Wall clock time and date at job start Tue Mar 31 2020 12:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99841 * 2 1 4 4 H 1.08999 * 109.47030 * 16.06463 * 3 2 1 5 5 C 1.53008 * 109.46649 * 256.07397 * 3 2 1 6 6 N 1.46492 * 109.47356 * 64.79035 * 5 3 2 7 7 C 1.34772 * 120.00446 * 184.34450 * 6 5 3 8 8 O 1.21287 * 119.99362 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00689 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.47495 * 180.02562 * 9 7 6 11 11 C 1.37641 * 120.12879 * 265.00261 * 10 9 7 12 12 C 1.38610 * 120.24836 * 179.97438 * 11 10 9 13 13 C 1.38660 * 120.50297 * 0.02734 * 12 11 10 14 14 C 1.37600 * 120.24452 * 0.02562 * 13 12 11 15 15 C 1.40702 * 120.12565 * 84.72466 * 10 9 7 16 16 C 1.41391 * 120.24398 * 0.02562 * 15 10 9 17 17 H 1.08000 * 119.99817 * 329.86115 * 16 15 10 18 18 C 1.39940 * 120.00311 * 149.86252 * 16 15 10 19 19 N 1.30828 * 119.99967 * 346.62201 * 18 16 15 20 20 Si 1.86799 * 120.00470 * 166.61569 * 18 16 15 21 21 H 1.48508 * 109.46720 * 60.00336 * 20 18 16 22 22 H 1.48496 * 109.47457 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47215 * 300.00586 * 20 18 16 24 24 C 1.52995 * 109.47111 * 136.07525 * 3 2 1 25 25 C 1.53005 * 109.47090 * 294.15945 * 24 3 2 26 26 C 1.52997 * 109.47037 * 294.41583 * 25 24 3 27 27 C 1.52997 * 109.47312 * 174.41365 * 25 24 3 28 28 H 1.08997 * 109.47237 * 65.06882 * 1 2 3 29 29 H 1.09001 * 109.46675 * 185.06833 * 1 2 3 30 30 H 1.08999 * 109.47247 * 305.06801 * 1 2 3 31 31 H 1.09000 * 109.46432 * 184.79367 * 5 3 2 32 32 H 1.09003 * 109.46732 * 304.79104 * 5 3 2 33 33 H 0.97005 * 120.00306 * 4.35093 * 6 5 3 34 34 H 1.08996 * 109.47152 * 300.00407 * 9 7 6 35 35 H 1.09002 * 109.46950 * 60.00159 * 9 7 6 36 36 H 1.07998 * 119.87233 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.75188 * 179.97438 * 12 11 10 38 38 H 1.07993 * 119.87861 * 179.97438 * 13 12 11 39 39 H 1.08004 * 120.12314 * 179.97438 * 14 13 12 40 40 H 0.96996 * 120.00047 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.46782 * 174.16288 * 24 3 2 42 42 H 1.08997 * 109.47595 * 54.16175 * 24 3 2 43 43 H 1.09003 * 109.46823 * 54.41139 * 25 24 3 44 44 H 1.08995 * 109.47205 * 299.99695 * 26 25 24 45 45 H 1.09006 * 109.47748 * 59.99958 * 26 25 24 46 46 H 1.09006 * 109.47088 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.46672 * 55.41619 * 27 25 24 48 48 H 1.08989 * 109.47355 * 175.41851 * 27 25 24 49 49 H 1.09004 * 109.47091 * 295.42285 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2558 2.0391 0.2844 5 6 2.5348 1.6301 -1.4002 6 7 1.4117 1.7012 -2.3381 7 6 1.6423 1.8894 -3.6526 8 8 2.7797 1.9995 -4.0590 9 6 0.4870 1.9630 -4.6174 10 6 1.0116 2.1760 -6.0140 11 6 1.0981 3.4478 -6.5330 12 6 1.5807 3.6466 -7.8171 13 6 1.9809 2.5695 -8.5932 14 6 1.9021 1.2892 -8.0952 15 6 1.4202 1.0759 -6.7903 16 6 1.3409 -0.2346 -6.2656 17 1 1.4478 -0.3985 -5.2035 18 6 1.1238 -1.3195 -7.1226 19 7 0.7361 -1.1123 -8.3548 20 14 1.3876 -3.0633 -6.5072 21 1 0.4819 -3.3257 -5.3599 22 1 1.0919 -4.0241 -7.6003 23 1 2.7979 -3.2266 -6.0720 24 6 3.1668 1.3489 1.0007 25 6 2.6213 1.1685 2.4187 26 6 1.7422 2.3665 2.7832 27 6 3.7868 1.0723 3.4052 28 1 -0.3633 0.4332 -0.9319 29 1 -0.3633 -1.0237 0.0908 30 1 -0.3634 0.5904 0.8411 31 1 3.0531 2.5888 -1.3807 32 1 3.2258 0.8498 -1.7192 33 1 0.5020 1.6128 -2.0132 34 1 -0.0776 1.0315 -4.5799 35 1 -0.1634 2.7934 -4.3427 36 1 0.7896 4.2941 -5.9372 37 1 1.6448 4.6480 -8.2165 38 1 2.3549 2.7359 -9.5925 39 1 2.2139 0.4516 -8.7016 40 1 0.5852 -1.8642 -8.9487 41 1 3.6754 2.3100 0.9266 42 1 3.8707 0.5472 0.7775 43 1 2.0284 0.2550 2.4665 44 1 2.3349 3.2800 2.7354 45 1 0.9117 2.4351 2.0805 46 1 1.3532 2.2378 3.7933 47 1 4.4254 1.9493 3.2996 48 1 3.3988 1.0256 4.4226 49 1 4.3667 0.1734 3.1958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841349699.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:16 Heat of formation + Delta-G solvation = -89.704681 kcal Electronic energy + Delta-G solvation = -27103.968703 eV Core-core repulsion = 23415.847618 eV Total energy + Delta-G solvation = -3688.121085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.61379 -38.59477 -37.21295 -36.02556 -34.13041 -33.53220 -31.78020 -30.72989 -29.40722 -27.50702 -27.28214 -26.51366 -25.59544 -24.69689 -21.84325 -20.89580 -20.67365 -20.04337 -19.24074 -17.13101 -17.05479 -16.61167 -16.03897 -15.49461 -15.31307 -14.79518 -14.70078 -14.55684 -14.31498 -14.11764 -13.57220 -13.51860 -13.41978 -12.95201 -12.71281 -12.60441 -12.52251 -12.44858 -12.02398 -11.72589 -11.69566 -11.51656 -11.44528 -11.12150 -11.04544 -10.97570 -10.93376 -10.84509 -10.66633 -10.62203 -10.35395 -9.75322 -9.43352 -9.33216 -9.12400 -9.08115 -8.65922 -7.26846 -7.20143 -6.65532 -4.29598 2.85097 3.01486 3.10870 3.15560 3.31598 3.39391 3.59942 3.65704 4.00492 4.45320 4.62291 4.66834 4.73408 4.86320 4.92449 5.07898 5.19745 5.26202 5.34301 5.43387 5.44995 5.51297 5.56487 5.58294 5.67416 5.71184 5.74369 5.83109 5.92258 5.97794 6.04162 6.08616 6.14611 6.21145 6.31683 6.47063 6.54265 6.81311 6.84407 7.05188 7.16403 7.32627 7.46034 7.69482 7.91718 7.98792 8.12940 8.16436 8.37197 8.70146 8.91427 8.98073 9.06473 10.29937 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.003312 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.530471 B = 8452.260027 C = 9779.196388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.077 3.923 4 H 0.070 0.930 5 C 0.103 3.897 6 N -0.744 5.744 7 C 0.514 3.486 8 O -0.520 6.520 9 C -0.071 4.071 10 C -0.177 4.177 11 C -0.084 4.084 12 C -0.236 4.236 13 C -0.109 4.109 14 C -0.154 4.154 15 C 0.130 3.870 16 C -0.459 4.459 17 H 0.073 0.927 18 C 0.077 3.923 19 N -0.802 5.802 20 Si 0.904 3.096 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.116 4.116 25 C -0.096 4.096 26 C -0.151 4.151 27 C -0.147 4.147 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.390 0.610 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.279 0.721 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 3.012 19.647 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.019 3.981 4 H 0.087 0.913 5 C -0.021 4.021 6 N -0.400 5.400 7 C 0.302 3.698 8 O -0.394 6.394 9 C -0.111 4.111 10 C -0.178 4.178 11 C -0.102 4.102 12 C -0.256 4.256 13 C -0.127 4.127 14 C -0.173 4.173 15 C 0.128 3.872 16 C -0.489 4.489 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.428 5.428 20 Si 0.728 3.272 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.154 4.154 25 C -0.115 4.115 26 C -0.208 4.208 27 C -0.204 4.204 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.225 0.775 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.756 2.794 19.108 19.326 hybrid contribution -0.556 -0.666 0.309 0.921 sum -1.312 2.128 19.417 19.578 Atomic orbital electron populations 1.22890 0.81269 1.02998 0.99643 1.87974 1.19377 1.27147 1.94898 1.22503 0.96141 0.85366 0.94095 0.91256 1.21752 0.90458 1.01961 0.87941 1.46167 1.09043 1.77074 1.07698 1.21227 0.91944 0.75001 0.81655 1.90681 1.23831 1.47482 1.77382 1.20267 0.95163 1.02953 0.92705 1.19104 1.10336 0.93701 0.94702 1.20304 0.99885 0.94886 0.95126 1.20317 1.12368 0.96654 0.96215 1.20678 1.00703 0.93738 0.97622 1.21253 1.03468 0.95015 0.97560 1.17337 0.86871 0.91897 0.91105 1.19417 1.43976 0.90742 0.94808 0.90854 1.25845 0.92422 1.01280 0.94444 1.69798 1.33125 1.33690 1.06169 0.86444 0.80113 0.81426 0.79176 1.19116 1.20409 1.18923 1.21779 0.97128 1.03110 0.93335 1.21073 0.96967 0.99193 0.94217 1.21935 0.99621 0.98138 1.01115 1.21826 0.98029 1.01847 0.98690 0.94023 0.89497 0.94055 0.91291 0.90706 0.77538 0.88579 0.90744 0.89769 0.89636 0.89550 0.86785 0.91024 0.90418 0.90522 0.90554 0.92591 0.92855 0.92764 0.92726 0.92821 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.64 101.05 1.08 1.34 16 2 O -0.38 -4.43 9.77 -35.23 -0.34 -4.77 16 3 C 0.08 0.80 2.18 -26.73 -0.06 0.74 16 4 H 0.07 0.62 5.79 -51.93 -0.30 0.32 16 5 C 0.10 1.42 5.34 -4.04 -0.02 1.40 16 6 N -0.74 -11.29 5.49 -60.29 -0.33 -11.62 16 7 C 0.51 10.31 7.42 -10.99 -0.08 10.23 16 8 O -0.52 -12.81 16.03 5.55 0.09 -12.73 16 9 C -0.07 -1.42 5.19 -29.04 -0.15 -1.57 16 10 C -0.18 -4.34 4.43 -103.91 -0.46 -4.80 16 11 C -0.08 -1.97 9.66 -39.66 -0.38 -2.35 16 12 C -0.24 -5.59 10.05 -39.29 -0.39 -5.99 16 13 C -0.11 -2.71 10.02 -39.66 -0.40 -3.10 16 14 C -0.15 -4.19 8.65 -38.87 -0.34 -4.53 16 15 C 0.13 3.56 5.52 -106.83 -0.59 2.97 16 16 C -0.46 -12.40 8.04 -37.75 -0.30 -12.70 16 17 H 0.07 1.95 6.81 -52.49 -0.36 1.60 16 18 C 0.08 1.97 5.19 -17.34 -0.09 1.88 16 19 N -0.80 -21.16 11.06 55.55 0.61 -20.54 16 20 Si 0.90 19.47 29.58 -169.99 -5.03 14.44 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.12 -1.04 4.38 -26.73 -0.12 -1.16 16 25 C -0.10 -0.75 2.87 -90.62 -0.26 -1.01 16 26 C -0.15 -1.04 8.97 37.16 0.33 -0.71 16 27 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 28 H 0.04 0.37 6.10 -51.93 -0.32 0.06 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.30 8.02 -51.93 -0.42 -0.12 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.39 4.77 6.24 -40.82 -0.25 4.52 16 34 H 0.10 1.90 7.14 -51.93 -0.37 1.53 16 35 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.11 3.19 6.41 -52.48 -0.34 2.85 16 40 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.67 7.71 -51.93 -0.40 0.27 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.37 6.47 -51.93 -0.34 0.03 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 0.34 8.14 -51.94 -0.42 -0.08 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -31.94 393.64 -9.10 -41.05 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.14 Total: 8.30 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.90 Total: -20.06 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.28 Total: -32.16 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.26 Total: -17.50 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.94 -9.10 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841349699.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.659 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds