Wall clock time and date at job start Tue Mar 31 2020 13:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47268 * 2 1 4 4 O 1.42904 * 109.46679 * 58.01849 * 3 2 1 5 5 C 1.52999 * 109.47653 * 178.02212 * 3 2 1 6 6 C 1.50699 * 109.46545 * 296.96758 * 5 3 2 7 7 O 1.21274 * 120.00483 * 353.48736 * 6 5 3 8 8 N 1.34786 * 119.99624 * 173.49134 * 6 5 3 9 9 C 1.46498 * 119.99819 * 174.35471 * 8 6 5 10 10 C 1.50695 * 109.47458 * 89.99941 * 9 8 6 11 11 H 1.08003 * 120.00089 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00566 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00712 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99502 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47193 * 89.99877 * 14 12 10 16 16 H 1.48495 * 109.47238 * 209.99629 * 14 12 10 17 17 H 1.48500 * 109.47324 * 329.99952 * 14 12 10 18 18 C 1.46502 * 119.99933 * 354.35066 * 8 6 5 19 19 C 1.53005 * 109.46934 * 122.20130 * 18 8 6 20 20 C 1.52994 * 109.47111 * 242.20044 * 18 8 6 21 21 C 1.50708 * 109.47165 * 298.02353 * 3 2 1 22 22 C 1.38234 * 119.99899 * 89.99305 * 21 3 2 23 23 C 1.38231 * 119.99833 * 180.02562 * 22 21 3 24 24 C 1.38239 * 120.00066 * 359.95565 * 23 22 21 25 25 C 1.38231 * 119.99947 * 0.28240 * 24 23 22 26 26 C 1.38234 * 119.99882 * 270.02083 * 21 3 2 27 27 H 1.09000 * 109.46887 * 299.99492 * 1 2 3 28 28 H 1.08993 * 109.47732 * 59.99810 * 1 2 3 29 29 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47075 * 240.00490 * 2 1 3 31 31 H 1.08993 * 109.47732 * 120.00190 * 2 1 3 32 32 H 0.96706 * 113.99740 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.46871 * 56.96656 * 5 3 2 34 34 H 1.09001 * 109.47270 * 176.97099 * 5 3 2 35 35 H 1.09004 * 109.47028 * 209.99836 * 9 8 6 36 36 H 1.08999 * 109.47191 * 329.99693 * 9 8 6 37 37 H 0.96996 * 120.00890 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47214 * 2.20758 * 18 8 6 39 39 H 1.09003 * 109.46812 * 66.03450 * 19 18 8 40 40 H 1.08992 * 109.46933 * 186.03938 * 19 18 8 41 41 H 1.09000 * 109.47135 * 306.04263 * 19 18 8 42 42 H 1.08998 * 109.47250 * 61.72160 * 20 18 8 43 43 H 1.09003 * 109.46792 * 181.71434 * 20 18 8 44 44 H 1.08992 * 109.47477 * 301.71888 * 20 18 8 45 45 H 1.08006 * 120.00007 * 0.02562 * 22 21 3 46 46 H 1.08001 * 120.00254 * 179.97438 * 23 22 21 47 47 H 1.07999 * 119.99925 * 180.02562 * 24 23 22 48 48 H 1.08001 * 120.00203 * 179.72593 * 25 24 23 49 49 H 1.08004 * 120.00031 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5259 2.1294 1.1428 5 6 3.5692 1.4429 0.0498 6 6 4.0298 0.8133 1.3391 7 8 3.2200 0.5124 2.1903 8 7 5.3419 0.5847 1.5464 9 6 5.8026 0.0883 2.8454 10 6 5.7994 -1.4186 2.8372 11 1 5.4852 -1.9532 1.9530 12 6 6.1977 -2.1150 3.9585 13 7 6.1944 -3.4301 3.9516 14 14 6.7406 -1.1905 5.4882 15 1 5.5651 -0.9457 6.3620 16 1 7.7451 -1.9989 6.2248 17 1 7.3432 0.1082 5.0939 18 6 6.3071 0.8327 0.4726 19 6 7.3533 1.8418 0.9502 20 6 6.9986 -0.4790 0.0955 21 6 1.5780 2.1387 -1.2543 22 6 0.3698 2.8101 -1.2671 23 6 -0.0541 3.4482 -2.4177 24 6 0.7306 3.4157 -3.5553 25 6 1.9366 2.7401 -3.5439 26 6 2.3624 2.1053 -2.3921 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.8088 3.0519 1.2074 33 1 3.9602 0.8729 -0.7930 34 1 3.9342 2.4685 -0.0045 35 1 6.8140 0.4485 3.0340 36 1 5.1365 0.4488 3.6292 37 1 6.4743 -3.9201 4.7406 38 1 5.7874 1.2328 -0.3980 39 1 7.9451 1.3997 1.7518 40 1 8.0073 2.1076 0.1198 41 1 6.8527 2.7369 1.3195 42 1 6.2572 -1.1876 -0.2736 43 1 7.7384 -0.2892 -0.6822 44 1 7.4929 -0.8946 0.9735 45 1 -0.2430 2.8362 -0.3781 46 1 -0.9983 3.9725 -2.4279 47 1 0.3996 3.9145 -4.4541 48 1 2.5476 2.7109 -4.4340 49 1 3.3064 1.5807 -2.3821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840307453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:48 Heat of formation + Delta-G solvation = -83.021219 kcal Electronic energy + Delta-G solvation = -28445.138314 eV Core-core repulsion = 24757.307045 eV Total energy + Delta-G solvation = -3687.831269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54248 -40.21560 -38.23172 -37.20591 -34.87700 -34.26444 -32.52716 -32.42308 -31.43040 -31.07881 -29.32951 -27.98199 -25.90049 -24.12155 -23.58798 -23.24672 -22.58218 -21.01668 -19.61049 -19.03902 -18.79833 -17.62910 -17.26188 -16.74116 -16.49935 -16.11744 -15.71711 -15.59331 -15.42722 -14.97976 -14.85771 -14.62433 -14.56593 -14.40946 -14.06033 -14.02383 -13.58313 -13.57639 -13.33694 -13.26495 -12.93290 -12.80037 -12.64189 -12.52813 -12.40415 -12.33724 -12.24677 -11.95200 -11.91244 -11.82252 -11.70205 -11.52582 -11.40424 -10.90879 -10.78129 -10.33496 -9.73872 -9.60832 -9.29334 -8.29153 -6.30375 0.46255 0.56758 1.30441 1.34935 1.42137 1.93058 2.31985 2.35272 2.91941 3.04965 3.33156 3.54641 3.66971 3.94056 3.96159 4.08811 4.18614 4.23540 4.29219 4.32226 4.42480 4.45698 4.51154 4.53980 4.65264 4.72761 4.76893 4.83018 4.87688 4.93256 4.99576 5.00709 5.04842 5.06802 5.10512 5.11036 5.23011 5.35937 5.39465 5.42503 5.51323 5.60820 5.63855 5.69136 5.74701 5.78888 6.16756 6.32153 6.70174 6.84992 6.93248 7.28950 7.59334 8.87723 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.003792 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.016781 B = 7382.392615 C = 8074.016207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.203 3.797 4 O -0.548 6.548 5 C -0.156 4.156 6 C 0.496 3.504 7 O -0.565 6.565 8 N -0.600 5.600 9 C 0.229 3.771 10 C -0.513 4.513 11 H 0.032 0.968 12 C 0.008 3.992 13 N -0.948 5.948 14 Si 0.939 3.061 15 H -0.281 1.281 16 H -0.277 1.277 17 H -0.240 1.240 18 C 0.127 3.873 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.115 4.115 22 C -0.110 4.110 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.121 4.121 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.378 0.622 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.045 0.955 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.115 0.885 39 H 0.043 0.957 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.089 0.911 44 H 0.041 0.959 45 H 0.121 0.879 46 H 0.137 0.863 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 18.345 -18.059 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C 0.161 3.839 4 O -0.354 6.354 5 C -0.196 4.196 6 C 0.285 3.715 7 O -0.444 6.444 8 N -0.332 5.332 9 C 0.106 3.894 10 C -0.552 4.552 11 H 0.050 0.950 12 C -0.189 4.189 13 N -0.589 5.589 14 Si 0.763 3.237 15 H -0.207 1.207 16 H -0.203 1.203 17 H -0.163 1.163 18 C 0.024 3.976 19 C -0.215 4.215 20 C -0.211 4.211 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.139 4.139 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.225 0.775 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.108 0.892 44 H 0.060 0.940 45 H 0.139 0.861 46 H 0.155 0.845 47 H 0.160 0.840 48 H 0.162 0.838 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.905 17.462 -17.395 25.345 hybrid contribution 0.464 -0.251 1.218 1.327 sum -5.441 17.212 -16.177 24.239 Atomic orbital electron populations 1.21602 0.94568 1.01152 1.01875 1.21586 0.97724 0.94400 1.01712 1.19510 0.89492 0.91779 0.83099 1.86702 1.74513 1.28497 1.45677 1.22536 0.97591 1.03873 0.95552 1.21096 0.81831 0.78873 0.89703 1.90694 1.53286 1.52608 1.47777 1.48173 1.06739 1.64090 1.14196 1.19165 0.94767 0.92676 0.82756 1.21528 1.42742 0.91460 0.99445 0.94968 1.25775 0.95722 0.95532 1.01855 1.70044 1.50170 1.07857 1.30833 0.85839 0.78444 0.79961 0.79459 1.20653 1.20264 1.16286 1.21404 0.90516 0.95896 0.89767 1.22136 0.98692 0.98093 1.02544 1.22095 1.00488 0.96864 1.01696 1.20350 0.96257 0.99412 0.95489 1.21076 0.95603 0.97181 0.98957 1.21405 1.00652 0.99624 0.92923 1.21505 0.94731 0.99090 0.98822 1.21437 0.96990 0.97361 0.98327 1.21311 1.00175 0.99853 0.92575 0.93316 0.91487 0.93203 0.90725 0.93320 0.77467 0.86699 0.85983 0.93737 0.97266 0.92614 0.86700 0.93823 0.88477 0.92030 0.94872 0.89191 0.93951 0.86095 0.84486 0.83965 0.83829 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.22 71.98 0.66 -3.21 16 2 C -0.12 -3.77 4.93 30.59 0.15 -3.62 16 3 C 0.20 5.45 0.52 -11.54 -0.01 5.44 16 4 O -0.55 -16.49 9.74 -129.09 -1.26 -17.75 16 5 C -0.16 -4.05 2.60 29.85 0.08 -3.97 16 6 C 0.50 19.51 7.11 87.66 0.62 20.13 16 7 O -0.57 -28.21 12.86 16.88 0.22 -27.99 16 8 N -0.60 -23.70 2.39 -802.14 -1.92 -25.62 16 9 C 0.23 11.18 3.67 85.63 0.31 11.49 16 10 C -0.51 -30.15 8.34 25.60 0.21 -29.93 16 11 H 0.03 2.12 7.85 -2.91 -0.02 2.09 16 12 C 0.01 0.50 5.47 84.66 0.46 0.96 16 13 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 14 Si 0.94 45.61 27.47 68.60 1.88 47.50 16 15 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 18 C 0.13 3.62 3.15 44.99 0.14 3.76 16 19 C -0.16 -3.72 8.99 71.98 0.65 -3.07 16 20 C -0.15 -4.92 8.59 71.98 0.62 -4.30 16 21 C -0.11 -2.40 4.30 -19.86 -0.09 -2.49 16 22 C -0.11 -2.17 7.56 22.27 0.17 -2.01 16 23 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 24 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 25 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.12 -2.11 9.14 22.27 0.20 -1.90 16 27 H 0.05 1.52 7.63 -2.39 -0.02 1.50 16 28 H 0.07 1.66 6.20 -2.39 -0.01 1.64 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.05 2.07 5.98 -2.39 -0.01 2.06 16 32 H 0.38 8.58 9.04 -74.05 -0.67 7.91 16 33 H 0.12 2.52 5.77 -2.39 -0.01 2.50 16 34 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.04 2.04 5.50 -2.38 -0.01 2.02 16 36 H 0.01 0.50 6.93 -2.39 -0.02 0.48 16 37 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 38 H 0.12 2.39 5.72 -2.39 -0.01 2.37 16 39 H 0.04 1.23 6.87 -2.39 -0.02 1.21 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.04 1.70 6.80 -2.39 -0.02 1.68 16 45 H 0.12 2.53 7.46 -2.91 -0.02 2.51 16 46 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 47 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 48 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.13 1.97 6.24 -2.91 -0.02 1.95 16 Total: -1.00 -80.20 378.37 4.31 -75.88 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.22 Total: 26.13 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 4.87 Total: -17.55 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.62 Total: -86.22 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.04 Total: -45.74 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.50 kcal Total: -80.20 4.31 -75.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840307453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.138 kcal (2) G-P(sol) polarization free energy of solvation -80.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds