Wall clock time and date at job start Tue Mar 31 2020 12:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99649 * 2 1 4 4 C 1.52997 * 109.47258 * 59.99836 * 3 2 1 5 5 C 1.53006 * 109.46880 * 299.99691 * 3 2 1 6 6 C 1.53001 * 109.46999 * 179.97438 * 3 2 1 7 7 C 1.53005 * 109.47061 * 64.99761 * 6 3 2 8 8 N 1.46506 * 109.46773 * 180.02562 * 7 6 3 9 9 C 1.34773 * 119.99707 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08991 * 109.47502 * 300.00288 * 1 2 3 29 29 H 1.09006 * 109.46705 * 60.00282 * 1 2 3 30 30 H 1.09003 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46966 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47167 * 299.99682 * 4 3 2 33 33 H 1.08999 * 109.47079 * 60.00325 * 4 3 2 34 34 H 1.09003 * 109.47205 * 299.99776 * 5 3 2 35 35 H 1.09000 * 109.47361 * 60.00431 * 5 3 2 36 36 H 1.09008 * 109.46615 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.47237 * 304.99827 * 6 3 2 38 38 H 1.09003 * 109.47449 * 184.99762 * 6 3 2 39 39 H 1.08999 * 109.47178 * 60.00718 * 7 6 3 40 40 H 1.08992 * 109.47341 * 299.99903 * 7 6 3 41 41 H 0.97001 * 120.00254 * 0.02562 * 8 7 6 42 42 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 43 43 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 44 44 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 45 45 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 46 46 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 47 47 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 48 48 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0647 -1.2493 6 6 3.5354 1.1848 0.0006 7 6 3.9962 0.5365 -1.3064 8 7 5.4567 0.4203 -1.3055 9 6 6.0899 -0.1254 -2.3626 10 8 5.4508 -0.5199 -3.3149 11 6 7.5922 -0.2443 -2.3619 12 6 8.0530 -0.8927 -3.6689 13 1 7.6485 -0.3351 -4.5136 14 6 7.5606 -2.3159 -3.7245 15 1 7.4229 -2.8758 -2.8113 16 6 7.2858 -2.9032 -4.9413 17 7 7.5743 -2.2700 -6.0572 18 14 6.5038 -4.5985 -5.0047 19 1 6.3122 -5.0026 -6.4208 20 1 7.3894 -5.5780 -4.3254 21 1 5.1873 -4.5623 -4.3184 22 6 9.5587 -0.8793 -3.7328 23 6 10.2960 -1.6000 -2.8120 24 6 11.6769 -1.5909 -2.8729 25 6 12.3208 -0.8544 -3.8497 26 6 11.5835 -0.1295 -4.7672 27 6 10.2025 -0.1418 -4.7086 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0016 3.0607 1.2489 32 1 0.4721 2.1509 1.2491 33 1 1.8804 1.5239 2.1392 34 1 1.8804 1.5238 -2.1393 35 1 0.4721 2.1508 -1.2494 36 1 2.0024 3.0604 -1.2495 37 1 3.8508 0.5687 0.8427 38 1 3.9784 2.1767 0.0902 39 1 3.6810 1.1526 -2.1485 40 1 3.5533 -0.4554 -1.3960 41 1 5.9678 0.7355 -0.5437 42 1 7.9075 -0.8600 -1.5196 43 1 8.0352 0.7476 -2.2730 44 1 7.9090 -1.3602 -6.0260 45 1 9.7930 -2.1724 -2.0466 46 1 12.2529 -2.1570 -2.1558 47 1 13.3998 -0.8452 -3.8956 48 1 12.0866 0.4462 -5.5300 49 1 9.6266 0.4242 -5.4257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871257521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:57 Heat of formation + Delta-G solvation = -97.255374 kcal Electronic energy + Delta-G solvation = -26940.473174 eV Core-core repulsion = 23252.024666 eV Total energy + Delta-G solvation = -3688.448508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86217 -40.16318 -39.68850 -36.54461 -35.89259 -34.14413 -33.25743 -31.60439 -30.95373 -29.74151 -28.45920 -27.73129 -26.83801 -24.89409 -23.72728 -23.16574 -21.84636 -21.27977 -20.63446 -18.82172 -18.00625 -17.44346 -17.17956 -17.11338 -16.53067 -16.17814 -16.01890 -15.91167 -15.65840 -15.61157 -15.09678 -14.65949 -14.48238 -14.37795 -14.03692 -13.97398 -13.81081 -13.42984 -13.31696 -13.14917 -12.94507 -12.74735 -12.70842 -12.60672 -12.52174 -12.34559 -12.08433 -11.96913 -11.94899 -11.71573 -11.48908 -11.42287 -10.73500 -10.61611 -10.49602 -10.31142 -9.94795 -9.63625 -9.26600 -8.45165 -6.10516 0.68355 0.74579 1.46284 1.58074 1.72717 1.90491 2.34686 2.60448 2.85672 3.11164 3.38688 3.72120 3.81323 4.00474 4.12026 4.13947 4.19844 4.28857 4.30604 4.35595 4.44180 4.44879 4.50035 4.50612 4.60758 4.64190 4.67578 4.68811 4.83252 4.85583 4.87176 4.87863 4.98177 5.02215 5.09985 5.17194 5.21988 5.24347 5.35911 5.41667 5.43358 5.60973 5.75108 5.83149 5.94985 6.24804 6.31150 6.33011 6.39829 6.74749 6.79506 7.54569 7.64928 8.95310 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003136 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.296765 B = 8925.886435 C =10225.870404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.407 6.407 3 C 0.108 3.892 4 C -0.170 4.170 5 C -0.184 4.184 6 C -0.105 4.105 7 C 0.125 3.875 8 N -0.726 5.726 9 C 0.508 3.492 10 O -0.564 6.564 11 C -0.111 4.111 12 C 0.073 3.927 13 H 0.006 0.994 14 C -0.557 4.557 15 H 0.038 0.962 16 C -0.025 4.025 17 N -0.942 5.942 18 Si 1.097 2.903 19 H -0.287 1.287 20 H -0.266 1.266 21 H -0.289 1.289 22 C -0.054 4.054 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.153 4.153 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.413 0.587 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.257 0.743 45 H 0.113 0.887 46 H 0.143 0.857 47 H 0.147 0.853 48 H 0.135 0.865 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.187 11.296 17.152 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.327 6.327 3 C 0.068 3.932 4 C -0.227 4.227 5 C -0.241 4.241 6 C -0.143 4.143 7 C 0.001 3.999 8 N -0.381 5.381 9 C 0.295 3.705 10 O -0.441 6.441 11 C -0.151 4.151 12 C 0.054 3.946 13 H 0.025 0.975 14 C -0.595 4.595 15 H 0.056 0.944 16 C -0.223 4.223 17 N -0.580 5.580 18 Si 0.922 3.078 19 H -0.213 1.213 20 H -0.191 1.191 21 H -0.215 1.215 22 C -0.055 4.055 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.142 4.142 27 C -0.172 4.172 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.250 0.750 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.132 0.868 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.153 0.847 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.029 9.645 15.437 19.175 hybrid contribution 0.019 1.303 0.660 1.461 sum -6.010 10.949 16.097 20.374 Atomic orbital electron populations 1.22922 0.80437 1.03240 1.01000 1.87990 1.20969 1.28541 1.95213 1.21570 0.92692 0.83213 0.95683 1.22348 1.02497 1.01274 0.96618 1.22523 1.02542 1.01437 0.97594 1.21772 0.93530 1.02868 0.96114 1.21260 0.79848 0.99898 0.98858 1.45931 1.07665 1.63871 1.20680 1.21056 0.91271 0.76087 0.82036 1.90728 1.68918 1.47903 1.36586 1.21585 0.90637 1.02119 1.00749 1.17692 0.88104 0.95820 0.92970 0.97525 1.21802 1.45430 0.98276 0.94042 0.94395 1.26713 0.95257 1.07735 0.92584 1.70847 1.44396 1.13170 1.29623 0.83192 0.76119 0.72617 0.75856 1.21278 1.19075 1.21511 1.20605 0.97110 0.93687 0.94101 1.21005 0.94299 0.99161 0.99693 1.21409 0.93901 0.99443 0.99426 1.21312 1.00642 0.98445 0.95823 1.21296 0.93106 1.00193 0.99655 1.21124 0.95534 1.01300 0.99214 0.92099 0.93503 0.89615 0.89708 0.91276 0.91592 0.93557 0.91117 0.89826 0.89913 0.87321 0.92930 0.94532 0.75041 0.88564 0.88759 0.93186 0.86848 0.83907 0.83506 0.84700 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.21 113.37 1.16 1.50 16 2 O -0.41 -9.65 9.88 -148.98 -1.47 -11.12 16 3 C 0.11 1.98 0.82 -10.79 -0.01 1.97 16 4 C -0.17 -2.09 8.25 71.98 0.59 -1.50 16 5 C -0.18 -3.31 7.76 71.98 0.56 -2.75 16 6 C -0.11 -2.00 4.62 30.60 0.14 -1.86 16 7 C 0.13 3.67 5.08 86.38 0.44 4.11 16 8 N -0.73 -22.13 5.56 -463.05 -2.57 -24.71 16 9 C 0.51 21.53 7.58 87.66 0.66 22.19 16 10 O -0.56 -31.03 15.02 -3.04 -0.05 -31.07 16 11 C -0.11 -4.43 4.94 29.85 0.15 -4.28 16 12 C 0.07 3.72 1.31 -12.29 -0.02 3.70 16 13 H 0.01 0.39 6.23 -2.39 -0.01 0.37 16 14 C -0.56 -32.05 6.40 25.60 0.16 -31.88 16 15 H 0.04 2.17 7.82 -2.91 -0.02 2.14 16 16 C -0.02 -1.50 5.45 84.65 0.46 -1.04 16 17 N -0.94 -61.42 13.63 21.45 0.29 -61.13 16 18 Si 1.10 55.77 29.91 68.60 2.05 57.83 16 19 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 22 C -0.05 -2.48 4.77 -19.87 -0.09 -2.57 16 23 C -0.12 -4.96 8.88 22.27 0.20 -4.76 16 24 C -0.12 -4.09 10.05 22.27 0.22 -3.87 16 25 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 26 C -0.12 -4.37 10.05 22.27 0.22 -4.15 16 27 C -0.15 -6.60 9.67 22.27 0.22 -6.39 16 28 H 0.06 0.78 6.42 -2.39 -0.02 0.77 16 29 H 0.05 0.75 6.42 -2.38 -0.02 0.74 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.75 6.54 -2.39 -0.02 0.73 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 1.09 6.35 -2.39 -0.02 1.07 16 35 H 0.07 1.09 6.54 -2.39 -0.02 1.07 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.67 6.35 -2.39 -0.02 1.65 16 40 H 0.04 1.33 7.82 -2.39 -0.02 1.31 16 41 H 0.41 8.96 8.47 -92.71 -0.79 8.17 16 42 H 0.10 3.48 7.87 -2.39 -0.02 3.46 16 43 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 44 H 0.26 16.89 6.68 -92.71 -0.62 16.27 16 45 H 0.11 4.47 7.80 -2.91 -0.02 4.44 16 46 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 47 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 48 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 49 H 0.09 4.23 7.95 -2.91 -0.02 4.21 16 Total: -1.00 -81.59 391.64 3.84 -77.75 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.30 Total: 28.30 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 5.29 Total: -35.85 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.28 Total: -85.83 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -1.52 Total: -42.19 kcal Atomic # 14 Polarization: 55.77 SS G_CDS: 2.05 Total: 57.83 kcal Total: -81.59 3.84 -77.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871257521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.502 kcal (2) G-P(sol) polarization free energy of solvation -81.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds