Wall clock time and date at job start Tue Mar 31 2020 12:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99694 * 2 1 4 4 O 1.20826 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00151 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47327 * 180.02562 * 5 3 2 7 7 C 1.38260 * 119.99559 * 264.99239 * 6 5 3 8 8 C 1.38212 * 119.99650 * 179.71963 * 7 6 5 9 9 C 1.38255 * 120.00300 * 0.28729 * 8 7 6 10 10 C 1.38216 * 119.99744 * 359.97134 * 9 8 7 11 11 C 1.38208 * 120.00333 * 85.19090 * 6 5 3 12 12 C 1.50698 * 120.00186 * 0.03695 * 11 6 5 13 13 N 1.46897 * 109.46930 * 80.17218 * 12 11 6 14 14 C 1.46908 * 111.00271 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47551 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47183 * 300.00165 * 15 14 13 17 17 C 1.53010 * 109.46995 * 59.99720 * 15 14 13 18 18 C 1.52995 * 109.47405 * 179.97438 * 15 14 13 19 19 C 1.50695 * 109.47085 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00597 * 0.02562 * 19 18 15 21 21 C 1.37882 * 119.99794 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99748 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99940 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47220 * 60.00260 * 23 21 19 25 25 H 1.48503 * 109.47373 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47531 * 300.00471 * 23 21 19 27 27 H 1.09005 * 109.47281 * 60.00130 * 1 2 3 28 28 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47494 * 300.00150 * 1 2 3 30 30 H 1.09005 * 109.47523 * 59.99760 * 5 3 2 31 31 H 1.09000 * 109.46991 * 299.99800 * 5 3 2 32 32 H 1.08002 * 120.00476 * 0.02562 * 7 6 5 33 33 H 1.07999 * 119.99941 * 180.25946 * 8 7 6 34 34 H 1.08005 * 120.00230 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.99715 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47640 * 200.17138 * 12 11 6 37 37 H 1.09000 * 109.47091 * 320.17597 * 12 11 6 38 38 H 1.00897 * 111.00432 * 303.95277 * 13 12 11 39 39 H 1.08997 * 109.46519 * 300.00264 * 14 13 12 40 40 H 1.09003 * 109.47086 * 59.99731 * 14 13 12 41 41 H 1.09002 * 109.47482 * 59.99432 * 16 15 14 42 42 H 1.08998 * 109.47314 * 179.97438 * 16 15 14 43 43 H 1.09007 * 109.47095 * 300.00068 * 16 15 14 44 44 H 1.08996 * 109.46799 * 60.00233 * 17 15 14 45 45 H 1.09002 * 109.46854 * 180.02562 * 17 15 14 46 46 H 1.09002 * 109.46905 * 300.00100 * 17 15 14 47 47 H 1.08996 * 109.47275 * 300.00310 * 18 15 14 48 48 H 1.09003 * 109.46987 * 59.99758 * 18 15 14 49 49 H 0.97000 * 119.99639 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9934 2.7202 0.0002 7 6 4.2891 3.3542 -1.1924 8 6 4.6753 4.6812 -1.1922 9 6 4.7717 5.3730 0.0009 10 6 4.4813 4.7377 1.1935 11 6 4.0936 3.4106 1.1932 12 6 3.7765 2.7181 2.4936 13 7 4.9293 1.9091 2.9113 14 6 4.6556 1.2172 4.1780 15 6 5.8765 0.3874 4.5801 16 6 6.1739 -0.6438 3.4896 17 6 7.0852 1.3095 4.7533 18 6 5.5917 -0.3327 5.8996 19 6 6.7941 -1.1504 6.2953 20 1 7.6736 -1.1558 5.6685 21 6 6.7717 -1.8911 7.4580 22 7 5.7009 -1.8843 8.2215 23 14 8.2618 -2.9054 7.9481 24 1 9.4360 -2.0116 8.1147 25 1 7.9859 -3.6033 9.2296 26 1 8.5486 -3.9072 6.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9557 0.7811 -0.8908 31 1 3.9563 0.7808 0.8892 32 1 4.2135 2.8139 -2.1245 33 1 4.9022 5.1777 -2.1241 34 1 5.0740 6.4099 0.0010 35 1 4.5570 5.2780 2.1256 36 1 3.5592 3.4634 3.2587 37 1 2.9089 2.0720 2.3589 38 1 5.1910 1.2532 2.1907 39 1 4.4442 1.9519 4.9549 40 1 3.7943 0.5607 4.0547 41 1 6.3769 -0.1305 2.5497 42 1 7.0440 -1.2346 3.7758 43 1 5.3128 -1.3006 3.3661 44 1 6.8734 2.0441 5.5302 45 1 7.9552 0.7182 5.0393 46 1 7.2883 1.8228 3.8134 47 1 5.3801 0.4022 6.6763 48 1 4.7305 -0.9894 5.7766 49 1 5.6850 -2.4056 9.0393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848578668.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:37 Heat of formation + Delta-G solvation = -77.822977 kcal Electronic energy + Delta-G solvation = -27247.027682 eV Core-core repulsion = 23559.421826 eV Total energy + Delta-G solvation = -3687.605856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90061 -39.51384 -37.58563 -36.65973 -34.75629 -33.09629 -32.31531 -30.88862 -29.05547 -27.30118 -26.94224 -26.34389 -26.01247 -24.20586 -22.60246 -22.19278 -21.49511 -20.46457 -17.98902 -17.83862 -16.96840 -16.94598 -16.29984 -16.18083 -15.84316 -15.27881 -14.93995 -14.58359 -14.21745 -13.93838 -13.77809 -13.67913 -13.36125 -13.14815 -12.87062 -12.71080 -12.40697 -12.32268 -12.21434 -12.08837 -11.97080 -11.77692 -11.20287 -11.02808 -11.00324 -10.91273 -10.85806 -10.78072 -10.72494 -10.48272 -10.25911 -10.13199 -9.68224 -9.07310 -8.92643 -8.86564 -8.76037 -8.30537 -8.12285 -5.95252 -3.95409 1.13197 1.30793 1.98963 2.55348 3.35424 3.40111 3.42292 3.64950 4.28771 4.46505 4.53106 4.65740 4.71655 4.83361 4.86931 4.87415 4.94408 4.99040 5.15975 5.23503 5.29224 5.40506 5.40934 5.56265 5.58397 5.70369 5.76843 5.90829 5.93751 5.97998 6.15634 6.22701 6.31779 6.32748 6.39224 6.49690 6.53633 6.67000 6.78386 6.83768 6.88035 7.18880 7.21095 7.26916 7.36340 7.52881 7.61066 7.71227 7.86142 8.04940 8.49202 9.09765 9.67307 11.16407 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.003040 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.823102 B = 9208.499258 C =10409.879951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.462 3.538 4 O -0.497 6.497 5 C -0.078 4.078 6 C -0.076 4.076 7 C -0.104 4.104 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.100 4.100 11 C -0.053 4.053 12 C 0.092 3.908 13 N -0.678 5.678 14 C 0.068 3.932 15 C -0.058 4.058 16 C -0.130 4.130 17 C -0.116 4.116 18 C 0.034 3.966 19 C -0.507 4.507 20 H 0.059 0.941 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.888 3.112 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.278 1.278 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.031 0.969 38 H 0.336 0.664 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.731 9.419 -20.267 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.304 3.696 4 O -0.383 6.383 5 C -0.115 4.115 6 C -0.076 4.076 7 C -0.122 4.122 8 C -0.142 4.142 9 C -0.133 4.133 10 C -0.119 4.119 11 C -0.053 4.053 12 C -0.037 4.037 13 N -0.311 5.311 14 C -0.061 4.061 15 C -0.058 4.058 16 C -0.187 4.187 17 C -0.173 4.173 18 C -0.003 4.003 19 C -0.546 4.546 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.203 1.203 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.156 0.844 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.728 10.156 -19.780 23.230 hybrid contribution -0.142 -1.267 0.138 1.283 sum -6.870 8.889 -19.641 22.627 Atomic orbital electron populations 1.23279 0.76159 1.03822 1.02533 1.86521 1.23585 1.33333 1.84156 1.23631 0.91840 0.81477 0.72649 1.90692 1.66986 1.36222 1.44422 1.20376 0.88195 0.96163 1.06774 1.19057 1.01417 0.93530 0.93622 1.20908 0.99396 0.95088 0.96819 1.21046 1.00639 0.94391 0.98111 1.21160 0.99709 0.99844 0.92565 1.21019 0.98534 0.94038 0.98273 1.19651 0.97669 0.94172 0.93809 1.20914 0.92200 0.96999 0.93588 1.60701 1.35276 1.28842 1.06266 1.22174 0.97592 0.96022 0.90275 1.20634 0.93261 0.94186 0.97767 1.21786 1.01968 0.98490 0.96501 1.21599 0.97927 0.98191 0.99599 1.19112 0.96810 0.94625 0.89754 1.21199 1.00380 1.26733 1.06248 0.92325 1.25014 0.95821 0.97027 0.96709 1.69958 1.28052 1.41757 1.14010 0.86727 0.83463 0.80497 0.77712 1.20310 1.21468 1.20347 0.91970 0.87954 0.91783 0.86512 0.87006 0.86219 0.86123 0.86053 0.85710 0.90009 0.95129 0.84370 0.91327 0.95802 0.94880 0.91593 0.94028 0.94166 0.92690 0.93849 0.96682 0.96931 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.55 101.05 1.07 1.37 16 2 O -0.36 -4.00 10.57 -39.25 -0.41 -4.42 16 3 C 0.46 5.54 7.18 36.00 0.26 5.80 16 4 O -0.50 -7.21 15.78 -18.75 -0.30 -7.51 16 5 C -0.08 -0.79 5.28 -29.04 -0.15 -0.94 16 6 C -0.08 -0.86 4.37 -104.63 -0.46 -1.32 16 7 C -0.10 -1.06 9.68 -39.58 -0.38 -1.44 16 8 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 9 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 10 C -0.10 -1.15 9.67 -39.58 -0.38 -1.54 16 11 C -0.05 -0.65 5.39 -104.63 -0.56 -1.22 16 12 C 0.09 1.21 5.07 -4.98 -0.03 1.19 16 13 N -0.68 -9.78 5.69 -115.06 -0.65 -10.43 16 14 C 0.07 1.16 4.65 -3.82 -0.02 1.14 16 15 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 16 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 17 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 18 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 19 C -0.51 -13.79 7.65 -34.44 -0.26 -14.05 16 20 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 23 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 30 H 0.12 0.86 8.05 -51.93 -0.42 0.44 16 31 H 0.11 1.15 5.44 -51.93 -0.28 0.87 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.12 1.31 8.04 -52.49 -0.42 0.88 16 36 H 0.08 1.07 8.00 -51.93 -0.42 0.66 16 37 H 0.03 0.42 6.70 -51.93 -0.35 0.07 16 38 H 0.34 4.59 4.95 -39.29 -0.19 4.40 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 42 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 43 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 46 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 391.84 15.07 5.91 5.91 Total: -1.00 -31.94 391.84 -9.18 -41.12 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.01 Total: 2.09 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.43 Total: -17.20 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.08 Total: -36.50 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.71 Total: -11.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.94 -9.18 -41.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848578668.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.705 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds