Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46805 * 2 1 4 4 C 1.53001 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47294 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.46930 * 179.97438 * 5 4 3 7 7 O 1.42907 * 109.46722 * 179.97438 * 6 5 4 8 8 C 1.42904 * 113.99746 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47438 * 330.00958 * 8 7 6 10 10 C 1.53001 * 109.46747 * 90.00136 * 8 7 6 11 11 C 1.50697 * 109.47237 * 209.99899 * 8 7 6 12 12 O 1.21277 * 120.00010 * 349.59343 * 11 8 7 13 13 N 1.34779 * 119.99916 * 169.58601 * 11 8 7 14 14 C 1.37140 * 119.99945 * 5.48034 * 13 11 8 15 15 H 1.08002 * 120.00046 * 304.06690 * 14 13 11 16 16 C 1.38892 * 120.00022 * 124.07047 * 14 13 11 17 17 N 1.31427 * 119.99886 * 160.46322 * 16 14 13 18 18 Si 1.86801 * 119.99959 * 340.46879 * 16 14 13 19 19 H 1.48500 * 109.46869 * 92.05061 * 18 16 14 20 20 H 1.48497 * 109.46817 * 212.04630 * 18 16 14 21 21 H 1.48496 * 109.47142 * 332.04840 * 18 16 14 22 22 C 1.39792 * 120.00002 * 185.47153 * 13 11 8 23 23 C 1.38965 * 120.07396 * 6.05279 * 22 13 11 24 24 C 1.38082 * 119.91451 * 179.73880 * 23 22 13 25 25 C 1.38302 * 120.08238 * 0.53238 * 24 23 22 26 26 C 1.38310 * 120.15415 * 359.71859 * 25 24 23 27 27 C 1.38086 * 120.07959 * 0.02764 * 26 25 24 28 28 H 1.08998 * 109.47516 * 59.99819 * 1 2 3 29 29 H 1.09003 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47116 * 299.99460 * 1 2 3 31 31 H 1.09005 * 109.46643 * 240.00604 * 2 1 3 32 32 H 1.08998 * 109.47516 * 120.00181 * 2 1 3 33 33 H 1.08996 * 109.47529 * 60.00194 * 3 2 1 34 34 H 1.09001 * 109.47291 * 299.99841 * 3 2 1 35 35 H 1.08996 * 109.47289 * 59.99428 * 4 3 2 36 36 H 1.09008 * 109.46696 * 299.99447 * 4 3 2 37 37 H 1.09000 * 109.46949 * 59.99555 * 5 4 3 38 38 H 1.08998 * 109.46907 * 299.99671 * 5 4 3 39 39 H 1.09000 * 109.47377 * 60.00173 * 6 5 4 40 40 H 1.08998 * 109.47348 * 299.99758 * 6 5 4 41 41 H 1.09003 * 109.47002 * 176.66186 * 10 8 7 42 42 H 1.08995 * 109.47620 * 296.66824 * 10 8 7 43 43 H 1.09007 * 109.47123 * 56.66602 * 10 8 7 44 44 H 0.96996 * 119.99996 * 180.02562 * 17 16 14 45 45 H 1.08002 * 120.04054 * 359.97438 * 23 22 13 46 46 H 1.07999 * 119.95702 * 180.25133 * 24 23 22 47 47 H 1.07999 * 119.92767 * 179.69945 * 25 24 23 48 48 H 1.08004 * 119.96119 * 179.97438 * 26 25 24 49 49 H 1.07995 * 120.03888 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 8 6.0862 4.2324 0.0000 8 6 7.5107 4.3453 0.0006 9 1 7.9431 3.4868 0.5146 10 6 8.0197 4.3854 -1.4417 11 6 7.9141 5.6117 0.7109 12 8 7.0744 6.4362 1.0042 13 7 9.2079 5.8279 1.0205 14 6 10.1713 4.9514 0.5912 15 1 10.0961 3.9027 0.8383 16 6 11.2439 5.4124 -0.1612 17 7 12.3411 4.6943 -0.2500 18 14 11.1271 7.0530 -1.0468 19 1 11.6571 8.1277 -0.1697 20 1 11.9241 6.9975 -2.2986 21 1 9.7074 7.3377 -1.3760 22 6 9.5677 6.9456 1.7790 23 6 8.5850 7.7654 2.3206 24 6 8.9441 8.8656 3.0738 25 6 10.2799 9.1583 3.2802 26 6 11.2607 8.3475 2.7382 27 6 10.9089 7.2427 1.9883 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9336 0.9287 0.8892 37 1 3.7169 3.3984 0.8904 38 1 3.7162 3.3994 -0.8895 39 1 5.9733 2.3717 -0.8902 40 1 5.9732 2.3709 0.8897 41 1 9.0999 4.5310 -1.4419 42 1 7.7796 3.4451 -1.9381 43 1 7.5420 5.2088 -1.9728 44 1 13.0904 5.0164 -0.7751 45 1 7.5417 7.5401 2.1558 46 1 8.1809 9.5008 3.4985 47 1 10.5580 10.0222 3.8656 48 1 12.3029 8.5793 2.9010 49 1 11.6752 6.6103 1.5651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841087992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = -58.201269 kcal Electronic energy + Delta-G solvation = -27054.881880 eV Core-core repulsion = 23368.126885 eV Total energy + Delta-G solvation = -3686.754995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16211 -38.21537 -37.15344 -36.19550 -35.17996 -33.03942 -32.33012 -30.97501 -30.04510 -28.73401 -28.00647 -25.44112 -24.25261 -23.39916 -21.87262 -21.24899 -21.23657 -21.00884 -19.41772 -18.18173 -16.69862 -16.26960 -15.85127 -15.83300 -15.48238 -15.18623 -14.67264 -14.42130 -14.08805 -13.88915 -13.71212 -13.43143 -13.24337 -13.08224 -12.88829 -12.64359 -12.56859 -12.23125 -12.15394 -12.03627 -11.69487 -11.50296 -11.46679 -11.26778 -11.12116 -11.05104 -10.92272 -10.83703 -10.68770 -10.59159 -10.49082 -10.27982 -10.07529 -9.58725 -9.29896 -8.89154 -8.30961 -8.05394 -7.04075 -6.67386 -4.55315 2.07288 2.21396 3.07036 3.17675 3.27512 3.49309 3.54120 4.02184 4.37253 4.55247 4.70004 4.76085 4.79825 4.84464 4.99313 5.18960 5.30198 5.32415 5.43323 5.53421 5.55609 5.60577 5.62330 5.63947 5.66913 5.75543 5.77959 5.80386 5.82967 5.91036 5.92211 5.98408 6.08564 6.23805 6.24758 6.30144 6.33673 6.36772 6.42490 6.57808 6.83771 6.86402 7.17031 7.24192 7.31563 7.39336 7.56377 7.69016 7.94697 8.15592 8.71766 9.03263 9.33322 10.34872 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.002886 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.828127 B = 9699.898096 C =10737.226241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.117 4.117 6 C 0.061 3.939 7 O -0.367 6.367 8 C 0.094 3.906 9 H 0.085 0.915 10 C -0.168 4.168 11 C 0.501 3.499 12 O -0.539 6.539 13 N -0.408 5.408 14 C -0.375 4.375 15 H 0.107 0.893 16 C 0.091 3.909 17 N -0.845 5.845 18 Si 0.853 3.147 19 H -0.252 1.252 20 H -0.281 1.281 21 H -0.259 1.259 22 C 0.160 3.840 23 C -0.183 4.183 24 C -0.111 4.111 25 C -0.169 4.169 26 C -0.109 4.109 27 C -0.149 4.149 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.280 0.720 45 H 0.174 0.826 46 H 0.112 0.888 47 H 0.108 0.892 48 H 0.112 0.888 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -5.164 -0.017 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.016 4.016 7 O -0.286 6.286 8 C 0.034 3.966 9 H 0.103 0.897 10 C -0.226 4.226 11 C 0.292 3.708 12 O -0.420 6.420 13 N -0.119 5.119 14 C -0.501 4.501 15 H 0.124 0.876 16 C -0.120 4.120 17 N -0.477 5.477 18 Si 0.677 3.323 19 H -0.177 1.177 20 H -0.207 1.207 21 H -0.183 1.183 22 C 0.064 3.936 23 C -0.203 4.203 24 C -0.130 4.130 25 C -0.188 4.188 26 C -0.128 4.128 27 C -0.170 4.170 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.191 0.809 46 H 0.130 0.870 47 H 0.126 0.874 48 H 0.130 0.870 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.090 -4.733 -0.015 12.984 hybrid contribution 0.597 0.488 -0.522 0.931 sum -11.493 -4.245 -0.537 12.264 Atomic orbital electron populations 1.21783 0.96044 1.01426 1.01815 1.21545 0.95726 0.97086 1.01981 1.21608 0.95239 0.96597 1.02269 1.21523 0.95448 0.96295 1.02223 1.21499 0.93790 0.96785 1.03385 1.22534 0.94778 0.84396 0.99935 1.87964 1.20144 1.25363 1.95087 1.21565 0.81087 0.96722 0.97266 0.89745 1.22232 1.04724 1.01508 0.94113 1.20729 0.82638 0.88045 0.79341 1.90260 1.51827 1.45835 1.54073 1.41258 1.06054 1.21330 1.43248 1.18878 1.03042 0.92153 1.36015 0.87554 1.25426 0.94340 0.97687 0.94558 1.69765 1.02598 1.38934 1.36437 0.87271 0.80322 0.84605 0.80150 1.17668 1.20724 1.18320 1.18488 0.93321 0.89355 0.92469 1.22629 1.02859 0.95577 0.99237 1.20974 0.95534 0.97487 0.98957 1.20910 0.93410 1.00818 1.03698 1.20827 0.98604 0.95154 0.98206 1.21271 0.95665 0.98528 1.01504 0.92786 0.92937 0.92773 0.92087 0.92065 0.91887 0.91928 0.91856 0.91846 0.91131 0.91209 0.93479 0.93590 0.88189 0.92588 0.92572 0.90923 0.80931 0.87012 0.87431 0.86952 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 4 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 5 C -0.12 -1.40 5.58 -26.73 -0.15 -1.55 16 6 C 0.06 0.86 5.75 37.16 0.21 1.08 16 7 O -0.37 -6.95 9.54 -54.92 -0.52 -7.48 16 8 C 0.09 1.87 2.44 -27.88 -0.07 1.81 16 9 H 0.08 1.59 7.20 -51.93 -0.37 1.22 16 10 C -0.17 -3.16 9.38 37.16 0.35 -2.81 16 11 C 0.50 11.77 6.94 -10.99 -0.08 11.69 16 12 O -0.54 -13.48 13.00 -14.13 -0.18 -13.66 16 13 N -0.41 -9.87 2.05 -58.98 -0.12 -9.99 16 14 C -0.37 -9.21 6.36 -14.93 -0.09 -9.30 16 15 H 0.11 2.69 7.60 -52.49 -0.40 2.30 16 16 C 0.09 2.25 3.29 -17.48 -0.06 2.19 16 17 N -0.85 -21.60 13.96 55.49 0.77 -20.82 16 18 Si 0.85 20.07 25.07 -169.99 -4.26 15.81 16 19 H -0.25 -5.90 6.24 56.52 0.35 -5.55 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.16 3.82 5.34 -83.69 -0.45 3.38 16 23 C -0.18 -4.12 9.00 -39.37 -0.35 -4.47 16 24 C -0.11 -2.14 10.04 -39.61 -0.40 -2.54 16 25 C -0.17 -3.10 10.04 -39.53 -0.40 -3.50 16 26 C -0.11 -2.17 10.04 -39.61 -0.40 -2.56 16 27 C -0.15 -3.42 6.37 -39.37 -0.25 -3.67 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.61 7.95 -51.93 -0.41 0.20 16 40 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.10 2.07 5.61 -51.93 -0.29 1.78 16 42 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.28 6.72 8.31 -40.82 -0.34 6.39 16 45 H 0.17 4.06 4.65 -55.60 -0.26 3.80 16 46 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 48 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 49 H 0.14 3.43 4.90 -52.49 -0.26 3.17 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -27.85 385.02 -9.06 -36.91 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -8.35 Total: 7.88 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.20 Total: -14.45 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.65 Total: -30.82 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.71 Total: -21.14 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.26 Total: 15.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.85 -9.06 -36.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841087992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.291 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds