Wall clock time and date at job start Tue Mar 31 2020 12:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.53000 * 109.47229 * 65.00430 * 3 2 1 5 5 C 1.52989 * 109.47332 * 183.53861 * 4 3 2 6 6 C 1.53004 * 109.46958 * 185.00263 * 3 2 1 7 7 N 1.46497 * 109.47384 * 60.93372 * 6 3 2 8 8 C 1.46499 * 119.99714 * 266.12341 * 7 6 3 9 9 C 1.50702 * 109.47018 * 279.99619 * 8 7 6 10 10 H 1.07999 * 120.00324 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00205 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99485 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00174 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47180 * 89.99356 * 13 11 9 15 15 H 1.48494 * 109.47148 * 209.99546 * 13 11 9 16 16 H 1.48502 * 109.46987 * 329.99455 * 13 11 9 17 17 C 1.34778 * 120.00164 * 86.12075 * 7 6 3 18 18 O 1.21776 * 119.99798 * 7.95095 * 17 7 6 19 19 C 1.41552 * 119.99748 * 187.95424 * 17 7 6 20 20 C 1.50695 * 119.99979 * 331.29359 * 19 17 7 21 21 C 1.35620 * 119.99676 * 151.30291 * 19 17 7 22 22 C 1.41612 * 119.99947 * 186.97949 * 21 19 17 23 23 C 1.37950 * 126.10591 * 177.92527 * 22 21 19 24 24 C 1.40322 * 106.52685 * 179.75020 * 23 22 21 25 25 C 1.35152 * 107.20318 * 0.40980 * 24 23 22 26 26 O 1.34021 * 109.03898 * 359.58582 * 25 24 23 27 27 H 1.09005 * 109.47367 * 60.00197 * 1 2 3 28 28 H 1.09002 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47075 * 299.99401 * 1 2 3 30 30 H 1.09009 * 109.46975 * 240.00445 * 2 1 3 31 31 H 1.09003 * 109.47475 * 120.00339 * 2 1 3 32 32 H 1.08997 * 109.47242 * 305.00039 * 3 2 1 33 33 H 1.09002 * 109.46325 * 303.53885 * 4 3 2 34 34 H 1.08996 * 109.47385 * 63.53343 * 4 3 2 35 35 H 1.09000 * 109.47583 * 304.55647 * 5 4 3 36 36 H 1.09011 * 109.47081 * 64.55235 * 5 4 3 37 37 H 1.09000 * 109.47201 * 184.54946 * 5 4 3 38 38 H 1.08999 * 109.46880 * 300.93171 * 6 3 2 39 39 H 1.09001 * 109.46929 * 180.93705 * 6 3 2 40 40 H 1.08996 * 109.47336 * 39.99692 * 8 7 6 41 41 H 1.09001 * 109.46986 * 159.99800 * 8 7 6 42 42 H 0.97002 * 119.99098 * 180.02562 * 12 11 9 43 43 H 1.09001 * 109.47446 * 217.01915 * 20 19 17 44 44 H 1.09003 * 109.47594 * 337.02525 * 20 19 17 45 45 H 1.09004 * 109.47214 * 97.02447 * 20 19 17 46 46 H 1.07997 * 120.00344 * 6.98249 * 21 19 17 47 47 H 1.07994 * 126.73256 * 359.97438 * 23 22 21 48 48 H 1.07999 * 126.39310 * 180.25647 * 24 23 22 49 49 H 1.08000 * 125.48020 * 179.84595 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0679 3.5935 1.2706 6 6 3.5648 1.4443 -0.1258 7 7 3.9514 0.8093 -1.3881 8 6 4.2766 -0.6188 -1.4200 9 6 5.6864 -0.8241 -0.9285 10 1 6.2808 0.0243 -0.6232 11 6 6.2177 -2.0951 -0.8694 12 7 5.4940 -3.1282 -1.2416 13 14 7.9654 -2.3494 -0.2608 14 1 7.9524 -2.5549 1.2099 15 1 8.5510 -3.5430 -0.9223 16 1 8.7819 -1.1525 -0.5863 17 6 4.0079 1.5388 -2.5199 18 8 3.8803 2.7489 -2.4713 19 6 4.2156 0.8983 -3.7651 20 6 4.9873 -0.3945 -3.8280 21 6 3.7202 1.4484 -4.9014 22 6 3.7978 0.7381 -6.1241 23 6 3.3014 1.1577 -7.3409 24 6 3.6072 0.1482 -8.2663 25 6 4.2543 -0.8287 -7.5929 26 8 4.3705 -0.4701 -6.3068 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6053 1.9815 -0.8418 33 1 0.5534 2.0696 1.4273 34 1 2.1205 1.6255 2.1450 35 1 3.1377 3.6520 1.0698 36 1 1.5216 4.1139 0.4838 37 1 1.8526 4.0600 2.2319 38 1 3.9987 0.8911 0.7071 39 1 3.9295 2.4714 -0.1091 40 1 3.5849 -1.1635 -0.7775 41 1 4.1908 -0.9882 -2.4419 42 1 5.8678 -4.0224 -1.1997 43 1 5.5954 -0.4111 -4.7324 44 1 5.6337 -0.4748 -2.9539 45 1 4.2909 -1.2330 -3.8431 46 1 3.2665 2.4280 -4.8739 47 1 2.7827 2.0833 -7.5424 48 1 3.3677 0.1503 -9.3194 49 1 4.6227 -1.7484 -8.0229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847447220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:32 Heat of formation + Delta-G solvation = 4.666803 kcal Electronic energy + Delta-G solvation = -28202.166492 eV Core-core repulsion = 24518.137661 eV Total energy + Delta-G solvation = -3684.028831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32340 -39.78456 -37.09023 -35.17387 -34.25270 -32.90981 -32.50733 -31.51451 -29.99950 -28.08297 -27.25188 -25.99388 -24.43300 -23.39750 -22.49258 -21.72788 -21.54959 -20.15338 -19.44703 -17.97191 -16.71360 -16.62978 -15.97017 -15.82606 -15.60724 -14.69284 -14.51981 -14.43839 -14.31737 -14.08973 -13.72325 -13.13625 -13.08435 -12.92719 -12.59605 -12.51844 -12.40689 -12.30708 -12.15188 -11.74105 -11.66911 -11.55889 -11.40902 -11.07519 -11.02458 -10.90782 -10.86916 -10.39957 -10.21223 -10.12130 -10.10677 -10.00794 -9.69090 -9.67015 -9.32400 -8.95275 -8.45536 -7.75716 -7.38433 -6.22133 -4.28046 0.91314 2.38955 3.01220 3.20304 3.23505 3.28247 3.32101 3.81991 4.06664 4.33010 4.98509 5.07866 5.09250 5.11318 5.17452 5.20610 5.30600 5.50743 5.51664 5.59774 5.66541 5.72650 5.83435 5.90425 5.93847 5.96596 6.05443 6.11534 6.16699 6.19108 6.27177 6.29916 6.34195 6.42915 6.47710 6.47812 6.54412 6.58272 6.64509 6.68653 6.80869 6.84692 6.91882 7.31894 7.35523 7.38341 7.59407 7.73185 8.03640 8.37050 8.76116 8.98487 9.37577 10.83006 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007928 B = 0.005544 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.756163 B = 5049.136097 C = 7379.476373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.100 4.100 4 C -0.115 4.115 5 C -0.154 4.154 6 C 0.122 3.878 7 N -0.580 5.580 8 C 0.185 3.815 9 C -0.535 4.535 10 H 0.061 0.939 11 C 0.069 3.931 12 N -0.884 5.884 13 Si 0.893 3.107 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.548 3.452 18 O -0.575 6.575 19 C -0.112 4.112 20 C -0.147 4.147 21 C -0.068 4.068 22 C 0.030 3.970 23 C -0.199 4.199 24 C -0.217 4.217 25 C -0.046 4.046 26 O -0.150 6.150 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.085 0.915 42 H 0.266 0.734 43 H 0.058 0.942 44 H 0.131 0.869 45 H 0.084 0.916 46 H 0.150 0.850 47 H 0.148 0.852 48 H 0.145 0.855 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 4.604 -5.227 9.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.119 4.119 4 C -0.153 4.153 5 C -0.211 4.211 6 C -0.001 4.001 7 N -0.308 5.308 8 C 0.067 3.933 9 C -0.573 4.573 10 H 0.079 0.921 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.720 3.280 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.338 3.662 18 O -0.459 6.459 19 C -0.115 4.115 20 C -0.202 4.202 21 C -0.088 4.088 22 C -0.020 4.020 23 C -0.219 4.219 24 C -0.236 4.236 25 C -0.115 4.115 26 O -0.045 6.045 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.101 0.899 46 H 0.168 0.832 47 H 0.166 0.834 48 H 0.163 0.837 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.674 4.805 -4.937 9.592 hybrid contribution 0.875 -0.327 0.116 0.941 sum -5.799 4.478 -4.821 8.771 Atomic orbital electron populations 1.21813 0.96780 1.00994 1.01097 1.21687 0.94831 0.96421 1.03115 1.21565 0.96515 0.96153 0.97689 1.21541 1.00723 0.95585 0.97497 1.21828 1.02110 0.96352 1.00787 1.21413 0.93243 0.98676 0.86816 1.48113 1.63737 1.12496 1.06431 1.20868 0.95862 0.74454 1.02165 1.21411 0.98619 0.92960 1.44347 0.92101 1.24922 0.97949 0.95747 0.94890 1.69922 1.36784 0.98991 1.46463 0.86566 0.84433 0.77936 0.79037 1.20515 1.21012 1.19718 1.16904 0.77735 0.86642 0.84907 1.90737 1.53237 1.13983 1.87900 1.21380 0.98213 0.98603 0.93297 1.21907 1.00564 0.92137 1.05552 1.20327 1.02131 0.98449 0.87879 1.19918 1.00900 0.85559 0.95640 1.22143 1.06321 1.01678 0.91711 1.21641 1.05562 0.95608 1.00759 1.24256 1.04076 1.01251 0.81924 1.84475 1.60571 1.31687 1.27749 0.93312 0.93185 0.93058 0.90696 0.91991 0.91444 0.92044 0.92048 0.92164 0.92962 0.93393 0.90287 0.90860 0.94566 0.89813 0.92452 0.92386 0.85137 0.89856 0.83249 0.83384 0.83698 0.78421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.15 0.36 -1.65 16 2 C -0.12 -1.97 4.57 -26.73 -0.12 -2.09 16 3 C -0.10 -1.59 2.09 -90.62 -0.19 -1.78 16 4 C -0.12 -1.54 5.25 -26.74 -0.14 -1.68 16 5 C -0.15 -1.97 9.75 37.15 0.36 -1.61 16 6 C 0.12 2.27 4.67 -4.04 -0.02 2.25 16 7 N -0.58 -12.08 2.13 -178.50 -0.38 -12.46 16 8 C 0.19 4.21 3.81 -5.19 -0.02 4.19 16 9 C -0.54 -13.34 7.24 -34.44 -0.25 -13.59 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.88 -23.15 13.29 55.43 0.74 -22.42 16 13 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.55 11.66 7.20 -15.00 -0.11 11.56 16 18 O -0.57 -13.08 16.04 5.12 0.08 -13.00 16 19 C -0.11 -2.21 5.62 -104.30 -0.59 -2.79 16 20 C -0.15 -2.97 6.47 36.00 0.23 -2.73 16 21 C -0.07 -1.18 9.39 -39.23 -0.37 -1.55 16 22 C 0.03 0.48 6.67 -38.40 -0.26 0.22 16 23 C -0.20 -2.71 10.90 -38.90 -0.42 -3.14 16 24 C -0.22 -2.62 10.87 -39.90 -0.43 -3.05 16 25 C -0.05 -0.58 12.06 29.63 0.36 -0.22 16 26 O -0.15 -2.41 7.26 4.67 0.03 -2.38 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 30 H 0.07 1.37 5.64 -51.92 -0.29 1.08 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.75 6.41 -51.93 -0.33 0.41 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.84 6.29 -51.93 -0.33 0.51 16 36 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 39 H 0.07 1.39 5.68 -51.93 -0.29 1.10 16 40 H 0.04 0.87 6.03 -51.93 -0.31 0.55 16 41 H 0.08 1.94 2.94 -72.17 -0.21 1.73 16 42 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 43 H 0.06 1.11 6.04 -51.93 -0.31 0.80 16 44 H 0.13 2.99 4.12 -51.93 -0.21 2.78 16 45 H 0.08 1.73 6.80 -51.93 -0.35 1.38 16 46 H 0.15 2.43 7.69 -52.49 -0.40 2.02 16 47 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 48 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -27.78 380.70 -8.10 -35.87 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.58 Total: 9.64 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.70 Total: -16.02 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.36 Total: -34.88 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.12 Total: -15.38 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.78 -8.10 -35.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847447220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.541 kcal (2) G-P(sol) polarization free energy of solvation -27.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds