Wall clock time and date at job start Tue Mar 31 2020 12:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 C 1.52998 * 109.46703 * 120.00106 * 2 1 3 5 5 C 1.53004 * 109.46908 * 175.00271 * 4 2 1 6 6 N 1.46899 * 109.47035 * 179.97438 * 5 4 2 7 7 C 1.46899 * 111.00048 * 293.95359 * 6 5 4 8 8 C 1.50703 * 109.46898 * 300.14610 * 7 6 5 9 9 H 1.07996 * 120.00113 * 4.76930 * 8 7 6 10 10 C 1.37880 * 119.99717 * 184.76333 * 8 7 6 11 11 N 1.31511 * 119.99928 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99766 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47204 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47302 * 119.99754 * 12 10 8 15 15 H 1.48497 * 109.47159 * 239.99770 * 12 10 8 16 16 C 1.46900 * 110.99917 * 169.99334 * 6 5 4 17 17 C 1.50697 * 109.47564 * 199.48056 * 16 6 5 18 18 C 1.38256 * 120.00345 * 259.73485 * 17 16 6 19 19 C 1.38212 * 120.00248 * 179.74121 * 18 17 16 20 20 C 1.38250 * 119.99823 * 0.54927 * 19 18 17 21 21 C 1.38217 * 120.00251 * 359.70363 * 20 19 18 22 22 C 1.38211 * 119.99681 * 80.00030 * 17 16 6 23 23 C 1.50703 * 120.00125 * 0.02562 * 22 17 16 24 24 C 1.50697 * 109.46771 * 84.99935 * 23 22 17 25 25 O 1.20828 * 120.00438 * 359.97438 * 24 23 22 26 26 O 1.34234 * 119.99496 * 179.97438 * 24 23 22 27 27 H 1.08995 * 109.47083 * 300.00147 * 1 2 3 28 28 H 1.09001 * 109.46562 * 60.00243 * 1 2 3 29 29 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47083 * 239.99852 * 2 1 3 31 31 H 1.08997 * 109.47087 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46887 * 299.99752 * 3 2 1 33 33 H 1.08995 * 109.47269 * 59.99966 * 3 2 1 34 34 H 1.08991 * 109.47459 * 55.00117 * 4 2 1 35 35 H 1.09007 * 109.47265 * 294.99665 * 4 2 1 36 36 H 1.09004 * 109.47411 * 59.99524 * 5 4 2 37 37 H 1.08997 * 109.46716 * 299.99710 * 5 4 2 38 38 H 1.08993 * 109.47344 * 60.15502 * 7 6 5 39 39 H 1.09003 * 109.47020 * 180.15069 * 7 6 5 40 40 H 0.97003 * 119.99999 * 179.97438 * 11 10 8 41 41 H 1.08995 * 109.47686 * 319.48617 * 16 6 5 42 42 H 1.09001 * 109.46766 * 79.48350 * 16 6 5 43 43 H 1.08000 * 119.99763 * 359.97438 * 18 17 16 44 44 H 1.08002 * 120.00383 * 180.27288 * 19 18 17 45 45 H 1.08002 * 120.00423 * 179.72247 * 20 19 18 46 46 H 1.07999 * 120.00269 * 180.02562 * 21 20 19 47 47 H 1.09000 * 109.46823 * 204.99746 * 23 22 17 48 48 H 1.08999 * 109.46761 * 324.99615 * 23 22 17 49 49 H 0.96704 * 116.99922 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0545 -1.5230 2.3878 7 6 3.8099 -0.7217 3.5944 8 6 4.5215 0.6011 3.4716 9 1 5.0335 0.8559 2.5555 10 6 4.5188 1.4861 4.5289 11 7 3.8956 1.1756 5.6446 12 14 5.4002 3.1259 4.3765 13 1 6.0189 3.2322 3.0308 14 1 4.4257 4.2309 4.5624 15 1 6.4572 3.2182 5.4154 16 6 5.4789 -1.8579 2.2578 17 6 5.8301 -2.9480 3.2373 18 6 6.4582 -2.6317 4.4277 19 6 6.7755 -3.6308 5.3284 20 6 6.4750 -4.9478 5.0341 21 6 5.8518 -5.2647 3.8418 22 6 5.5292 -4.2645 2.9433 23 6 4.8504 -4.6100 1.6428 24 6 5.8868 -4.7557 0.5586 25 8 7.0565 -4.5950 0.8152 26 8 5.5104 -5.0640 -0.6925 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 3.9995 0.1675 1.1421 37 1 3.8532 -1.3940 0.3003 38 1 2.7394 -0.5495 3.7055 39 1 4.1844 -1.2560 4.4675 40 1 3.8940 1.7981 6.3886 41 1 5.6801 -2.2023 1.2435 42 1 6.0806 -0.9735 2.4673 43 1 6.6975 -1.6035 4.6554 44 1 7.2622 -3.3833 6.2602 45 1 6.7270 -5.7291 5.7359 46 1 5.6167 -6.2934 3.6120 47 1 4.3072 -5.5483 1.7547 48 1 4.1532 -3.8161 1.3749 49 1 6.2109 -5.1464 -1.3540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833482893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:02 Heat of formation + Delta-G solvation = -102.684074 kcal Electronic energy + Delta-G solvation = -28135.522076 eV Core-core repulsion = 24446.838162 eV Total energy + Delta-G solvation = -3688.683914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47941 -40.20211 -38.81477 -36.99883 -36.65426 -34.63763 -33.84215 -32.47841 -29.96983 -29.22917 -28.49877 -27.95761 -26.12796 -24.85895 -23.62842 -22.65036 -21.76800 -20.90535 -20.62199 -19.01001 -18.50916 -17.51798 -17.29385 -16.98558 -16.70701 -16.36443 -16.19093 -15.95869 -15.83329 -15.33123 -14.74825 -14.44503 -14.27987 -14.15107 -13.93615 -13.90841 -13.62202 -13.17302 -13.10776 -13.09113 -13.02209 -12.85001 -12.72988 -12.49255 -12.42604 -12.31954 -12.05817 -12.00652 -11.80178 -11.73089 -11.62921 -11.57152 -11.38882 -11.25672 -11.20457 -10.55486 -9.62872 -9.48342 -8.96143 -8.11973 -6.28313 0.47230 0.59599 1.29725 1.30940 1.34044 1.43228 2.26677 2.36187 2.96216 3.13436 3.48443 3.72968 4.00981 4.03936 4.11513 4.15967 4.19538 4.28071 4.41191 4.43673 4.49271 4.56053 4.69539 4.71800 4.76457 4.83355 4.85762 4.89926 4.93094 4.94097 5.07150 5.13674 5.21649 5.25618 5.26986 5.27894 5.37498 5.42639 5.45842 5.58684 5.61758 5.65811 5.68655 5.70496 5.82793 5.84935 6.11940 6.21706 6.29644 6.56917 6.92314 7.08432 7.41030 8.90092 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.005579 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.576799 B = 5017.342966 C = 7212.607333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.097 4.097 5 C 0.059 3.941 6 N -0.526 5.526 7 C 0.208 3.792 8 C -0.541 4.541 9 H 0.051 0.949 10 C 0.019 3.981 11 N -0.922 5.922 12 Si 0.940 3.060 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.282 1.282 16 C 0.103 3.897 17 C -0.060 4.060 18 C -0.127 4.127 19 C -0.128 4.128 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.072 4.072 23 C -0.073 4.073 24 C 0.487 3.513 25 O -0.546 6.546 26 O -0.510 6.510 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.094 0.906 44 H 0.130 0.870 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.142 0.858 48 H 0.124 0.876 49 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 -12.525 -11.201 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.135 4.135 5 C -0.068 4.068 6 N -0.248 5.248 7 C 0.081 3.919 8 C -0.580 4.580 9 H 0.069 0.931 10 C -0.181 4.181 11 N -0.562 5.562 12 Si 0.767 3.233 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.208 1.208 16 C -0.025 4.025 17 C -0.061 4.061 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.073 4.073 23 C -0.110 4.110 24 C 0.331 3.669 25 O -0.436 6.436 26 O -0.323 6.323 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.113 0.887 44 H 0.148 0.852 45 H 0.168 0.832 46 H 0.169 0.831 47 H 0.160 0.840 48 H 0.142 0.858 49 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -1.298 -12.811 -10.650 16.711 hybrid contribution 1.593 2.351 0.211 2.848 sum 0.295 -10.460 -10.440 14.781 Atomic orbital electron populations 1.21785 0.94324 1.02117 1.01556 1.21052 0.96339 0.95583 0.97727 1.21848 1.00544 0.96778 1.01095 1.21487 0.94307 1.00264 0.97479 1.22107 0.96019 0.96806 0.91895 1.62505 1.14222 1.44319 1.03792 1.19338 0.94810 0.89703 0.88048 1.21904 1.33416 1.03426 0.99225 0.93074 1.25610 0.96136 1.01221 0.95108 1.70061 1.44206 1.37327 1.04618 0.85775 0.78649 0.80847 0.78070 1.19470 1.20460 1.20764 1.20788 0.90295 0.94906 0.96512 1.19682 0.96791 0.94389 0.95209 1.21117 0.99716 0.98976 0.94812 1.21318 1.00517 0.93526 0.99283 1.21359 0.99152 0.96139 0.97707 1.21306 0.98505 0.99425 0.93919 1.19250 0.99687 0.92417 0.95949 1.20349 0.95761 1.07381 0.87508 1.23555 0.89000 0.71133 0.83195 1.90738 1.21855 1.47836 1.83193 1.84506 1.46138 1.81816 1.19886 0.94049 0.91489 0.91854 0.89999 0.93846 0.91396 0.94641 0.91314 0.94582 0.95743 0.90989 0.97488 0.97436 0.92917 0.91391 0.95722 0.88750 0.85232 0.83180 0.83110 0.83990 0.85829 0.71334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.19 71.98 0.66 -2.55 16 2 C -0.09 -2.35 2.92 -10.79 -0.03 -2.38 16 3 C -0.15 -4.22 8.95 71.98 0.64 -3.57 16 4 C -0.10 -3.24 4.61 30.59 0.14 -3.10 16 5 C 0.06 2.16 4.49 86.30 0.39 2.55 16 6 N -0.53 -21.53 3.96 -905.37 -3.58 -25.11 16 7 C 0.21 10.62 4.77 85.56 0.41 11.03 16 8 C -0.54 -29.46 7.28 25.60 0.19 -29.28 16 9 H 0.05 2.79 6.00 -2.91 -0.02 2.78 16 10 C 0.02 1.04 5.46 84.66 0.46 1.51 16 11 N -0.92 -54.71 13.29 21.45 0.28 -54.43 16 12 Si 0.94 44.47 29.54 68.60 2.03 46.50 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 16 C 0.10 4.11 4.14 85.56 0.35 4.47 16 17 C -0.06 -2.30 4.90 -19.87 -0.10 -2.40 16 18 C -0.13 -5.13 8.84 22.27 0.20 -4.93 16 19 C -0.13 -4.28 10.05 22.27 0.22 -4.06 16 20 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 21 C -0.11 -3.08 9.68 22.27 0.22 -2.86 16 22 C -0.07 -2.26 4.37 -19.86 -0.09 -2.35 16 23 C -0.07 -1.80 5.29 29.10 0.15 -1.64 16 24 C 0.49 12.16 7.54 71.23 0.54 12.69 16 25 O -0.55 -17.71 16.79 21.96 0.37 -17.34 16 26 O -0.51 -9.08 13.42 -51.46 -0.69 -9.77 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.37 6.56 -2.39 -0.02 1.35 16 32 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.04 1.46 6.56 -2.38 -0.02 1.45 16 36 H 0.02 1.01 4.61 -2.38 -0.01 1.00 16 37 H 0.07 2.23 7.83 -2.39 -0.02 2.21 16 38 H 0.01 0.39 6.48 -2.39 -0.02 0.38 16 39 H 0.01 0.43 6.85 -2.39 -0.02 0.41 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.07 2.46 6.29 -2.39 -0.02 2.44 16 42 H 0.02 1.14 6.39 -2.39 -0.02 1.12 16 43 H 0.09 4.28 8.04 -2.91 -0.02 4.26 16 44 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 45 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 47 H 0.14 2.45 8.05 -2.39 -0.02 2.43 16 48 H 0.12 3.27 6.60 -2.39 -0.02 3.25 16 49 H 0.43 4.02 9.10 -74.05 -0.67 3.35 16 Total: -1.00 -69.59 389.67 3.26 -66.33 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.27 Total: 23.95 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 4.58 Total: -30.13 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -3.30 Total: -79.54 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.32 Total: -27.11 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.59 3.26 -66.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833482893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.354 kcal (2) G-P(sol) polarization free energy of solvation -69.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds