Wall clock time and date at job start Tue Mar 31 2020 12:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99694 * 2 1 4 4 O 1.20826 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00151 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47327 * 180.02562 * 5 3 2 7 7 C 1.38260 * 119.99559 * 264.99239 * 6 5 3 8 8 C 1.38212 * 119.99650 * 179.71963 * 7 6 5 9 9 C 1.38255 * 120.00300 * 0.28729 * 8 7 6 10 10 C 1.38216 * 119.99744 * 359.97134 * 9 8 7 11 11 C 1.38208 * 120.00333 * 85.19090 * 6 5 3 12 12 C 1.50698 * 120.00186 * 0.03695 * 11 6 5 13 13 N 1.46897 * 109.46930 * 80.17218 * 12 11 6 14 14 C 1.46908 * 111.00271 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47551 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47183 * 300.00165 * 15 14 13 17 17 C 1.53010 * 109.46995 * 59.99720 * 15 14 13 18 18 C 1.52995 * 109.47405 * 179.97438 * 15 14 13 19 19 C 1.50695 * 109.47085 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00597 * 0.02562 * 19 18 15 21 21 C 1.37882 * 119.99794 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99748 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99940 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47220 * 60.00260 * 23 21 19 25 25 H 1.48503 * 109.47373 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47531 * 300.00471 * 23 21 19 27 27 H 1.09005 * 109.47281 * 60.00130 * 1 2 3 28 28 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47494 * 300.00150 * 1 2 3 30 30 H 1.09005 * 109.47523 * 59.99760 * 5 3 2 31 31 H 1.09000 * 109.46991 * 299.99800 * 5 3 2 32 32 H 1.08002 * 120.00476 * 0.02562 * 7 6 5 33 33 H 1.07999 * 119.99941 * 180.25946 * 8 7 6 34 34 H 1.08005 * 120.00230 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.99715 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47640 * 200.17138 * 12 11 6 37 37 H 1.09000 * 109.47091 * 320.17597 * 12 11 6 38 38 H 1.00897 * 111.00432 * 303.95277 * 13 12 11 39 39 H 1.08997 * 109.46519 * 300.00264 * 14 13 12 40 40 H 1.09003 * 109.47086 * 59.99731 * 14 13 12 41 41 H 1.09002 * 109.47482 * 59.99432 * 16 15 14 42 42 H 1.08998 * 109.47314 * 179.97438 * 16 15 14 43 43 H 1.09007 * 109.47095 * 300.00068 * 16 15 14 44 44 H 1.08996 * 109.46799 * 60.00233 * 17 15 14 45 45 H 1.09002 * 109.46854 * 180.02562 * 17 15 14 46 46 H 1.09002 * 109.46905 * 300.00100 * 17 15 14 47 47 H 1.08996 * 109.47275 * 300.00310 * 18 15 14 48 48 H 1.09003 * 109.46987 * 59.99758 * 18 15 14 49 49 H 0.97000 * 119.99639 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9934 2.7202 0.0002 7 6 4.2891 3.3542 -1.1924 8 6 4.6753 4.6812 -1.1922 9 6 4.7717 5.3730 0.0009 10 6 4.4813 4.7377 1.1935 11 6 4.0936 3.4106 1.1932 12 6 3.7765 2.7181 2.4936 13 7 4.9293 1.9091 2.9113 14 6 4.6556 1.2172 4.1780 15 6 5.8765 0.3874 4.5801 16 6 6.1739 -0.6438 3.4896 17 6 7.0852 1.3095 4.7533 18 6 5.5917 -0.3327 5.8996 19 6 6.7941 -1.1504 6.2953 20 1 7.6736 -1.1558 5.6685 21 6 6.7717 -1.8911 7.4580 22 7 5.7009 -1.8843 8.2215 23 14 8.2618 -2.9054 7.9481 24 1 9.4360 -2.0116 8.1147 25 1 7.9859 -3.6033 9.2296 26 1 8.5486 -3.9072 6.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9557 0.7811 -0.8908 31 1 3.9563 0.7808 0.8892 32 1 4.2135 2.8139 -2.1245 33 1 4.9022 5.1777 -2.1241 34 1 5.0740 6.4099 0.0010 35 1 4.5570 5.2780 2.1256 36 1 3.5592 3.4634 3.2587 37 1 2.9089 2.0720 2.3589 38 1 5.1910 1.2532 2.1907 39 1 4.4442 1.9519 4.9549 40 1 3.7943 0.5607 4.0547 41 1 6.3769 -0.1305 2.5497 42 1 7.0440 -1.2346 3.7758 43 1 5.3128 -1.3006 3.3661 44 1 6.8734 2.0441 5.5302 45 1 7.9552 0.7182 5.0393 46 1 7.2883 1.8228 3.8134 47 1 5.3801 0.4022 6.6763 48 1 4.7305 -0.9894 5.7766 49 1 5.6850 -2.4056 9.0393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848578668.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:36 Heat of formation + Delta-G solvation = -94.906731 kcal Electronic energy + Delta-G solvation = -27247.768489 eV Core-core repulsion = 23559.421826 eV Total energy + Delta-G solvation = -3688.346663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77946 -40.37174 -39.06050 -37.55365 -36.07842 -34.40456 -33.80818 -31.95358 -29.84816 -29.00637 -27.94857 -27.87634 -27.25401 -25.69957 -23.91139 -23.37637 -22.40413 -21.30118 -19.55771 -18.75016 -18.31647 -17.83880 -17.80238 -17.14153 -16.81263 -16.61113 -16.15653 -15.87205 -15.58789 -15.24455 -14.71001 -14.64307 -14.48573 -14.29868 -14.09545 -14.01993 -13.84377 -13.39858 -13.24277 -13.18497 -13.13041 -12.96992 -12.75053 -12.70563 -12.43876 -12.22930 -12.13214 -11.98104 -11.89507 -11.85564 -11.78335 -11.65469 -11.37088 -10.85802 -10.75260 -10.48416 -9.72922 -9.66498 -9.31840 -8.12399 -6.19399 0.33523 0.50872 1.09550 1.42395 1.44618 1.51794 1.78702 2.45215 2.82107 3.21624 3.34283 3.56880 3.80935 3.91611 3.95936 4.03430 4.17003 4.21941 4.25010 4.26678 4.30178 4.37058 4.39211 4.45543 4.58619 4.65724 4.68002 4.75848 4.79473 4.82404 4.95686 5.09345 5.09596 5.15252 5.22333 5.23595 5.32983 5.53274 5.55670 5.55731 5.60107 5.62599 5.65673 5.70559 5.88217 5.93405 5.97653 6.13132 6.37627 6.44802 6.65505 6.95652 7.47927 8.99828 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.003040 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.823102 B = 9208.499258 C =10409.879951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.528 6.528 5 C -0.076 4.076 6 C -0.086 4.086 7 C -0.111 4.111 8 C -0.124 4.124 9 C -0.120 4.120 10 C -0.116 4.116 11 C -0.074 4.074 12 C 0.099 3.901 13 N -0.670 5.670 14 C 0.080 3.920 15 C -0.054 4.054 16 C -0.124 4.124 17 C -0.106 4.106 18 C 0.041 3.959 19 C -0.514 4.514 20 H 0.067 0.933 21 C -0.004 4.004 22 N -0.939 5.939 23 Si 0.956 3.044 24 H -0.269 1.269 25 H -0.289 1.289 26 H -0.266 1.266 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.055 0.945 30 H 0.148 0.852 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.343 0.657 39 H 0.058 0.942 40 H 0.018 0.982 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.039 0.961 44 H 0.029 0.971 45 H 0.039 0.961 46 H 0.067 0.933 47 H -0.017 1.017 48 H -0.016 1.016 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 9.566 -22.834 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.306 3.694 4 O -0.417 6.417 5 C -0.113 4.113 6 C -0.086 4.086 7 C -0.128 4.128 8 C -0.142 4.142 9 C -0.137 4.137 10 C -0.135 4.135 11 C -0.074 4.074 12 C -0.030 4.030 13 N -0.303 5.303 14 C -0.049 4.049 15 C -0.055 4.055 16 C -0.181 4.181 17 C -0.164 4.164 18 C 0.003 3.997 19 C -0.552 4.552 20 H 0.085 0.915 21 C -0.201 4.201 22 N -0.580 5.580 23 Si 0.781 3.219 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.191 1.191 27 H 0.086 0.914 28 H 0.147 0.853 29 H 0.074 0.926 30 H 0.166 0.834 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.164 0.836 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.402 10.297 -22.369 25.211 hybrid contribution -0.627 -1.264 0.891 1.668 sum -6.029 9.033 -21.478 24.068 Atomic orbital electron populations 1.23525 0.74914 1.05616 1.02418 1.86516 1.24944 1.32976 1.83800 1.24013 0.92559 0.81192 0.71624 1.90674 1.67804 1.37180 1.46070 1.20468 0.86893 0.95921 1.08059 1.19238 1.01504 0.94138 0.93749 1.21257 0.98721 0.95588 0.97267 1.21439 0.99412 0.94336 0.99045 1.21462 0.99130 1.00948 0.92209 1.21197 0.99066 0.93992 0.99228 1.19636 0.99437 0.94780 0.93551 1.20818 0.91301 0.96490 0.94348 1.60621 1.35939 1.28459 1.05307 1.21879 0.96055 0.95441 0.91550 1.20492 0.94645 0.94735 0.95612 1.21703 1.01117 0.97986 0.97289 1.21499 0.96813 0.97616 1.00431 1.18991 0.95212 0.93575 0.91890 1.21594 1.01070 1.26342 1.06200 0.91469 1.25921 0.98763 0.98487 0.96925 1.70107 1.30342 1.42995 1.14569 0.85638 0.79828 0.79015 0.77406 1.19377 1.21489 1.19124 0.91420 0.85261 0.92621 0.83448 0.87274 0.83930 0.83475 0.83921 0.85535 0.90495 0.95894 0.83567 0.92374 0.96370 0.91395 0.93213 0.94201 0.95198 0.94153 0.91438 0.99891 0.99752 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.55 113.37 1.20 1.65 16 2 O -0.37 -7.77 10.57 -51.39 -0.54 -8.32 16 3 C 0.46 10.65 7.18 71.23 0.51 11.16 16 4 O -0.53 -15.17 15.78 21.96 0.35 -14.82 16 5 C -0.08 -1.40 5.28 29.10 0.15 -1.25 16 6 C -0.09 -1.80 4.37 -19.87 -0.09 -1.89 16 7 C -0.11 -1.95 9.68 22.27 0.22 -1.74 16 8 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 9 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 10 C -0.12 -2.55 9.67 22.27 0.22 -2.34 16 11 C -0.07 -1.76 5.39 -19.87 -0.11 -1.86 16 12 C 0.10 2.59 5.07 85.56 0.43 3.03 16 13 N -0.67 -18.68 5.69 -517.93 -2.95 -21.62 16 14 C 0.08 2.75 4.65 86.30 0.40 3.15 16 15 C -0.05 -2.14 0.60 -52.18 -0.03 -2.18 16 16 C -0.12 -4.34 7.89 71.98 0.57 -3.77 16 17 C -0.11 -4.03 8.06 71.99 0.58 -3.45 16 18 C 0.04 2.12 4.04 29.84 0.12 2.24 16 19 C -0.51 -28.32 7.65 25.60 0.20 -28.12 16 20 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 21 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 22 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 23 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H 0.07 1.00 8.13 -2.38 -0.02 0.99 16 28 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 30 H 0.15 1.73 8.05 -2.38 -0.02 1.71 16 31 H 0.11 2.07 5.44 -2.39 -0.01 2.06 16 32 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.13 2.59 8.04 -2.91 -0.02 2.57 16 36 H 0.08 2.05 8.00 -2.39 -0.02 2.03 16 37 H 0.02 0.64 6.70 -2.39 -0.02 0.62 16 38 H 0.34 8.73 4.95 -89.70 -0.44 8.28 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 1.90 6.57 -2.39 -0.02 1.88 16 42 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 43 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 46 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 47 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 48 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 49 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -70.16 391.84 4.93 -65.22 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.49 Total: 19.34 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 5.28 Total: -28.89 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -2.66 Total: -78.87 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.20 Total: -23.14 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.16 4.93 -65.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848578668.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.683 kcal (2) G-P(sol) polarization free energy of solvation -70.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds