5.260 7 C 0.060 3.940 8 C -0.583 4.583 9 H 0.074 0.926 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.709 3.291 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.036 4.036 17 C -0.035 4.035 18 C -0.115 4.115 19 C -0.136 4.136 20 C -0.149 4.149 21 C -0.133 4.133 22 C -0.068 4.068 23 C -0.110 4.110 24 C 0.320 3.680 25 O -0.395 6.395 26 O -0.333 6.333 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.146 0.854 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.125 0.875 48 H 0.149 0.851 49 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.806 -10.685 -8.592 13.735 hybrid contribution 1.431 1.780 -0.355 2.311 sum 0.624 -8.905 -8.947 12.639 Atomic orbital electron populations 1.21817 0.95871 1.01203 1.01243 1.21066 0.95079 0.96477 0.98604 1.21862 1.01542 0.95973 1.00994 1.21563 0.95386 0.99895 0.97481 1.22020 0.95099 0.97896 0.91902 1.62552 1.13534 1.45445 1.04516 1.19801 0.96918 0.90228 0.87060 1.21712 1.34157 1.02776 0.99631 0.92600 1.24898 0.95298 0.97976 0.95297 1.69952 1.42655 1.36105 1.03903 0.86713 0.79691 0.84611 0.78072 1.19917 1.21003 1.21022 1.20911 0.91650 0.95716 0.95335 1.19664 0.95214 0.93282 0.95303 1.21201 0.97450 0.99754 0.93133 1.21101 1.00293 0.92976 0.99221 1.20927 1.00592 0.96343 0.97048 1.20819 0.99893 0.97969 0.94621 1.18953 1.00175 0.93332 0.94372 1.20319 0.96035 1.05886 0.88786 1.23659 0.89832 0.72060 0.82431 1.90735 1.20373 1.45924 1.82442 1.84563 1.45405 1.82726 1.20606 0.92699 0.93442 0.93043 0.92083 0.92329 0.93878 0.92417 0.92423 0.90847 0.93356 0.93751 0.95133 0.94490 0.92955 0.92921 0.92260 0.85396 0.86561 0.86749 0.86886 0.87549 0.85095 0.73694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.09 -1.31 2.92 -90.62 -0.26 -1.57 16 3 C -0.15 -2.16 8.95 37.16 0.33 -1.83 16 4 C -0.11 -1.75 4.61 -26.73 -0.12 -1.88 16 5 C 0.06 1.06 4.49 -3.82 -0.02 1.04 16 6 N -0.54 -10.65 3.96 -237.52 -0.94 -11.59 16 7 C 0.19 4.47 4.77 -4.98 -0.02 4.45 16 8 C -0.54 -14.05 7.28 -34.44 -0.25 -14.30 16 9 H 0.06 1.45 6.00 -52.49 -0.31 1.14 16 10 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 12 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.09 1.77 4.14 -4.98 -0.02 1.75 16 17 C -0.03 -0.63 4.90 -104.63 -0.51 -1.15 16 18 C -0.10 -1.83 8.84 -39.58 -0.35 -2.18 16 19 C -0.12 -1.94 10.05 -39.59 -0.40 -2.34 16 20 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16 21 C -0.11 -1.71 9.68 -39.58 -0.38 -2.10 16 22 C -0.07 -1.10 4.37 -104.62 -0.46 -1.56 16 23 C -0.07 -0.99 5.29 -29.03 -0.15 -1.15 16 24 C 0.48 6.57 7.54 36.00 0.27 6.84 16 25 O -0.51 -8.62 16.79 -18.75 -0.31 -8.93 16 26 O -0.52 -5.53 13.42 -39.27 -0.53 -6.05 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.92 6.56 -51.93 -0.34 0.58 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.43 6.56 -51.93 -0.34 1.09 16 36 H 0.05 0.97 4.61 -51.93 -0.24 0.73 16 37 H 0.04 0.72 7.83 -51.93 -0.41 0.31 16 38 H 0.03 0.80 6.48 -51.93 -0.34 0.46 16 39 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.05 0.94 6.29 -51.93 -0.33 0.62 16 42 H 0.06 1.28 6.39 -51.93 -0.33 0.95 16 43 H 0.13 2.60 8.04 -52.49 -0.42 2.17 16 44 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 45 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 46 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 47 H 0.11 1.15 8.05 -51.93 -0.42 0.73 16 48 H 0.13 1.88 6.60 -51.93 -0.34 1.53 16 49 H 0.40 2.59 9.10 45.56 0.41 3.00 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -30.33 389.67 -9.82 -40.15 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.12 Total: 7.14 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.50 Total: -18.03 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.20 Total: -36.06 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.84 Total: -14.99 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.33 -9.82 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833482893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.467 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds