Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46805 * 2 1 4 4 C 1.53001 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47294 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.46930 * 179.97438 * 5 4 3 7 7 O 1.42907 * 109.46722 * 179.97438 * 6 5 4 8 8 C 1.42904 * 113.99746 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47438 * 330.00958 * 8 7 6 10 10 C 1.53001 * 109.46747 * 90.00136 * 8 7 6 11 11 C 1.50697 * 109.47237 * 209.99899 * 8 7 6 12 12 O 1.21277 * 120.00010 * 349.59343 * 11 8 7 13 13 N 1.34779 * 119.99916 * 169.58601 * 11 8 7 14 14 C 1.37140 * 119.99945 * 5.48034 * 13 11 8 15 15 H 1.08002 * 120.00046 * 304.06690 * 14 13 11 16 16 C 1.38892 * 120.00022 * 124.07047 * 14 13 11 17 17 N 1.31427 * 119.99886 * 160.46322 * 16 14 13 18 18 Si 1.86801 * 119.99959 * 340.46879 * 16 14 13 19 19 H 1.48500 * 109.46869 * 92.05061 * 18 16 14 20 20 H 1.48497 * 109.46817 * 212.04630 * 18 16 14 21 21 H 1.48496 * 109.47142 * 332.04840 * 18 16 14 22 22 C 1.39792 * 120.00002 * 185.47153 * 13 11 8 23 23 C 1.38965 * 120.07396 * 6.05279 * 22 13 11 24 24 C 1.38082 * 119.91451 * 179.73880 * 23 22 13 25 25 C 1.38302 * 120.08238 * 0.53238 * 24 23 22 26 26 C 1.38310 * 120.15415 * 359.71859 * 25 24 23 27 27 C 1.38086 * 120.07959 * 0.02764 * 26 25 24 28 28 H 1.08998 * 109.47516 * 59.99819 * 1 2 3 29 29 H 1.09003 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47116 * 299.99460 * 1 2 3 31 31 H 1.09005 * 109.46643 * 240.00604 * 2 1 3 32 32 H 1.08998 * 109.47516 * 120.00181 * 2 1 3 33 33 H 1.08996 * 109.47529 * 60.00194 * 3 2 1 34 34 H 1.09001 * 109.47291 * 299.99841 * 3 2 1 35 35 H 1.08996 * 109.47289 * 59.99428 * 4 3 2 36 36 H 1.09008 * 109.46696 * 299.99447 * 4 3 2 37 37 H 1.09000 * 109.46949 * 59.99555 * 5 4 3 38 38 H 1.08998 * 109.46907 * 299.99671 * 5 4 3 39 39 H 1.09000 * 109.47377 * 60.00173 * 6 5 4 40 40 H 1.08998 * 109.47348 * 299.99758 * 6 5 4 41 41 H 1.09003 * 109.47002 * 176.66186 * 10 8 7 42 42 H 1.08995 * 109.47620 * 296.66824 * 10 8 7 43 43 H 1.09007 * 109.47123 * 56.66602 * 10 8 7 44 44 H 0.96996 * 119.99996 * 180.02562 * 17 16 14 45 45 H 1.08002 * 120.04054 * 359.97438 * 23 22 13 46 46 H 1.07999 * 119.95702 * 180.25133 * 24 23 22 47 47 H 1.07999 * 119.92767 * 179.69945 * 25 24 23 48 48 H 1.08004 * 119.96119 * 179.97438 * 26 25 24 49 49 H 1.07995 * 120.03888 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 8 6.0862 4.2324 0.0000 8 6 7.5107 4.3453 0.0006 9 1 7.9431 3.4868 0.5146 10 6 8.0197 4.3854 -1.4417 11 6 7.9141 5.6117 0.7109 12 8 7.0744 6.4362 1.0042 13 7 9.2079 5.8279 1.0205 14 6 10.1713 4.9514 0.5912 15 1 10.0961 3.9027 0.8383 16 6 11.2439 5.4124 -0.1612 17 7 12.3411 4.6943 -0.2500 18 14 11.1271 7.0530 -1.0468 19 1 11.6571 8.1277 -0.1697 20 1 11.9241 6.9975 -2.2986 21 1 9.7074 7.3377 -1.3760 22 6 9.5677 6.9456 1.7790 23 6 8.5850 7.7654 2.3206 24 6 8.9441 8.8656 3.0738 25 6 10.2799 9.1583 3.2802 26 6 11.2607 8.3475 2.7382 27 6 10.9089 7.2427 1.9883 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9336 0.9287 0.8892 37 1 3.7169 3.3984 0.8904 38 1 3.7162 3.3994 -0.8895 39 1 5.9733 2.3717 -0.8902 40 1 5.9732 2.3709 0.8897 41 1 9.0999 4.5310 -1.4419 42 1 7.7796 3.4451 -1.9381 43 1 7.5420 5.2088 -1.9728 44 1 13.0904 5.0164 -0.7751 45 1 7.5417 7.5401 2.1558 46 1 8.1809 9.5008 3.4985 47 1 10.5580 10.0222 3.8656 48 1 12.3029 8.5793 2.9010 49 1 11.6752 6.6103 1.5651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841087992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = -70.522563 kcal Electronic energy + Delta-G solvation = -27055.416171 eV Core-core repulsion = 23368.126885 eV Total energy + Delta-G solvation = -3687.289286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90575 -39.71170 -38.60786 -37.07633 -36.99621 -34.24149 -33.97977 -32.36950 -31.67504 -30.30173 -28.94730 -27.30530 -25.57992 -24.57698 -23.48331 -22.73406 -22.16007 -21.83605 -21.20093 -19.91885 -18.32605 -17.69935 -17.46044 -17.10428 -16.95616 -16.37098 -16.32038 -15.93864 -15.63946 -15.00209 -14.95607 -14.89797 -14.60317 -14.49828 -14.20799 -14.02298 -13.89047 -13.83928 -13.57359 -13.15952 -13.10979 -13.01070 -12.81124 -12.53726 -12.46276 -12.37113 -12.17739 -12.05484 -11.78881 -11.73859 -11.69626 -11.44644 -11.36075 -11.34671 -10.76211 -10.70050 -10.04705 -9.69291 -8.83101 -8.57660 -6.48846 0.42542 0.57060 1.18313 1.26195 1.35622 1.73364 2.00596 2.12332 2.66156 3.00856 3.09109 3.75096 3.92313 3.95344 4.02430 4.12679 4.15196 4.19248 4.21156 4.23655 4.39328 4.45359 4.46597 4.52830 4.59888 4.68771 4.75214 4.79290 4.80836 4.84725 4.88075 4.90053 4.94276 5.08192 5.10303 5.21293 5.23701 5.25043 5.30807 5.37795 5.45861 5.47788 5.53031 5.60355 5.67845 5.73180 5.97061 6.01794 6.18481 6.39860 6.81442 7.19015 7.50329 8.44539 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.002886 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.828127 B = 9699.898096 C =10737.226241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.110 4.110 5 C -0.112 4.112 6 C 0.052 3.948 7 O -0.388 6.388 8 C 0.100 3.900 9 H 0.092 0.908 10 C -0.161 4.161 11 C 0.488 3.512 12 O -0.563 6.563 13 N -0.417 5.417 14 C -0.367 4.367 15 H 0.093 0.907 16 C 0.078 3.922 17 N -0.871 5.871 18 Si 0.888 3.112 19 H -0.249 1.249 20 H -0.271 1.271 21 H -0.283 1.283 22 C 0.127 3.873 23 C -0.204 4.204 24 C -0.106 4.106 25 C -0.154 4.154 26 C -0.110 4.110 27 C -0.171 4.171 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.286 0.714 45 H 0.159 0.841 46 H 0.146 0.854 47 H 0.154 0.846 48 H 0.142 0.858 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 -4.573 0.481 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.024 4.024 7 O -0.307 6.307 8 C 0.040 3.960 9 H 0.110 0.890 10 C -0.218 4.218 11 C 0.280 3.720 12 O -0.446 6.446 13 N -0.128 5.128 14 C -0.493 4.493 15 H 0.110 0.890 16 C -0.131 4.131 17 N -0.504 5.504 18 Si 0.713 3.287 19 H -0.173 1.173 20 H -0.196 1.196 21 H -0.209 1.209 22 C 0.032 3.968 23 C -0.224 4.224 24 C -0.124 4.124 25 C -0.173 4.173 26 C -0.128 4.128 27 C -0.192 4.192 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.175 0.825 46 H 0.164 0.836 47 H 0.171 0.829 48 H 0.160 0.840 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.287 -4.145 0.487 12.977 hybrid contribution 0.612 0.356 -0.570 0.909 sum -11.675 -3.789 -0.082 12.275 Atomic orbital electron populations 1.21788 0.95561 1.01939 1.01832 1.21534 0.96170 0.96275 1.02245 1.21591 0.94483 0.97373 1.02125 1.21483 0.96053 0.94406 1.02846 1.21493 0.92191 0.98506 1.02730 1.22857 0.96107 0.82485 1.01000 1.87943 1.19225 1.28319 1.95210 1.21468 0.82048 0.95094 0.97422 0.89048 1.22148 1.03040 1.02980 0.93647 1.21400 0.82296 0.89099 0.79206 1.90241 1.52244 1.46949 1.55129 1.41357 1.06194 1.21625 1.43659 1.18709 1.03150 0.91712 1.35715 0.88994 1.25610 0.94114 0.98737 0.94655 1.69777 1.03164 1.39951 1.37522 0.86750 0.78720 0.83317 0.79944 1.17302 1.19636 1.20887 1.18804 0.94287 0.89911 0.93831 1.22633 1.01973 0.97051 1.00720 1.21383 0.97243 0.96370 0.97420 1.21390 0.92369 1.01215 1.02307 1.21249 1.00737 0.93972 0.96869 1.21280 0.94741 0.99948 1.03226 0.92707 0.92198 0.92858 0.91703 0.91924 0.92247 0.91929 0.90955 0.91471 0.92217 0.91474 0.91799 0.93040 0.90289 0.89281 0.93339 0.90342 0.82456 0.83615 0.82865 0.84015 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.69 5.93 30.59 0.18 -1.51 16 3 C -0.12 -1.87 5.21 30.59 0.16 -1.71 16 4 C -0.11 -1.94 5.21 30.60 0.16 -1.78 16 5 C -0.11 -2.61 5.58 30.59 0.17 -2.44 16 6 C 0.05 1.44 5.75 71.98 0.41 1.85 16 7 O -0.39 -14.81 9.54 -130.15 -1.24 -16.05 16 8 C 0.10 4.06 2.44 29.85 0.07 4.14 16 9 H 0.09 3.51 7.20 -2.39 -0.02 3.49 16 10 C -0.16 -6.06 9.38 71.98 0.68 -5.39 16 11 C 0.49 23.64 6.94 87.66 0.61 24.24 16 12 O -0.56 -29.15 13.00 15.81 0.21 -28.94 16 13 N -0.42 -20.75 2.05 -458.89 -0.94 -21.69 16 14 C -0.37 -18.50 6.36 84.02 0.53 -17.97 16 15 H 0.09 4.82 7.60 -2.91 -0.02 4.80 16 16 C 0.08 3.92 3.29 84.91 0.28 4.20 16 17 N -0.87 -44.89 13.96 21.65 0.30 -44.59 16 18 Si 0.89 41.77 25.07 68.60 1.72 43.49 16 19 H -0.25 -11.43 6.24 99.48 0.62 -10.81 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -14.37 7.11 99.48 0.71 -13.67 16 22 C 0.13 6.15 5.34 38.22 0.20 6.36 16 23 C -0.20 -9.16 9.00 22.41 0.20 -8.96 16 24 C -0.11 -3.81 10.04 22.25 0.22 -3.59 16 25 C -0.15 -5.05 10.04 22.30 0.22 -4.82 16 26 C -0.11 -4.08 10.04 22.25 0.22 -3.85 16 27 C -0.17 -7.80 6.37 22.41 0.14 -7.66 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.56 7.95 -2.39 -0.02 1.54 16 40 H 0.05 1.37 8.08 -2.39 -0.02 1.35 16 41 H 0.08 3.33 5.61 -2.39 -0.01 3.32 16 42 H 0.09 2.70 7.95 -2.39 -0.02 2.68 16 43 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.29 13.76 8.31 -92.71 -0.77 12.99 16 45 H 0.16 7.59 4.65 -52.21 -0.24 7.34 16 46 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 47 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 48 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 49 H 0.12 6.01 4.90 -2.91 -0.01 5.99 16 Total: -1.00 -61.28 385.02 5.82 -55.45 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.59 Total: 32.41 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 5.19 Total: -20.08 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -0.64 Total: -66.28 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.04 Total: -45.00 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.72 Total: 43.49 kcal Total: -61.28 5.82 -55.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841087992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.068 kcal (2) G-P(sol) polarization free energy of solvation -61.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds