Wall clock time and date at job start Tue Mar 31 2020 13:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47621 * 2 1 4 4 C 1.52999 * 109.47448 * 185.00345 * 3 2 1 5 5 H 1.09003 * 109.46700 * 57.66308 * 4 3 2 6 6 C 1.52994 * 109.47029 * 177.66351 * 4 3 2 7 7 N 1.46509 * 109.47007 * 179.62421 * 6 4 3 8 8 C 1.34774 * 119.99599 * 176.71612 * 7 6 4 9 9 O 1.21280 * 120.00702 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99383 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.46863 * 180.02562 * 10 8 7 12 12 C 1.37640 * 120.12940 * 265.00187 * 11 10 8 13 13 C 1.38616 * 120.25130 * 179.97438 * 12 11 10 14 14 C 1.38655 * 120.49980 * 0.02562 * 13 12 11 15 15 C 1.37605 * 120.24877 * 0.02562 * 14 13 12 16 16 C 1.40697 * 120.12900 * 84.72539 * 11 10 8 17 17 C 1.41403 * 120.24348 * 0.02562 * 16 11 10 18 18 H 1.07999 * 119.99284 * 335.08021 * 17 16 11 19 19 C 1.39938 * 120.00217 * 155.07931 * 17 16 11 20 20 N 1.30831 * 120.00095 * 342.59712 * 19 17 16 21 21 Si 1.86796 * 120.00229 * 162.60391 * 19 17 16 22 22 H 1.48500 * 109.47389 * 59.99439 * 21 19 17 23 23 H 1.48500 * 109.47322 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47047 * 299.99936 * 21 19 17 25 25 O 1.42898 * 109.47046 * 297.66363 * 4 3 2 26 26 C 1.42904 * 113.99865 * 128.71826 * 25 4 3 27 27 C 1.52999 * 109.47133 * 180.29691 * 26 25 4 28 28 H 1.09003 * 109.46686 * 299.99828 * 1 2 3 29 29 H 1.09001 * 109.47437 * 59.99745 * 1 2 3 30 30 H 1.09002 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46754 * 239.99636 * 2 1 3 32 32 H 1.09001 * 109.47437 * 120.00255 * 2 1 3 33 33 H 1.08998 * 109.46909 * 65.00141 * 3 2 1 34 34 H 1.09005 * 109.46891 * 305.00332 * 3 2 1 35 35 H 1.09004 * 109.47551 * 299.61973 * 6 4 3 36 36 H 1.08996 * 109.47411 * 59.62693 * 6 4 3 37 37 H 0.96991 * 119.99732 * 356.71736 * 7 6 4 38 38 H 1.08994 * 109.47539 * 300.00133 * 10 8 7 39 39 H 1.09002 * 109.47148 * 60.00619 * 10 8 7 40 40 H 1.08005 * 119.87486 * 0.02562 * 12 11 10 41 41 H 1.07994 * 119.74737 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.87837 * 180.02562 * 14 13 12 43 43 H 1.07999 * 120.12749 * 179.97438 * 15 14 13 44 44 H 0.96995 * 119.99863 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.47307 * 60.29505 * 26 25 4 46 46 H 1.09003 * 109.47237 * 300.29700 * 26 25 4 47 47 H 1.08999 * 109.47127 * 180.02562 * 27 26 25 48 48 H 1.08994 * 109.47000 * 300.00323 * 27 26 25 49 49 H 1.09004 * 109.46836 * 60.00026 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4442 -0.1258 5 1 3.8548 0.9204 -1.0367 6 6 4.0700 2.8872 -0.1844 7 7 5.5309 2.8890 -0.2958 8 6 6.1950 4.0541 -0.4298 9 8 5.5834 5.1011 -0.4576 10 6 7.6977 4.0560 -0.5438 11 6 8.1892 5.4739 -0.6822 12 6 8.4228 6.0054 -1.9301 13 6 8.8744 7.3095 -2.0603 14 6 9.0963 8.0927 -0.9379 15 6 8.8705 7.5817 0.3197 16 6 8.4054 6.2613 0.4636 17 6 8.1638 5.7276 1.7506 18 1 7.4635 4.9150 1.8753 19 6 8.8320 6.2524 2.8625 20 7 9.9067 6.9799 2.6966 21 14 8.1897 5.9143 4.5836 22 1 8.1795 4.4498 4.8294 23 1 9.0691 6.5778 5.5794 24 1 6.8093 6.4469 4.7103 25 8 4.1369 0.7848 1.0055 26 6 5.0772 -0.2371 0.6686 27 6 5.6168 -0.8762 1.9497 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7518 1.9297 0.9314 34 1 1.6054 1.9815 -0.8418 35 1 3.6390 3.3882 -1.0512 36 1 3.7743 3.4129 0.7235 37 1 6.0200 2.0517 -0.2733 38 1 8.1305 3.6074 0.3503 39 1 7.9963 3.4805 -1.4201 40 1 8.2528 5.4045 -2.8113 41 1 9.0554 7.7182 -3.0433 42 1 9.4478 9.1077 -1.0510 43 1 9.0444 8.1934 1.1926 44 1 10.3696 7.3439 3.4673 45 1 5.9019 0.1993 0.1051 46 1 4.5854 -0.9979 0.0623 47 1 6.3343 -1.6554 1.6927 48 1 6.1086 -0.1156 2.5559 49 1 4.7921 -1.3127 2.5132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862417232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:23 Heat of formation + Delta-G solvation = -92.806896 kcal Electronic energy + Delta-G solvation = -27044.371095 eV Core-core repulsion = 23356.115487 eV Total energy + Delta-G solvation = -3688.255608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.55131 -38.53511 -37.19360 -35.15609 -34.06879 -33.57385 -31.89466 -31.43506 -29.67693 -29.37815 -27.22049 -25.67969 -24.75525 -23.07611 -22.01798 -21.28824 -20.87907 -20.37447 -19.23612 -17.25970 -17.13694 -16.63103 -15.88665 -15.54211 -15.34266 -14.97919 -14.75474 -14.53353 -14.21942 -13.71100 -13.59758 -13.48575 -13.40582 -12.99726 -12.90314 -12.53936 -12.34102 -12.20577 -12.13208 -11.70910 -11.68566 -11.51850 -11.36865 -11.16554 -11.08389 -11.06408 -10.93550 -10.91395 -10.78321 -10.63721 -10.35596 -9.68689 -9.43435 -9.32429 -9.10182 -9.05694 -8.64691 -7.26067 -7.24258 -6.69099 -4.28276 2.85153 3.02929 3.10032 3.14603 3.33573 3.39484 3.48458 3.67465 3.98648 4.50928 4.68977 4.72046 4.75805 4.86322 4.87725 5.05333 5.11348 5.15966 5.33434 5.39240 5.48500 5.52595 5.59426 5.67774 5.72929 5.74860 5.84935 5.85611 5.94701 5.97317 6.03438 6.08353 6.10767 6.22566 6.33476 6.48289 6.56392 6.83031 6.85937 7.08466 7.13970 7.35634 7.48222 7.69607 7.93705 8.01450 8.13739 8.18887 8.37258 8.70659 8.93090 8.97509 9.07476 10.24729 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003459 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.621644 B = 8093.725277 C = 9273.384449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.123 4.123 4 C 0.081 3.919 5 H 0.067 0.933 6 C 0.107 3.893 7 N -0.743 5.743 8 C 0.514 3.486 9 O -0.520 6.520 10 C -0.071 4.071 11 C -0.181 4.181 12 C -0.081 4.081 13 C -0.242 4.242 14 C -0.107 4.107 15 C -0.161 4.161 16 C 0.129 3.871 17 C -0.455 4.455 18 H 0.074 0.926 19 C 0.078 3.922 20 N -0.794 5.794 21 Si 0.902 3.098 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.264 1.264 25 O -0.374 6.374 26 C 0.057 3.943 27 C -0.153 4.153 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.391 0.609 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.280 0.720 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 -16.068 -3.211 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.161 4.161 4 C 0.022 3.978 5 H 0.085 0.915 6 C -0.017 4.017 7 N -0.398 5.398 8 C 0.301 3.699 9 O -0.394 6.394 10 C -0.110 4.110 11 C -0.183 4.183 12 C -0.099 4.099 13 C -0.261 4.261 14 C -0.125 4.125 15 C -0.181 4.181 16 C 0.126 3.874 17 C -0.485 4.485 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.420 5.420 21 Si 0.727 3.273 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 O -0.293 6.293 26 C -0.020 4.020 27 C -0.210 4.210 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.225 0.775 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.135 0.865 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.002 -15.103 -2.898 18.909 hybrid contribution 0.077 -0.556 0.562 0.794 sum -10.925 -15.658 -2.336 19.236 Atomic orbital electron populations 1.21773 0.95821 1.01487 1.01888 1.21455 0.95761 0.96501 1.02113 1.21804 0.93124 0.97766 1.03447 1.22411 0.93707 0.92386 0.89265 0.91519 1.21672 0.81659 0.95759 1.02609 1.46096 1.06705 1.09380 1.77626 1.21236 0.90896 0.82751 0.74989 1.90677 1.69754 1.31270 1.47712 1.20264 0.90076 0.98004 1.02700 1.19038 1.12100 0.93664 0.93530 1.20289 0.99574 0.95023 0.95040 1.20290 1.13538 0.95875 0.96390 1.20670 1.00731 0.97522 0.93611 1.21307 1.05203 0.95935 0.95611 1.17333 0.87779 0.90555 0.91692 1.19456 1.21469 1.16502 0.91053 0.90793 1.25876 0.93336 0.93358 1.01416 1.69823 1.12858 1.26301 1.33016 0.86461 0.80061 0.79595 0.81183 1.19037 1.20358 1.18856 1.87994 1.58867 1.51340 1.31140 1.22585 0.91586 0.89943 0.97902 1.21749 1.01165 1.00806 0.97273 0.92624 0.92787 0.92892 0.92493 0.91388 0.90614 0.90518 0.90903 0.91125 0.77482 0.88662 0.90782 0.89838 0.89720 0.89624 0.86472 0.90939 0.93574 0.93484 0.91151 0.91423 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.95 5.75 -26.73 -0.15 -1.10 16 3 C -0.12 -1.11 4.94 -26.73 -0.13 -1.24 16 4 C 0.08 0.84 2.40 -26.73 -0.06 0.77 16 5 H 0.07 0.60 7.62 -51.93 -0.40 0.20 16 6 C 0.11 1.48 5.37 -4.04 -0.02 1.46 16 7 N -0.74 -11.44 5.45 -60.29 -0.33 -11.77 16 8 C 0.51 10.38 7.45 -10.98 -0.08 10.30 16 9 O -0.52 -12.87 16.03 5.56 0.09 -12.78 16 10 C -0.07 -1.42 5.18 -29.03 -0.15 -1.58 16 11 C -0.18 -4.48 4.43 -103.91 -0.46 -4.94 16 12 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 13 C -0.24 -5.76 10.05 -39.29 -0.39 -6.16 16 14 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 15 C -0.16 -4.41 8.70 -38.87 -0.34 -4.75 16 16 C 0.13 3.53 5.57 -106.82 -0.60 2.94 16 17 C -0.46 -12.30 8.17 -37.74 -0.31 -12.60 16 18 H 0.07 1.96 6.63 -52.49 -0.35 1.61 16 19 C 0.08 1.99 5.15 -17.34 -0.09 1.90 16 20 N -0.79 -20.87 10.94 55.55 0.61 -20.26 16 21 Si 0.90 19.41 29.59 -169.99 -5.03 14.38 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 24 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 25 O -0.37 -4.29 9.29 -35.23 -0.33 -4.62 16 26 C 0.06 0.51 6.15 37.16 0.23 0.74 16 27 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.39 4.97 6.38 -40.82 -0.26 4.71 16 38 H 0.10 1.90 7.06 -51.93 -0.37 1.53 16 39 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 43 H 0.12 3.28 6.16 -52.49 -0.32 2.96 16 44 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 45 H 0.05 0.40 6.42 -51.93 -0.33 0.06 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -31.76 398.19 -9.91 -41.67 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.33 Total: 8.63 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.59 Total: -21.26 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.28 Total: -32.03 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.24 Total: -17.40 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.76 -9.91 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862417232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.137 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds