Wall clock time and date at job start Tue Mar 31 2020 13:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47268 * 2 1 4 4 O 1.42904 * 109.46679 * 58.01849 * 3 2 1 5 5 C 1.52999 * 109.47653 * 178.02212 * 3 2 1 6 6 C 1.50699 * 109.46545 * 296.96758 * 5 3 2 7 7 O 1.21274 * 120.00483 * 353.48736 * 6 5 3 8 8 N 1.34786 * 119.99624 * 173.49134 * 6 5 3 9 9 C 1.46498 * 119.99819 * 174.35471 * 8 6 5 10 10 C 1.50695 * 109.47458 * 89.99941 * 9 8 6 11 11 H 1.08003 * 120.00089 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00566 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00712 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99502 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47193 * 89.99877 * 14 12 10 16 16 H 1.48495 * 109.47238 * 209.99629 * 14 12 10 17 17 H 1.48500 * 109.47324 * 329.99952 * 14 12 10 18 18 C 1.46502 * 119.99933 * 354.35066 * 8 6 5 19 19 C 1.53005 * 109.46934 * 122.20130 * 18 8 6 20 20 C 1.52994 * 109.47111 * 242.20044 * 18 8 6 21 21 C 1.50708 * 109.47165 * 298.02353 * 3 2 1 22 22 C 1.38234 * 119.99899 * 89.99305 * 21 3 2 23 23 C 1.38231 * 119.99833 * 180.02562 * 22 21 3 24 24 C 1.38239 * 120.00066 * 359.95565 * 23 22 21 25 25 C 1.38231 * 119.99947 * 0.28240 * 24 23 22 26 26 C 1.38234 * 119.99882 * 270.02083 * 21 3 2 27 27 H 1.09000 * 109.46887 * 299.99492 * 1 2 3 28 28 H 1.08993 * 109.47732 * 59.99810 * 1 2 3 29 29 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47075 * 240.00490 * 2 1 3 31 31 H 1.08993 * 109.47732 * 120.00190 * 2 1 3 32 32 H 0.96706 * 113.99740 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.46871 * 56.96656 * 5 3 2 34 34 H 1.09001 * 109.47270 * 176.97099 * 5 3 2 35 35 H 1.09004 * 109.47028 * 209.99836 * 9 8 6 36 36 H 1.08999 * 109.47191 * 329.99693 * 9 8 6 37 37 H 0.96996 * 120.00890 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47214 * 2.20758 * 18 8 6 39 39 H 1.09003 * 109.46812 * 66.03450 * 19 18 8 40 40 H 1.08992 * 109.46933 * 186.03938 * 19 18 8 41 41 H 1.09000 * 109.47135 * 306.04263 * 19 18 8 42 42 H 1.08998 * 109.47250 * 61.72160 * 20 18 8 43 43 H 1.09003 * 109.46792 * 181.71434 * 20 18 8 44 44 H 1.08992 * 109.47477 * 301.71888 * 20 18 8 45 45 H 1.08006 * 120.00007 * 0.02562 * 22 21 3 46 46 H 1.08001 * 120.00254 * 179.97438 * 23 22 21 47 47 H 1.07999 * 119.99925 * 180.02562 * 24 23 22 48 48 H 1.08001 * 120.00203 * 179.72593 * 25 24 23 49 49 H 1.08004 * 120.00031 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5259 2.1294 1.1428 5 6 3.5692 1.4429 0.0498 6 6 4.0298 0.8133 1.3391 7 8 3.2200 0.5124 2.1903 8 7 5.3419 0.5847 1.5464 9 6 5.8026 0.0883 2.8454 10 6 5.7994 -1.4186 2.8372 11 1 5.4852 -1.9532 1.9530 12 6 6.1977 -2.1150 3.9585 13 7 6.1944 -3.4301 3.9516 14 14 6.7406 -1.1905 5.4882 15 1 5.5651 -0.9457 6.3620 16 1 7.7451 -1.9989 6.2248 17 1 7.3432 0.1082 5.0939 18 6 6.3071 0.8327 0.4726 19 6 7.3533 1.8418 0.9502 20 6 6.9986 -0.4790 0.0955 21 6 1.5780 2.1387 -1.2543 22 6 0.3698 2.8101 -1.2671 23 6 -0.0541 3.4482 -2.4177 24 6 0.7306 3.4157 -3.5553 25 6 1.9366 2.7401 -3.5439 26 6 2.3624 2.1053 -2.3921 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.8088 3.0519 1.2074 33 1 3.9602 0.8729 -0.7930 34 1 3.9342 2.4685 -0.0045 35 1 6.8140 0.4485 3.0340 36 1 5.1365 0.4488 3.6292 37 1 6.4743 -3.9201 4.7406 38 1 5.7874 1.2328 -0.3980 39 1 7.9451 1.3997 1.7518 40 1 8.0073 2.1076 0.1198 41 1 6.8527 2.7369 1.3195 42 1 6.2572 -1.1876 -0.2736 43 1 7.7384 -0.2892 -0.6822 44 1 7.4929 -0.8946 0.9735 45 1 -0.2430 2.8362 -0.3781 46 1 -0.9983 3.9725 -2.4279 47 1 0.3996 3.9145 -4.4541 48 1 2.5476 2.7109 -4.4340 49 1 3.3064 1.5807 -2.3821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840307453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:49 Heat of formation + Delta-G solvation = -61.901013 kcal Electronic energy + Delta-G solvation = -28444.222473 eV Core-core repulsion = 24757.307045 eV Total energy + Delta-G solvation = -3686.915428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41230 -38.99963 -37.14872 -35.74901 -33.18441 -32.71058 -31.43776 -30.95668 -30.58414 -29.88873 -27.63623 -26.77768 -24.61971 -22.77097 -22.45509 -22.16379 -21.26585 -19.94895 -18.27788 -17.62620 -16.83849 -16.33831 -16.30377 -15.38906 -15.20993 -14.77772 -14.61397 -14.48596 -13.99319 -13.70849 -13.60340 -13.51058 -13.41889 -13.00423 -12.81672 -12.56769 -12.46467 -12.33385 -11.84523 -11.75513 -11.72071 -11.58445 -11.39176 -11.29552 -11.11802 -10.93134 -10.86595 -10.68319 -10.50255 -10.31768 -10.28850 -10.06030 -9.85190 -9.41306 -9.02183 -8.86590 -8.73615 -8.53426 -7.61781 -6.03630 -4.00357 1.20645 1.28129 3.31219 3.37018 3.39702 3.42182 3.65015 3.79972 4.38375 4.43568 4.55920 4.73962 4.86484 4.94468 4.98186 5.09038 5.15897 5.24219 5.31464 5.37295 5.46057 5.49290 5.57850 5.61080 5.64133 5.71219 5.81132 5.85641 5.92304 5.96034 6.10822 6.14542 6.22460 6.24788 6.30912 6.34045 6.38237 6.47586 6.52527 6.58130 6.71069 6.81766 6.87808 6.99406 7.02026 7.45358 7.67915 7.87006 8.35771 8.53717 9.00615 9.10918 9.57658 11.09697 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.003792 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.016781 B = 7382.392615 C = 8074.016207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.197 3.803 4 O -0.526 6.526 5 C -0.169 4.169 6 C 0.506 3.494 7 O -0.512 6.512 8 N -0.593 5.593 9 C 0.217 3.783 10 C -0.518 4.518 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.872 3.128 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.134 3.866 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.106 4.106 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.114 4.114 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.365 0.635 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 14.955 -15.380 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C 0.155 3.845 4 O -0.330 6.330 5 C -0.210 4.210 6 C 0.292 3.708 7 O -0.387 6.387 8 N -0.326 5.326 9 C 0.097 3.903 10 C -0.556 4.556 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.192 1.192 18 C 0.030 3.970 19 C -0.220 4.220 20 C -0.217 4.217 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.132 4.132 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.211 0.789 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.690 14.034 -14.671 21.377 hybrid contribution 0.767 0.852 0.511 1.255 sum -5.923 14.887 -14.160 21.382 Atomic orbital electron populations 1.21692 0.95543 1.01083 1.01786 1.21625 0.96740 0.92853 1.03803 1.19652 0.89822 0.92888 0.82093 1.86731 1.74120 1.27381 1.44731 1.22540 0.97315 1.02486 0.98644 1.20075 0.82565 0.79795 0.88362 1.90715 1.51937 1.50528 1.45515 1.48043 1.05440 1.64507 1.14570 1.19573 0.94536 0.95633 0.80577 1.21339 1.44041 0.89158 1.01080 0.90583 1.24850 0.95354 0.94701 0.98192 1.69889 1.48314 1.05947 1.29651 0.86914 0.78918 0.80110 0.84102 1.20026 1.21249 1.19199 1.21003 0.90442 0.95834 0.89761 1.22169 0.99145 0.98873 1.01832 1.22161 1.00332 0.96802 1.02359 1.20657 0.95384 0.98339 0.96314 1.21064 0.95714 0.96537 0.98472 1.21158 0.99800 0.99983 0.93298 1.21146 0.95098 0.99774 0.98240 1.21127 0.96672 0.98213 0.98009 1.21147 0.99816 0.99578 0.92670 0.91841 0.93320 0.93237 0.91717 0.88300 0.78906 0.88765 0.89300 0.95342 0.95008 0.92716 0.90723 0.91615 0.92196 0.92853 0.92659 0.93304 0.89834 0.85285 0.86249 0.86404 0.86169 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.22 37.15 0.34 -1.68 16 2 C -0.11 -1.77 4.93 -26.73 -0.13 -1.90 16 3 C 0.20 2.71 0.52 -91.77 -0.05 2.66 16 4 O -0.53 -7.82 9.74 -56.04 -0.55 -8.36 16 5 C -0.17 -2.35 2.60 -27.88 -0.07 -2.43 16 6 C 0.51 9.85 7.11 -10.98 -0.08 9.77 16 7 O -0.51 -12.16 12.86 -15.24 -0.20 -12.36 16 8 N -0.59 -11.72 2.39 -167.47 -0.40 -12.12 16 9 C 0.22 5.20 3.67 -5.20 -0.02 5.18 16 10 C -0.52 -14.49 8.34 -34.44 -0.29 -14.77 16 11 H 0.08 2.33 7.85 -52.48 -0.41 1.92 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 14 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 15 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 18 C 0.13 2.07 3.15 -67.93 -0.21 1.85 16 19 C -0.16 -2.20 8.99 37.16 0.33 -1.87 16 20 C -0.16 -2.60 8.59 37.15 0.32 -2.28 16 21 C -0.11 -1.23 4.30 -104.62 -0.45 -1.68 16 22 C -0.10 -1.08 7.56 -39.59 -0.30 -1.38 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.11 -1.19 9.14 -39.58 -0.36 -1.55 16 27 H 0.06 0.95 7.63 -51.93 -0.40 0.55 16 28 H 0.05 0.61 6.20 -51.93 -0.32 0.29 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.10 1.96 5.98 -51.93 -0.31 1.65 16 32 H 0.37 4.21 9.04 45.56 0.41 4.62 16 33 H 0.09 1.17 5.77 -51.93 -0.30 0.87 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.66 5.50 -51.93 -0.29 0.37 16 36 H 0.03 0.83 6.93 -51.93 -0.36 0.47 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 0.94 5.72 -51.93 -0.30 0.64 16 39 H 0.06 1.00 6.87 -51.93 -0.36 0.64 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.65 6.80 -51.93 -0.35 1.29 16 45 H 0.13 1.39 7.46 -52.48 -0.39 1.00 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 49 H 0.12 1.16 6.24 -52.48 -0.33 0.83 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -33.68 378.37 -8.69 -42.37 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.09 Total: 7.35 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.26 Total: -12.72 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.37 Total: -38.95 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.74 Total: -20.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.68 -8.69 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840307453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.532 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds