Wall clock time and date at job start Tue Mar 31 2020 13:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 C 1.53004 * 109.47204 * 304.99697 * 3 2 1 5 5 C 1.53004 * 109.46861 * 185.00321 * 3 2 1 6 6 O 1.42894 * 109.47400 * 65.00212 * 3 2 1 7 7 C 1.42898 * 114.00322 * 179.97438 * 6 3 2 8 8 C 1.53002 * 109.47297 * 179.97438 * 7 6 3 9 9 N 1.46503 * 109.46820 * 65.00130 * 8 7 6 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.09005 * 109.47023 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46614 * 300.00292 * 1 2 3 30 30 H 1.09002 * 109.46614 * 239.99708 * 2 1 3 31 31 H 1.08996 * 109.46931 * 119.99999 * 2 1 3 32 32 H 1.08999 * 109.47230 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47211 * 300.00335 * 4 3 2 34 34 H 1.09000 * 109.46890 * 60.00427 * 4 3 2 35 35 H 1.09000 * 109.46876 * 299.99880 * 5 3 2 36 36 H 1.08997 * 109.47444 * 59.99733 * 5 3 2 37 37 H 1.08999 * 109.46702 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.47049 * 59.99993 * 7 6 3 39 39 H 1.08999 * 109.47080 * 299.99941 * 7 6 3 40 40 H 1.08994 * 109.47287 * 305.00220 * 8 7 6 41 41 H 1.08997 * 109.47057 * 185.00071 * 8 7 6 42 42 H 0.97002 * 120.00149 * 0.02562 * 9 8 7 43 43 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 44 44 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 45 45 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 46 46 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 47 47 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 48 48 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 49 49 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1991 -1.1817 5 6 3.5649 1.4442 -0.1258 6 8 1.6621 2.0814 1.2210 7 6 2.0925 3.4401 1.3235 8 6 1.6344 4.0206 2.6630 9 7 2.3092 3.3167 3.7565 10 6 2.0593 3.6612 5.0353 11 8 1.2755 4.5535 5.2807 12 6 2.7538 2.9376 6.1599 13 6 2.3026 3.5092 7.4794 14 6 3.0390 4.4976 8.0922 15 6 2.6298 5.0203 9.3090 16 6 1.4729 4.5603 9.9193 17 6 0.7177 3.5774 9.3218 18 6 1.1236 3.0392 8.0864 19 6 0.3553 2.0291 7.4628 20 1 0.8268 1.3330 6.7850 21 6 -1.0161 1.9316 7.7238 22 7 -1.6503 2.9352 8.2735 23 14 -1.9412 0.3685 7.2874 24 1 -2.5633 0.5191 5.9475 25 1 -0.9961 -0.7769 7.2684 26 1 -2.9992 0.1206 8.2994 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7930 3.2269 -1.1814 33 1 1.7184 1.7118 -2.1130 34 1 0.3437 2.1979 -1.0921 35 1 3.9995 0.9052 0.7160 36 1 3.8532 0.9569 -1.0571 37 1 3.9282 2.4719 -0.1253 38 1 1.6593 4.0209 0.5092 39 1 3.1799 3.4825 1.2616 40 1 0.5560 3.8976 2.7626 41 1 1.8846 5.0806 2.7042 42 1 2.9364 2.6033 3.5600 43 1 3.8323 3.0608 6.0601 44 1 2.5038 1.8775 6.1191 45 1 3.9414 4.8638 7.6255 46 1 3.2163 5.7921 9.7850 47 1 1.1633 4.9750 10.8672 48 1 -0.1833 3.2209 9.7987 49 1 -2.6009 2.8674 8.4547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837280425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:44 Heat of formation + Delta-G solvation = -102.392664 kcal Electronic energy + Delta-G solvation = -27236.635864 eV Core-core repulsion = 23547.964587 eV Total energy + Delta-G solvation = -3688.671278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.78904 -40.11041 -39.06282 -36.28286 -35.46565 -34.62322 -33.43048 -31.34710 -31.15665 -30.49281 -28.36417 -28.15130 -26.80985 -24.79194 -23.30506 -22.80630 -22.06831 -20.93102 -20.69246 -19.07241 -17.83059 -17.48974 -17.43233 -17.08268 -16.41018 -16.22589 -16.00863 -15.83350 -15.34126 -15.27889 -14.94128 -14.62091 -14.42704 -14.37360 -14.12994 -13.63177 -13.54812 -13.29191 -13.15606 -12.99507 -12.91934 -12.83823 -12.75817 -12.64007 -12.56592 -12.46240 -12.24840 -12.10580 -12.01700 -11.65834 -11.30565 -11.19369 -11.15849 -11.00851 -10.72512 -10.38948 -9.94942 -9.20583 -9.15427 -8.56589 -6.25321 1.01260 1.14666 1.34176 1.46956 1.53364 1.93215 2.20496 2.45197 2.70823 2.82359 3.76507 3.79400 3.91627 4.02558 4.13896 4.19808 4.20942 4.40172 4.41588 4.42868 4.50099 4.54543 4.63888 4.64574 4.71329 4.73503 4.74664 4.80858 4.85639 4.91562 4.95021 5.05666 5.06005 5.17460 5.19645 5.26267 5.30949 5.38156 5.38243 5.52286 5.56689 5.61901 5.80644 6.05851 6.16123 6.23387 6.39658 6.45638 6.73057 6.79660 7.01033 7.13792 7.54842 8.41100 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.003673 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.294353 B = 7620.433128 C = 9216.959022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C 0.103 3.897 4 C -0.180 4.180 5 C -0.176 4.176 6 O -0.393 6.393 7 C 0.057 3.943 8 C 0.123 3.877 9 N -0.719 5.719 10 C 0.515 3.485 11 O -0.577 6.577 12 C -0.068 4.068 13 C -0.185 4.185 14 C -0.092 4.092 15 C -0.244 4.244 16 C -0.117 4.117 17 C -0.196 4.196 18 C 0.096 3.904 19 C -0.485 4.485 20 H 0.080 0.920 21 C 0.032 3.968 22 N -0.832 5.832 23 Si 0.972 3.028 24 H -0.272 1.272 25 H -0.249 1.249 26 H -0.267 1.267 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.413 0.587 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.480 -5.528 -20.051 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C 0.064 3.936 4 C -0.237 4.237 5 C -0.233 4.233 6 O -0.314 6.314 7 C -0.019 4.019 8 C -0.001 4.001 9 N -0.373 5.373 10 C 0.303 3.697 11 O -0.455 6.455 12 C -0.107 4.107 13 C -0.187 4.187 14 C -0.110 4.110 15 C -0.263 4.263 16 C -0.135 4.135 17 C -0.216 4.216 18 C 0.094 3.906 19 C -0.515 4.515 20 H 0.098 0.902 21 C -0.182 4.182 22 N -0.458 5.458 23 Si 0.793 3.207 24 H -0.198 1.198 25 H -0.173 1.173 26 H -0.191 1.191 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.249 0.751 43 H 0.133 0.867 44 H 0.114 0.886 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.580 -4.903 -19.682 22.024 hybrid contribution -0.733 -0.395 0.033 0.833 sum 7.847 -5.298 -19.649 21.811 Atomic orbital electron populations 1.21787 0.96086 1.01546 1.01580 1.21544 0.96119 0.93884 1.03026 1.21708 0.94511 0.93256 0.84088 1.22483 1.01637 1.01018 0.98538 1.22413 0.94493 1.03038 1.03402 1.88042 1.78887 1.25049 1.39391 1.22726 1.00095 0.83769 0.95313 1.21319 0.96830 0.96377 0.85588 1.45807 1.47161 1.39731 1.04644 1.21151 0.81345 0.82878 0.84376 1.90682 1.36801 1.33359 1.84681 1.20287 1.00604 1.00187 0.89640 1.19490 0.99863 1.02382 0.96979 1.20741 0.98982 0.95899 0.95359 1.20717 1.00059 1.06273 0.99229 1.20949 0.95782 0.97620 0.99186 1.21296 1.01137 1.02033 0.97100 1.17738 0.91140 0.91116 0.90577 1.19707 0.93407 1.13458 1.24892 0.90246 1.26723 0.98944 0.99595 0.92925 1.69935 1.10767 1.31135 1.33993 0.85360 0.78296 0.78589 0.78496 1.19770 1.17253 1.19103 0.91723 0.92412 0.94530 0.88696 0.92139 0.91750 0.89987 0.92294 0.92055 0.90055 0.91573 0.90208 0.90352 0.94164 0.90352 0.75108 0.86680 0.88625 0.86398 0.86641 0.87737 0.88642 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.32 71.98 0.67 -2.12 16 2 C -0.11 -1.72 5.23 30.59 0.16 -1.56 16 3 C 0.10 1.63 0.82 -10.79 -0.01 1.63 16 4 C -0.18 -2.36 7.76 71.98 0.56 -1.80 16 5 C -0.18 -2.11 8.25 71.98 0.59 -1.52 16 6 O -0.39 -8.73 9.47 -148.98 -1.41 -10.14 16 7 C 0.06 1.10 5.27 71.98 0.38 1.48 16 8 C 0.12 3.44 6.06 86.38 0.52 3.96 16 9 N -0.72 -22.08 5.50 -463.07 -2.55 -24.63 16 10 C 0.51 21.38 7.82 87.65 0.69 22.07 16 11 O -0.58 -30.83 16.03 -3.04 -0.05 -30.88 16 12 C -0.07 -2.66 5.35 29.10 0.16 -2.51 16 13 C -0.19 -9.15 4.43 -19.40 -0.09 -9.23 16 14 C -0.09 -4.22 9.66 22.22 0.21 -4.00 16 15 C -0.24 -11.36 10.05 22.46 0.23 -11.13 16 16 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 17 C -0.20 -11.18 8.68 22.73 0.20 -10.98 16 18 C 0.10 5.45 5.56 -21.29 -0.12 5.33 16 19 C -0.48 -27.06 8.46 23.46 0.20 -26.86 16 20 H 0.08 4.17 6.36 -2.91 -0.02 4.15 16 21 C 0.03 1.72 5.16 85.26 0.44 2.16 16 22 N -0.83 -47.76 10.98 21.83 0.24 -47.52 16 23 Si 0.97 41.11 29.59 68.60 2.03 43.14 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 27 H 0.06 1.03 6.35 -2.38 -0.02 1.01 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.87 7.82 -2.39 -0.02 0.85 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 0.77 6.54 -2.39 -0.02 0.75 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.91 6.35 -2.39 -0.02 0.89 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.71 6.54 -2.39 -0.02 0.70 16 38 H 0.08 1.27 6.42 -2.39 -0.02 1.25 16 39 H 0.08 1.17 6.42 -2.39 -0.02 1.15 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.41 9.91 8.47 -92.71 -0.79 9.13 16 43 H 0.12 3.48 8.06 -2.39 -0.02 3.46 16 44 H 0.10 3.67 6.48 -2.39 -0.02 3.65 16 45 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 46 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 47 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 48 H 0.10 5.69 6.23 -2.91 -0.02 5.67 16 49 H 0.28 14.79 8.30 -92.71 -0.77 14.02 16 Total: -1.00 -75.03 390.45 3.43 -71.60 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: 0.16 Total: 39.24 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 5.01 Total: -40.81 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -2.31 Total: -72.14 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.46 Total: -41.02 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -75.03 3.43 -71.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837280425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.794 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds