Wall clock time and date at job start Tue Mar 31 2020 12:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99649 * 2 1 4 4 C 1.52997 * 109.47258 * 59.99836 * 3 2 1 5 5 C 1.53006 * 109.46880 * 299.99691 * 3 2 1 6 6 C 1.53001 * 109.46999 * 179.97438 * 3 2 1 7 7 C 1.53005 * 109.47061 * 64.99761 * 6 3 2 8 8 N 1.46506 * 109.46773 * 180.02562 * 7 6 3 9 9 C 1.34773 * 119.99707 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08991 * 109.47502 * 300.00288 * 1 2 3 29 29 H 1.09006 * 109.46705 * 60.00282 * 1 2 3 30 30 H 1.09003 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46966 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47167 * 299.99682 * 4 3 2 33 33 H 1.08999 * 109.47079 * 60.00325 * 4 3 2 34 34 H 1.09003 * 109.47205 * 299.99776 * 5 3 2 35 35 H 1.09000 * 109.47361 * 60.00431 * 5 3 2 36 36 H 1.09008 * 109.46615 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47237 * 304.99827 * 6 3 2 38 38 H 1.09003 * 109.47449 * 184.99762 * 6 3 2 39 39 H 1.08999 * 109.47178 * 60.00718 * 7 6 3 40 40 H 1.08992 * 109.47341 * 299.99903 * 7 6 3 41 41 H 0.97001 * 120.00254 * 0.02562 * 8 7 6 42 42 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 43 43 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 44 44 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 45 45 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 46 46 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 47 47 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 48 48 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0647 -1.2493 6 6 3.5354 1.1848 0.0006 7 6 3.9962 0.5365 -1.3064 8 7 5.4567 0.4203 -1.3055 9 6 6.0899 -0.1254 -2.3626 10 8 5.4508 -0.5199 -3.3149 11 6 7.5922 -0.2443 -2.3619 12 6 8.0530 -0.8927 -3.6689 13 1 7.6485 -0.3351 -4.5136 14 6 7.5606 -2.3159 -3.7245 15 1 7.4229 -2.8758 -2.8113 16 6 7.2858 -2.9032 -4.9413 17 7 7.5743 -2.2700 -6.0572 18 14 6.5038 -4.5985 -5.0047 19 1 6.3122 -5.0026 -6.4208 20 1 7.3894 -5.5780 -4.3254 21 1 5.1873 -4.5623 -4.3184 22 6 9.5587 -0.8793 -3.7328 23 6 10.2960 -1.6000 -2.8120 24 6 11.6769 -1.5909 -2.8729 25 6 12.3208 -0.8544 -3.8497 26 6 11.5835 -0.1295 -4.7672 27 6 10.2025 -0.1418 -4.7086 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0016 3.0607 1.2489 32 1 0.4721 2.1509 1.2491 33 1 1.8804 1.5239 2.1392 34 1 1.8804 1.5238 -2.1393 35 1 0.4721 2.1508 -1.2494 36 1 2.0024 3.0604 -1.2495 37 1 3.8508 0.5687 0.8427 38 1 3.9784 2.1767 0.0902 39 1 3.6810 1.1526 -2.1485 40 1 3.5533 -0.4554 -1.3960 41 1 5.9678 0.7355 -0.5437 42 1 7.9075 -0.8600 -1.5196 43 1 8.0352 0.7476 -2.2730 44 1 7.9090 -1.3602 -6.0260 45 1 9.7930 -2.1724 -2.0466 46 1 12.2529 -2.1570 -2.1558 47 1 13.3998 -0.8452 -3.8956 48 1 12.0866 0.4462 -5.5300 49 1 9.6266 0.4242 -5.4257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871257521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:58 Heat of formation + Delta-G solvation = -74.805292 kcal Electronic energy + Delta-G solvation = -26939.499665 eV Core-core repulsion = 23252.024666 eV Total energy + Delta-G solvation = -3687.474999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.58134 -38.93485 -38.18964 -35.19484 -34.13582 -33.03336 -31.29823 -30.08670 -29.65252 -28.47420 -27.76065 -26.87560 -25.01378 -23.25967 -22.42158 -21.62878 -20.33245 -20.01782 -19.33007 -16.96352 -16.58264 -16.27195 -15.97321 -15.78726 -15.30641 -15.14994 -14.83579 -14.47328 -14.07945 -13.76024 -13.65386 -13.57225 -13.27199 -12.85244 -12.70229 -12.60615 -12.36879 -12.27486 -12.26300 -11.92272 -11.83357 -11.72138 -11.54713 -11.36796 -11.11259 -10.78297 -10.66119 -10.65254 -10.40040 -10.09799 -9.99748 -9.73995 -9.60589 -8.95016 -8.59702 -8.47511 -8.21042 -8.11423 -7.59969 -6.18456 -3.85566 2.21670 2.27658 3.52916 3.55172 3.56950 3.60863 3.72614 3.75294 4.53260 4.57018 4.64691 4.70852 4.77609 5.08419 5.13063 5.17336 5.19440 5.31669 5.34755 5.47137 5.49936 5.51943 5.56758 5.61887 5.66029 5.72205 5.78818 5.79634 5.85180 5.95666 6.04335 6.12023 6.18094 6.19658 6.29144 6.34417 6.45698 6.73482 6.82333 6.96404 6.97526 7.05754 7.23738 7.25588 7.41684 7.76058 7.88814 8.12035 8.28087 8.55978 9.02495 9.11078 9.83557 11.22018 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003136 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.296765 B = 8925.886435 C =10225.870404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.114 3.886 4 C -0.177 4.177 5 C -0.185 4.185 6 C -0.115 4.115 7 C 0.122 3.878 8 N -0.751 5.751 9 C 0.512 3.488 10 O -0.500 6.500 11 C -0.117 4.117 12 C 0.072 3.928 13 H 0.051 0.949 14 C -0.567 4.567 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.062 2.938 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.288 1.288 22 C -0.030 4.030 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.154 4.154 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.391 0.609 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.269 0.731 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 10.422 14.319 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.074 3.926 4 C -0.234 4.234 5 C -0.242 4.242 6 C -0.153 4.153 7 C -0.002 4.002 8 N -0.406 5.406 9 C 0.298 3.702 10 O -0.371 6.371 11 C -0.158 4.158 12 C 0.053 3.947 13 H 0.069 0.931 14 C -0.604 4.604 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.542 5.542 18 Si 0.891 3.109 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.215 1.215 22 C -0.031 4.031 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.172 4.172 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.224 0.776 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.719 8.742 12.519 17.110 hybrid contribution 0.499 1.486 1.467 2.147 sum -7.219 10.228 13.986 18.771 Atomic orbital electron populations 1.22784 0.81700 1.02691 0.99955 1.88032 1.19357 1.27014 1.94964 1.21412 0.93266 0.83545 0.94340 1.22410 1.01823 1.00923 0.98273 1.22533 1.01666 1.01133 0.98878 1.21770 0.92752 1.01827 0.98932 1.21248 0.81036 1.01455 0.96416 1.46189 1.06933 1.65991 1.21528 1.20835 0.90884 0.76577 0.81865 1.90747 1.67764 1.44647 1.33951 1.21684 0.90980 1.00533 1.02563 1.17864 0.86396 0.98021 0.92426 0.93118 1.21527 1.47101 0.96859 0.94931 0.93690 1.25569 0.94585 1.04873 0.92269 1.70758 1.41389 1.13253 1.28802 0.83656 0.76400 0.74970 0.75857 1.20971 1.21767 1.21479 1.20838 0.98488 0.91451 0.92285 1.20921 0.92861 0.99027 0.99827 1.21011 0.94913 0.99939 0.98908 1.20820 0.98585 1.00401 0.97373 1.20960 0.94342 1.00162 0.98797 1.21067 0.93926 1.00470 0.99397 0.94031 0.93760 0.89742 0.91403 0.92121 0.91669 0.90737 0.92234 0.91369 0.90492 0.90142 0.91921 0.91125 0.77633 0.90343 0.91773 0.91910 0.86735 0.87469 0.87612 0.87488 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.21 101.05 1.03 1.25 16 2 O -0.37 -4.47 9.88 -35.23 -0.35 -4.82 16 3 C 0.11 1.12 0.82 -90.62 -0.07 1.05 16 4 C -0.18 -1.33 8.25 37.16 0.31 -1.03 16 5 C -0.18 -1.73 7.76 37.16 0.29 -1.44 16 6 C -0.12 -1.18 4.62 -26.73 -0.12 -1.30 16 7 C 0.12 1.76 5.08 -4.04 -0.02 1.74 16 8 N -0.75 -11.54 5.56 -60.29 -0.33 -11.87 16 9 C 0.51 10.54 7.58 -10.99 -0.08 10.45 16 10 O -0.50 -12.93 15.02 5.55 0.08 -12.85 16 11 C -0.12 -2.32 4.94 -27.88 -0.14 -2.46 16 12 C 0.07 1.76 1.31 -92.92 -0.12 1.63 16 13 H 0.05 1.39 6.23 -51.93 -0.32 1.07 16 14 C -0.57 -15.73 6.40 -34.44 -0.22 -15.95 16 15 H 0.04 1.26 7.82 -52.49 -0.41 0.84 16 16 C 0.03 0.96 5.45 -17.82 -0.10 0.86 16 17 N -0.91 -28.11 13.63 55.43 0.76 -27.36 16 18 Si 1.06 26.88 29.91 -169.99 -5.08 21.79 16 19 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 23 C -0.11 -2.24 8.88 -39.59 -0.35 -2.59 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 26 C -0.12 -2.32 10.05 -39.59 -0.40 -2.71 16 27 C -0.13 -2.77 9.67 -39.59 -0.38 -3.15 16 28 H 0.04 0.30 6.42 -51.93 -0.33 -0.03 16 29 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.84 6.35 -51.93 -0.33 0.51 16 35 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 36 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.95 6.35 -51.93 -0.33 0.62 16 40 H 0.07 1.22 7.82 -51.93 -0.41 0.81 16 41 H 0.39 4.62 8.47 -40.82 -0.35 4.27 16 42 H 0.08 1.45 7.87 -51.93 -0.41 1.04 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.27 8.26 6.68 -40.82 -0.27 7.98 16 45 H 0.11 2.32 7.80 -52.48 -0.41 1.91 16 46 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 47 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 49 H 0.11 2.30 7.95 -52.49 -0.42 1.89 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -34.80 391.64 -8.73 -43.53 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.02 Total: 6.37 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.68 Total: -20.69 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.42 Total: -39.23 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.26 Total: -17.67 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -5.08 Total: 21.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.80 -8.73 -43.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871257521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.277 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds