Wall clock time and date at job start Tue Mar 31 2020 13:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47621 * 2 1 4 4 C 1.52999 * 109.47448 * 185.00345 * 3 2 1 5 5 H 1.09003 * 109.46700 * 57.66308 * 4 3 2 6 6 C 1.52994 * 109.47029 * 177.66351 * 4 3 2 7 7 N 1.46509 * 109.47007 * 179.62421 * 6 4 3 8 8 C 1.34774 * 119.99599 * 176.71612 * 7 6 4 9 9 O 1.21280 * 120.00702 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99383 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.46863 * 180.02562 * 10 8 7 12 12 C 1.37640 * 120.12940 * 265.00187 * 11 10 8 13 13 C 1.38616 * 120.25130 * 179.97438 * 12 11 10 14 14 C 1.38655 * 120.49980 * 0.02562 * 13 12 11 15 15 C 1.37605 * 120.24877 * 0.02562 * 14 13 12 16 16 C 1.40697 * 120.12900 * 84.72539 * 11 10 8 17 17 C 1.41403 * 120.24348 * 0.02562 * 16 11 10 18 18 H 1.07999 * 119.99284 * 335.08021 * 17 16 11 19 19 C 1.39938 * 120.00217 * 155.07931 * 17 16 11 20 20 N 1.30831 * 120.00095 * 342.59712 * 19 17 16 21 21 Si 1.86796 * 120.00229 * 162.60391 * 19 17 16 22 22 H 1.48500 * 109.47389 * 59.99439 * 21 19 17 23 23 H 1.48500 * 109.47322 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47047 * 299.99936 * 21 19 17 25 25 O 1.42898 * 109.47046 * 297.66363 * 4 3 2 26 26 C 1.42904 * 113.99865 * 128.71826 * 25 4 3 27 27 C 1.52999 * 109.47133 * 180.29691 * 26 25 4 28 28 H 1.09003 * 109.46686 * 299.99828 * 1 2 3 29 29 H 1.09001 * 109.47437 * 59.99745 * 1 2 3 30 30 H 1.09002 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46754 * 239.99636 * 2 1 3 32 32 H 1.09001 * 109.47437 * 120.00255 * 2 1 3 33 33 H 1.08998 * 109.46909 * 65.00141 * 3 2 1 34 34 H 1.09005 * 109.46891 * 305.00332 * 3 2 1 35 35 H 1.09004 * 109.47551 * 299.61973 * 6 4 3 36 36 H 1.08996 * 109.47411 * 59.62693 * 6 4 3 37 37 H 0.96991 * 119.99732 * 356.71736 * 7 6 4 38 38 H 1.08994 * 109.47539 * 300.00133 * 10 8 7 39 39 H 1.09002 * 109.47148 * 60.00619 * 10 8 7 40 40 H 1.08005 * 119.87486 * 0.02562 * 12 11 10 41 41 H 1.07994 * 119.74737 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.87837 * 180.02562 * 14 13 12 43 43 H 1.07999 * 120.12749 * 179.97438 * 15 14 13 44 44 H 0.96995 * 119.99863 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.47307 * 60.29505 * 26 25 4 46 46 H 1.09003 * 109.47237 * 300.29700 * 26 25 4 47 47 H 1.08999 * 109.47127 * 180.02562 * 27 26 25 48 48 H 1.08994 * 109.47000 * 300.00323 * 27 26 25 49 49 H 1.09004 * 109.46836 * 60.00026 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4442 -0.1258 5 1 3.8548 0.9204 -1.0367 6 6 4.0700 2.8872 -0.1844 7 7 5.5309 2.8890 -0.2958 8 6 6.1950 4.0541 -0.4298 9 8 5.5834 5.1011 -0.4576 10 6 7.6977 4.0560 -0.5438 11 6 8.1892 5.4739 -0.6822 12 6 8.4228 6.0054 -1.9301 13 6 8.8744 7.3095 -2.0603 14 6 9.0963 8.0927 -0.9379 15 6 8.8705 7.5817 0.3197 16 6 8.4054 6.2613 0.4636 17 6 8.1638 5.7276 1.7506 18 1 7.4635 4.9150 1.8753 19 6 8.8320 6.2524 2.8625 20 7 9.9067 6.9799 2.6966 21 14 8.1897 5.9143 4.5836 22 1 8.1795 4.4498 4.8294 23 1 9.0691 6.5778 5.5794 24 1 6.8093 6.4469 4.7103 25 8 4.1369 0.7848 1.0055 26 6 5.0772 -0.2371 0.6686 27 6 5.6168 -0.8762 1.9497 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7518 1.9297 0.9314 34 1 1.6054 1.9815 -0.8418 35 1 3.6390 3.3882 -1.0512 36 1 3.7743 3.4129 0.7235 37 1 6.0200 2.0517 -0.2733 38 1 8.1305 3.6074 0.3503 39 1 7.9963 3.4805 -1.4201 40 1 8.2528 5.4045 -2.8113 41 1 9.0554 7.7182 -3.0433 42 1 9.4478 9.1077 -1.0510 43 1 9.0444 8.1934 1.1926 44 1 10.3696 7.3439 3.4673 45 1 5.9019 0.1993 0.1051 46 1 4.5854 -0.9979 0.0623 47 1 6.3343 -1.6554 1.6927 48 1 6.1086 -0.1156 2.5559 49 1 4.7921 -1.3127 2.5132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862417232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:22 Heat of formation + Delta-G solvation = -110.773799 kcal Electronic energy + Delta-G solvation = -27045.150198 eV Core-core repulsion = 23356.115487 eV Total energy + Delta-G solvation = -3689.034711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.92363 -39.73849 -38.94400 -35.92994 -35.51484 -35.31586 -33.49032 -32.41004 -31.34902 -30.57341 -28.71919 -27.17007 -26.32376 -23.79486 -22.94729 -22.80408 -22.23036 -21.80300 -20.88236 -19.08309 -18.09125 -17.99177 -17.38791 -17.02683 -16.43192 -16.31468 -16.18838 -15.62897 -15.48452 -15.25414 -15.14205 -14.52664 -14.39547 -14.34332 -14.22105 -13.96425 -13.52777 -13.37519 -13.29210 -12.92882 -12.88850 -12.82315 -12.76076 -12.63640 -12.49494 -12.41108 -12.12660 -12.06955 -11.83654 -11.75088 -11.46068 -11.32565 -11.21851 -11.02653 -10.85975 -10.38751 -10.04220 -9.23584 -9.16283 -8.61083 -6.29513 0.99471 1.13624 1.33627 1.43667 1.53178 1.82502 2.18398 2.33116 2.70264 2.77505 3.67242 3.74184 3.92111 4.03514 4.13675 4.21455 4.23251 4.33183 4.37219 4.40803 4.45205 4.52081 4.56830 4.62017 4.68081 4.71807 4.75106 4.79927 4.88361 4.95035 4.97497 5.05476 5.06786 5.08183 5.19200 5.26899 5.31170 5.37300 5.37692 5.48252 5.52856 5.55380 5.77190 6.03846 6.16858 6.21902 6.31562 6.42010 6.62025 6.74537 6.98825 7.11307 7.42415 8.34975 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003459 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.621644 B = 8093.725277 C = 9273.384449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.122 4.122 4 C 0.090 3.910 5 H 0.090 0.910 6 C 0.105 3.895 7 N -0.722 5.722 8 C 0.515 3.485 9 O -0.574 6.574 10 C -0.069 4.069 11 C -0.189 4.189 12 C -0.091 4.091 13 C -0.243 4.243 14 C -0.117 4.117 15 C -0.196 4.196 16 C 0.095 3.905 17 C -0.483 4.483 18 H 0.068 0.932 19 C 0.038 3.962 20 N -0.823 5.823 21 Si 0.968 3.032 22 H -0.254 1.254 23 H -0.263 1.263 24 H -0.273 1.273 25 O -0.395 6.395 26 C 0.048 3.952 27 C -0.152 4.152 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.407 0.593 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.287 0.713 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 -18.480 -4.373 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.160 4.160 4 C 0.032 3.968 5 H 0.108 0.892 6 C -0.019 4.019 7 N -0.377 5.377 8 C 0.303 3.697 9 O -0.452 6.452 10 C -0.109 4.109 11 C -0.191 4.191 12 C -0.109 4.109 13 C -0.263 4.263 14 C -0.135 4.135 15 C -0.216 4.216 16 C 0.093 3.907 17 C -0.513 4.513 18 H 0.086 0.914 19 C -0.177 4.177 20 N -0.449 5.449 21 Si 0.789 3.211 22 H -0.178 1.178 23 H -0.187 1.187 24 H -0.198 1.198 25 O -0.315 6.315 26 C -0.028 4.028 27 C -0.209 4.209 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.244 0.756 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.534 -17.575 -4.066 21.412 hybrid contribution 0.251 0.174 0.815 0.870 sum -11.283 -17.401 -3.251 20.992 Atomic orbital electron populations 1.21771 0.95241 1.02057 1.01884 1.21406 0.96229 0.95391 1.02263 1.21807 0.92183 0.98805 1.03190 1.22368 0.94305 0.90081 0.90047 0.89173 1.21821 0.80388 0.98296 1.01403 1.45884 1.07592 1.08727 1.75455 1.21180 0.90902 0.83121 0.74501 1.90658 1.70649 1.33336 1.50600 1.20283 0.90125 0.96008 1.04485 1.19528 1.10751 0.95544 0.93238 1.20743 0.98723 0.95483 0.95908 1.20724 1.12188 0.96009 0.97331 1.20954 1.00490 0.98773 0.93286 1.21324 1.07757 0.96444 0.96074 1.17736 0.88794 0.91126 0.93075 1.19582 1.22288 1.17372 0.92016 0.91368 1.26626 0.93162 0.92991 1.04875 1.69875 1.13689 1.27015 1.34362 0.85475 0.78878 0.80023 0.76729 1.17843 1.18745 1.19815 1.87992 1.59465 1.52054 1.31960 1.22797 0.91558 0.90003 0.98420 1.21769 1.01469 1.00740 0.96961 0.93194 0.92276 0.92045 0.91271 0.92226 0.92059 0.89477 0.90757 0.93738 0.75615 0.88773 0.86763 0.86395 0.86580 0.87639 0.88453 0.90285 0.93046 0.91328 0.89144 0.93392 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.57 5.75 30.59 0.18 -1.39 16 3 C -0.12 -2.01 4.94 30.59 0.15 -1.86 16 4 C 0.09 1.71 2.40 30.59 0.07 1.78 16 5 H 0.09 1.31 7.62 -2.39 -0.02 1.30 16 6 C 0.11 2.83 5.37 86.38 0.46 3.30 16 7 N -0.72 -21.35 5.45 -463.05 -2.53 -23.88 16 8 C 0.51 20.56 7.45 87.66 0.65 21.22 16 9 O -0.57 -28.86 16.03 -3.03 -0.05 -28.91 16 10 C -0.07 -2.73 5.18 29.10 0.15 -2.57 16 11 C -0.19 -9.30 4.43 -19.40 -0.09 -9.38 16 12 C -0.09 -4.14 9.66 22.22 0.21 -3.92 16 13 C -0.24 -11.26 10.05 22.46 0.23 -11.04 16 14 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 15 C -0.20 -11.14 8.70 22.73 0.20 -10.94 16 16 C 0.09 5.35 5.57 -21.29 -0.12 5.23 16 17 C -0.48 -26.95 8.17 23.46 0.19 -26.75 16 18 H 0.07 3.74 6.63 -2.91 -0.02 3.72 16 19 C 0.04 2.01 5.15 85.25 0.44 2.45 16 20 N -0.82 -44.57 10.94 21.83 0.24 -44.33 16 21 Si 0.97 40.55 29.59 68.60 2.03 42.58 16 22 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 25 O -0.39 -8.44 9.29 -148.98 -1.38 -9.82 16 26 C 0.05 0.76 6.15 71.98 0.44 1.20 16 27 C -0.15 -2.35 10.28 71.98 0.74 -1.61 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.92 7.89 -2.39 -0.02 0.90 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.41 9.44 6.38 -92.71 -0.59 8.85 16 38 H 0.09 3.71 7.06 -2.39 -0.02 3.70 16 39 H 0.11 3.48 8.05 -2.39 -0.02 3.46 16 40 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 43 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 44 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 45 H 0.05 0.74 6.42 -2.39 -0.02 0.72 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -71.47 398.19 3.49 -67.98 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.33 Total: 37.46 kcal Atomic # 6 Polarization: -45.94 SS G_CDS: 4.85 Total: -41.09 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -2.29 Total: -68.21 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.43 Total: -38.73 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -71.47 3.49 -67.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862417232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.793 kcal (2) G-P(sol) polarization free energy of solvation -71.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds