Wall clock time and date at job start Tue Mar 31 2020 12:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99841 * 2 1 4 4 H 1.08999 * 109.47030 * 16.06463 * 3 2 1 5 5 C 1.53008 * 109.46649 * 256.07397 * 3 2 1 6 6 N 1.46492 * 109.47356 * 64.79035 * 5 3 2 7 7 C 1.34772 * 120.00446 * 184.34450 * 6 5 3 8 8 O 1.21287 * 119.99362 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00689 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.47495 * 180.02562 * 9 7 6 11 11 C 1.37641 * 120.12879 * 265.00261 * 10 9 7 12 12 C 1.38610 * 120.24836 * 179.97438 * 11 10 9 13 13 C 1.38660 * 120.50297 * 0.02734 * 12 11 10 14 14 C 1.37600 * 120.24452 * 0.02562 * 13 12 11 15 15 C 1.40702 * 120.12565 * 84.72466 * 10 9 7 16 16 C 1.41391 * 120.24398 * 0.02562 * 15 10 9 17 17 H 1.08000 * 119.99817 * 329.86115 * 16 15 10 18 18 C 1.39940 * 120.00311 * 149.86252 * 16 15 10 19 19 N 1.30828 * 119.99967 * 346.62201 * 18 16 15 20 20 Si 1.86799 * 120.00470 * 166.61569 * 18 16 15 21 21 H 1.48508 * 109.46720 * 60.00336 * 20 18 16 22 22 H 1.48496 * 109.47457 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47215 * 300.00586 * 20 18 16 24 24 C 1.52995 * 109.47111 * 136.07525 * 3 2 1 25 25 C 1.53005 * 109.47090 * 294.15945 * 24 3 2 26 26 C 1.52997 * 109.47037 * 294.41583 * 25 24 3 27 27 C 1.52997 * 109.47312 * 174.41365 * 25 24 3 28 28 H 1.08997 * 109.47237 * 65.06882 * 1 2 3 29 29 H 1.09001 * 109.46675 * 185.06833 * 1 2 3 30 30 H 1.08999 * 109.47247 * 305.06801 * 1 2 3 31 31 H 1.09000 * 109.46432 * 184.79367 * 5 3 2 32 32 H 1.09003 * 109.46732 * 304.79104 * 5 3 2 33 33 H 0.97005 * 120.00306 * 4.35093 * 6 5 3 34 34 H 1.08996 * 109.47152 * 300.00407 * 9 7 6 35 35 H 1.09002 * 109.46950 * 60.00159 * 9 7 6 36 36 H 1.07998 * 119.87233 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.75188 * 179.97438 * 12 11 10 38 38 H 1.07993 * 119.87861 * 179.97438 * 13 12 11 39 39 H 1.08004 * 120.12314 * 179.97438 * 14 13 12 40 40 H 0.96996 * 120.00047 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.46782 * 174.16288 * 24 3 2 42 42 H 1.08997 * 109.47595 * 54.16175 * 24 3 2 43 43 H 1.09003 * 109.46823 * 54.41139 * 25 24 3 44 44 H 1.08995 * 109.47205 * 299.99695 * 26 25 24 45 45 H 1.09006 * 109.47748 * 59.99958 * 26 25 24 46 46 H 1.09006 * 109.47088 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.46672 * 55.41619 * 27 25 24 48 48 H 1.08989 * 109.47355 * 175.41851 * 27 25 24 49 49 H 1.09004 * 109.47091 * 295.42285 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2558 2.0391 0.2844 5 6 2.5348 1.6301 -1.4002 6 7 1.4117 1.7012 -2.3381 7 6 1.6423 1.8894 -3.6526 8 8 2.7797 1.9995 -4.0590 9 6 0.4870 1.9630 -4.6174 10 6 1.0116 2.1760 -6.0140 11 6 1.0981 3.4478 -6.5330 12 6 1.5807 3.6466 -7.8171 13 6 1.9809 2.5695 -8.5932 14 6 1.9021 1.2892 -8.0952 15 6 1.4202 1.0759 -6.7903 16 6 1.3409 -0.2346 -6.2656 17 1 1.4478 -0.3985 -5.2035 18 6 1.1238 -1.3195 -7.1226 19 7 0.7361 -1.1123 -8.3548 20 14 1.3876 -3.0633 -6.5072 21 1 0.4819 -3.3257 -5.3599 22 1 1.0919 -4.0241 -7.6003 23 1 2.7979 -3.2266 -6.0720 24 6 3.1668 1.3489 1.0007 25 6 2.6213 1.1685 2.4187 26 6 1.7422 2.3665 2.7832 27 6 3.7868 1.0723 3.4052 28 1 -0.3633 0.4332 -0.9319 29 1 -0.3633 -1.0237 0.0908 30 1 -0.3634 0.5904 0.8411 31 1 3.0531 2.5888 -1.3807 32 1 3.2258 0.8498 -1.7192 33 1 0.5020 1.6128 -2.0132 34 1 -0.0776 1.0315 -4.5799 35 1 -0.1634 2.7934 -4.3427 36 1 0.7896 4.2941 -5.9372 37 1 1.6448 4.6480 -8.2165 38 1 2.3549 2.7359 -9.5925 39 1 2.2139 0.4516 -8.7016 40 1 0.5852 -1.8642 -8.9487 41 1 3.6754 2.3100 0.9266 42 1 3.8707 0.5472 0.7775 43 1 2.0284 0.2550 2.4665 44 1 2.3349 3.2800 2.7354 45 1 0.9117 2.4351 2.0805 46 1 1.3532 2.2378 3.7933 47 1 4.4254 1.9493 3.2996 48 1 3.3988 1.0256 4.4226 49 1 4.3667 0.1734 3.1958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841349699.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:15 Heat of formation + Delta-G solvation = -108.364452 kcal Electronic energy + Delta-G solvation = -27104.777852 eV Core-core repulsion = 23415.847618 eV Total energy + Delta-G solvation = -3688.930234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.94882 -39.80668 -38.96290 -36.70301 -35.49496 -35.45459 -33.49122 -31.77161 -31.33560 -28.82878 -28.03973 -27.26400 -27.12506 -26.24431 -22.84903 -22.76819 -22.19751 -21.04645 -20.66782 -19.06358 -18.01409 -17.90577 -17.36867 -17.09125 -16.41441 -16.27833 -16.13177 -15.61059 -15.45296 -15.28466 -15.17001 -14.73849 -14.45007 -14.35834 -14.13739 -13.95224 -13.54362 -13.38041 -13.28218 -13.08193 -12.92199 -12.78105 -12.74237 -12.60517 -12.48358 -12.45530 -12.15761 -12.12441 -11.68639 -11.45951 -11.38721 -11.32084 -11.23017 -11.04868 -10.88604 -10.47654 -10.02180 -9.20477 -9.14422 -8.57638 -6.30991 0.99479 1.12827 1.34491 1.44687 1.51993 1.82311 2.20067 2.32714 2.79938 2.81393 3.64183 3.72447 3.89462 4.01910 4.11412 4.13715 4.22501 4.38893 4.41383 4.43994 4.53834 4.56038 4.57452 4.62959 4.70399 4.77117 4.79450 4.82903 4.85126 4.87732 4.91863 5.05759 5.07329 5.12542 5.13002 5.20539 5.33972 5.34989 5.47002 5.52174 5.53988 5.55380 5.78223 6.03015 6.16416 6.19932 6.26731 6.42613 6.61006 6.74397 6.99840 7.10633 7.42112 8.39777 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.003312 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.530471 B = 8452.260027 C = 9779.196388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.398 6.398 3 C 0.087 3.913 4 H 0.093 0.907 5 C 0.101 3.899 6 N -0.723 5.723 7 C 0.515 3.485 8 O -0.575 6.575 9 C -0.070 4.070 10 C -0.184 4.184 11 C -0.093 4.093 12 C -0.237 4.237 13 C -0.119 4.119 14 C -0.188 4.188 15 C 0.096 3.904 16 C -0.486 4.486 17 H 0.066 0.934 18 C 0.037 3.963 19 N -0.831 5.831 20 Si 0.969 3.031 21 H -0.254 1.254 22 H -0.265 1.265 23 H -0.273 1.273 24 C -0.115 4.115 25 C -0.092 4.092 26 C -0.150 4.150 27 C -0.146 4.146 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.408 0.592 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.285 0.715 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 4.009 21.869 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.317 6.317 3 C 0.029 3.971 4 H 0.111 0.889 5 C -0.023 4.023 6 N -0.378 5.378 7 C 0.303 3.697 8 O -0.453 6.453 9 C -0.109 4.109 10 C -0.185 4.185 11 C -0.111 4.111 12 C -0.256 4.256 13 C -0.137 4.137 14 C -0.208 4.208 15 C 0.094 3.906 16 C -0.516 4.516 17 H 0.084 0.916 18 C -0.177 4.177 19 N -0.458 5.458 20 Si 0.790 3.210 21 H -0.178 1.178 22 H -0.189 1.189 23 H -0.198 1.198 24 C -0.153 4.153 25 C -0.110 4.110 26 C -0.207 4.207 27 C -0.203 4.203 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.245 0.755 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.071 3.795 21.371 21.803 hybrid contribution -0.172 -0.866 -0.367 0.956 sum -2.242 2.929 21.004 21.325 Atomic orbital electron populations 1.23082 0.79945 1.03934 1.00637 1.87962 1.21007 1.27894 1.94885 1.22479 0.97081 0.85571 0.91970 0.88923 1.21899 0.89713 1.01300 0.89376 1.45950 1.10556 1.74894 1.06395 1.21177 0.90938 0.74522 0.83035 1.90662 1.25650 1.50411 1.78568 1.20289 0.95509 1.04555 0.90587 1.19597 1.08968 0.93513 0.96468 1.20764 0.99241 0.95616 0.95508 1.20759 1.10889 0.97714 0.96251 1.20962 1.00593 0.93308 0.98854 1.21259 1.05691 0.95571 0.98230 1.17736 0.87895 0.93211 0.91802 1.19523 1.45723 0.91660 0.94703 0.91555 1.26599 0.91695 1.04898 0.94497 1.69860 1.33759 1.35039 1.07182 0.85455 0.79481 0.76758 0.79264 1.17841 1.18926 1.19801 1.21792 0.96474 1.03170 0.93818 1.21023 0.97248 0.99350 0.93412 1.21927 0.99480 0.97640 1.01623 1.21821 0.97800 1.01782 0.98942 0.94009 0.89063 0.91679 0.90757 0.93704 0.75508 0.88666 0.86680 0.86287 0.86423 0.87536 0.88908 0.90448 0.89384 0.91944 0.91494 0.92166 0.92594 0.92027 0.92295 0.91966 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.64 113.37 1.21 1.53 16 2 O -0.40 -8.84 9.77 -148.98 -1.46 -10.29 16 3 C 0.09 1.66 2.18 30.60 0.07 1.73 16 4 H 0.09 1.36 5.79 -2.39 -0.01 1.34 16 5 C 0.10 2.71 5.34 86.38 0.46 3.18 16 6 N -0.72 -20.99 5.49 -463.06 -2.54 -23.53 16 7 C 0.52 20.40 7.42 87.66 0.65 21.05 16 8 O -0.57 -28.79 16.03 -3.05 -0.05 -28.84 16 9 C -0.07 -2.72 5.19 29.10 0.15 -2.56 16 10 C -0.18 -8.99 4.43 -19.40 -0.09 -9.08 16 11 C -0.09 -4.23 9.66 22.22 0.21 -4.01 16 12 C -0.24 -10.87 10.05 22.46 0.23 -10.64 16 13 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 14 C -0.19 -10.63 8.65 22.73 0.20 -10.43 16 15 C 0.10 5.38 5.52 -21.29 -0.12 5.26 16 16 C -0.49 -27.10 8.04 23.46 0.19 -26.91 16 17 H 0.07 3.66 6.81 -2.91 -0.02 3.64 16 18 C 0.04 1.94 5.19 85.25 0.44 2.38 16 19 N -0.83 -45.24 11.06 21.83 0.24 -45.00 16 20 Si 0.97 40.61 29.58 68.60 2.03 42.64 16 21 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 22 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 24 C -0.11 -1.91 4.38 30.59 0.13 -1.78 16 25 C -0.09 -1.27 2.87 -10.79 -0.03 -1.30 16 26 C -0.15 -1.65 8.97 71.98 0.65 -1.00 16 27 C -0.15 -1.82 9.19 71.98 0.66 -1.16 16 28 H 0.04 0.65 6.10 -2.39 -0.01 0.63 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.06 0.73 8.02 -2.39 -0.02 0.71 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.41 9.02 6.24 -92.70 -0.58 8.44 16 34 H 0.10 3.72 7.14 -2.39 -0.02 3.70 16 35 H 0.12 3.46 8.05 -2.39 -0.02 3.44 16 36 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.09 5.49 6.41 -2.91 -0.02 5.47 16 40 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.07 7.71 -2.39 -0.02 1.05 16 44 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 0.58 6.47 -2.38 -0.02 0.57 16 46 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -71.96 393.64 3.81 -68.15 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.35 Total: 36.33 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 5.23 Total: -39.47 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -2.30 Total: -68.52 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.50 Total: -39.13 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -71.96 3.81 -68.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841349699.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.213 kcal (2) G-P(sol) polarization free energy of solvation -71.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds