Wall clock time and date at job start Tue Mar 31 2020 13:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 C 1.53004 * 109.47204 * 304.99697 * 3 2 1 5 5 C 1.53004 * 109.46861 * 185.00321 * 3 2 1 6 6 O 1.42894 * 109.47400 * 65.00212 * 3 2 1 7 7 C 1.42898 * 114.00322 * 179.97438 * 6 3 2 8 8 C 1.53002 * 109.47297 * 179.97438 * 7 6 3 9 9 N 1.46503 * 109.46820 * 65.00130 * 8 7 6 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.09005 * 109.47023 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46614 * 300.00292 * 1 2 3 30 30 H 1.09002 * 109.46614 * 239.99708 * 2 1 3 31 31 H 1.08996 * 109.46931 * 119.99999 * 2 1 3 32 32 H 1.08999 * 109.47230 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47211 * 300.00335 * 4 3 2 34 34 H 1.09000 * 109.46890 * 60.00427 * 4 3 2 35 35 H 1.09000 * 109.46876 * 299.99880 * 5 3 2 36 36 H 1.08997 * 109.47444 * 59.99733 * 5 3 2 37 37 H 1.08999 * 109.46702 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.47049 * 59.99993 * 7 6 3 39 39 H 1.08999 * 109.47080 * 299.99941 * 7 6 3 40 40 H 1.08994 * 109.47287 * 305.00220 * 8 7 6 41 41 H 1.08997 * 109.47057 * 185.00071 * 8 7 6 42 42 H 0.97002 * 120.00149 * 0.02562 * 9 8 7 43 43 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 44 44 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 45 45 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 46 46 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 47 47 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 48 48 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 49 49 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1991 -1.1817 5 6 3.5649 1.4442 -0.1258 6 8 1.6621 2.0814 1.2210 7 6 2.0925 3.4401 1.3235 8 6 1.6344 4.0206 2.6630 9 7 2.3092 3.3167 3.7565 10 6 2.0593 3.6612 5.0353 11 8 1.2755 4.5535 5.2807 12 6 2.7538 2.9376 6.1599 13 6 2.3026 3.5092 7.4794 14 6 3.0390 4.4976 8.0922 15 6 2.6298 5.0203 9.3090 16 6 1.4729 4.5603 9.9193 17 6 0.7177 3.5774 9.3218 18 6 1.1236 3.0392 8.0864 19 6 0.3553 2.0291 7.4628 20 1 0.8268 1.3330 6.7850 21 6 -1.0161 1.9316 7.7238 22 7 -1.6503 2.9352 8.2735 23 14 -1.9412 0.3685 7.2874 24 1 -2.5633 0.5191 5.9475 25 1 -0.9961 -0.7769 7.2684 26 1 -2.9992 0.1206 8.2994 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7930 3.2269 -1.1814 33 1 1.7184 1.7118 -2.1130 34 1 0.3437 2.1979 -1.0921 35 1 3.9995 0.9052 0.7160 36 1 3.8532 0.9569 -1.0571 37 1 3.9282 2.4719 -0.1253 38 1 1.6593 4.0209 0.5092 39 1 3.1799 3.4825 1.2616 40 1 0.5560 3.8976 2.7626 41 1 1.8846 5.0806 2.7042 42 1 2.9364 2.6033 3.5600 43 1 3.8323 3.0608 6.0601 44 1 2.5038 1.8775 6.1191 45 1 3.9414 4.8638 7.6255 46 1 3.2163 5.7921 9.7850 47 1 1.1633 4.9750 10.8672 48 1 -0.1833 3.2209 9.7987 49 1 -2.6009 2.8674 8.4547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837280425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:45 Heat of formation + Delta-G solvation = -82.569341 kcal Electronic energy + Delta-G solvation = -27235.776261 eV Core-core repulsion = 23547.964587 eV Total energy + Delta-G solvation = -3687.811674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.59487 -38.85032 -37.23521 -35.16221 -33.51187 -33.47203 -31.64539 -30.47981 -29.43232 -29.18162 -27.71885 -26.52659 -24.90746 -23.95551 -22.25982 -20.85298 -20.43177 -19.95491 -19.19341 -17.12097 -16.73675 -16.32545 -16.07732 -15.35098 -15.27287 -14.96393 -14.70348 -14.38063 -14.17289 -13.85758 -13.64926 -13.36856 -13.28495 -12.80347 -12.51901 -12.43492 -12.35243 -12.33125 -12.11992 -11.99134 -11.67522 -11.47298 -11.42528 -11.22761 -11.04593 -11.01392 -10.94659 -10.79472 -10.61130 -10.48042 -10.32576 -9.67221 -9.39791 -9.25644 -9.04853 -8.95217 -8.49763 -7.22661 -7.21130 -6.61381 -4.21934 2.88189 3.06031 3.13453 3.17373 3.34821 3.45745 3.59302 3.86792 4.02631 4.46810 4.56954 4.71085 4.77773 5.00841 5.07101 5.11716 5.17466 5.22687 5.32985 5.37792 5.40444 5.50168 5.61535 5.71582 5.71932 5.84081 5.87958 5.91441 5.92431 6.02394 6.07488 6.13499 6.25053 6.28212 6.37383 6.47628 6.60900 6.86199 6.97036 7.15574 7.21297 7.37695 7.51302 7.73733 8.00080 8.10146 8.18715 8.21975 8.42110 8.74591 9.01304 9.10250 9.10893 10.33613 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.003673 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.294353 B = 7620.433128 C = 9216.959022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C 0.110 3.890 4 C -0.181 4.181 5 C -0.179 4.179 6 O -0.366 6.366 7 C 0.047 3.953 8 C 0.125 3.875 9 N -0.741 5.741 10 C 0.515 3.485 11 O -0.515 6.515 12 C -0.068 4.068 13 C -0.180 4.180 14 C -0.081 4.081 15 C -0.243 4.243 16 C -0.106 4.106 17 C -0.163 4.163 18 C 0.130 3.870 19 C -0.459 4.459 20 H 0.075 0.925 21 C 0.079 3.921 22 N -0.790 5.790 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.261 1.261 26 H -0.276 1.276 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.396 0.604 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -4.717 -17.745 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C 0.070 3.930 4 C -0.239 4.239 5 C -0.237 4.237 6 O -0.286 6.286 7 C -0.030 4.030 8 C 0.001 3.999 9 N -0.396 5.396 10 C 0.302 3.698 11 O -0.388 6.388 12 C -0.108 4.108 13 C -0.182 4.182 14 C -0.100 4.100 15 C -0.262 4.262 16 C -0.124 4.124 17 C -0.182 4.182 18 C 0.128 3.872 19 C -0.488 4.488 20 H 0.093 0.907 21 C -0.139 4.139 22 N -0.416 5.416 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.185 1.185 26 H -0.201 1.201 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.229 0.771 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.134 0.866 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.348 -4.057 -17.341 18.907 hybrid contribution -0.150 -0.714 -0.651 0.978 sum 6.198 -4.772 -17.992 19.619 Atomic orbital electron populations 1.21808 0.95210 1.01502 1.02596 1.21493 0.96902 0.93619 1.02481 1.21502 0.93275 0.93433 0.84764 1.22497 1.02414 1.00616 0.98324 1.22439 0.95991 1.02503 1.02737 1.88075 1.78214 1.24635 1.37638 1.22811 0.98865 0.83889 0.97432 1.21210 0.98654 0.95804 0.84207 1.46017 1.47870 1.40034 1.05705 1.21070 0.82174 0.83699 0.82848 1.90702 1.34026 1.30494 1.83595 1.20238 0.98243 1.00481 0.91851 1.18999 1.01002 1.02716 0.95485 1.20284 0.97912 0.96414 0.95342 1.20281 1.00570 1.06226 0.99153 1.20664 0.95414 0.98091 0.98272 1.21273 1.00757 1.00099 0.96088 1.17327 0.89572 0.90183 0.90119 1.19455 0.92594 1.12749 1.24027 0.90717 1.25829 0.98218 0.96570 0.93244 1.69845 1.10276 1.29093 1.32352 0.86428 0.79496 0.82647 0.78921 1.19692 1.18476 1.20121 0.92720 0.92963 0.91551 0.91009 0.90984 0.92332 0.91726 0.91179 0.91526 0.91691 0.92173 0.91986 0.92618 0.91075 0.90736 0.77090 0.90938 0.89087 0.89833 0.89764 0.89677 0.86619 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.32 37.16 0.35 -1.12 16 2 C -0.11 -0.95 5.23 -26.73 -0.14 -1.09 16 3 C 0.11 0.99 0.82 -90.62 -0.07 0.92 16 4 C -0.18 -1.42 7.76 37.16 0.29 -1.13 16 5 C -0.18 -1.36 8.25 37.16 0.31 -1.05 16 6 O -0.37 -4.33 9.47 -35.23 -0.33 -4.66 16 7 C 0.05 0.50 5.27 37.16 0.20 0.69 16 8 C 0.13 1.79 6.06 -4.04 -0.02 1.77 16 9 N -0.74 -11.80 5.50 -60.30 -0.33 -12.13 16 10 C 0.52 10.80 7.82 -10.99 -0.09 10.71 16 11 O -0.52 -13.46 16.03 5.56 0.09 -13.37 16 12 C -0.07 -1.39 5.35 -29.04 -0.16 -1.54 16 13 C -0.18 -4.47 4.43 -103.91 -0.46 -4.93 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.82 10.05 -39.29 -0.39 -6.22 16 16 C -0.11 -2.66 10.02 -39.66 -0.40 -3.05 16 17 C -0.16 -4.46 8.68 -38.87 -0.34 -4.80 16 18 C 0.13 3.58 5.56 -106.82 -0.59 2.99 16 19 C -0.46 -12.42 8.46 -37.74 -0.32 -12.74 16 20 H 0.07 1.92 6.36 -52.48 -0.33 1.58 16 21 C 0.08 2.08 5.16 -17.34 -0.09 1.99 16 22 N -0.79 -21.69 10.98 55.55 0.61 -21.08 16 23 Si 0.90 19.54 29.59 -169.99 -5.03 14.51 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H 0.05 0.47 6.35 -51.93 -0.33 0.14 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.78 7.82 -51.93 -0.41 0.38 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 38 H 0.06 0.57 6.42 -51.93 -0.33 0.23 16 39 H 0.06 0.51 6.42 -51.93 -0.33 0.18 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.40 5.19 8.47 -40.82 -0.35 4.85 16 43 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 44 H 0.09 1.79 6.48 -51.93 -0.34 1.45 16 45 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.08 1.91 8.06 -52.49 -0.42 1.49 16 48 H 0.12 3.25 6.23 -52.49 -0.33 2.92 16 49 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -32.80 390.45 -9.39 -42.19 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.96 Total: 9.59 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -2.32 Total: -20.93 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.28 Total: -33.21 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.24 Total: -18.03 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.80 -9.39 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837280425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.382 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds