Wall clock time and date at job start Tue Mar 31 2020 12:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00358 * 2 1 4 4 C 1.53003 * 109.47029 * 60.00635 * 3 2 1 5 5 C 1.52999 * 109.47241 * 300.00121 * 3 2 1 6 6 C 1.53006 * 109.47165 * 180.02562 * 3 2 1 7 7 C 1.52996 * 109.47213 * 64.99851 * 6 3 2 8 8 N 1.46495 * 109.47168 * 179.97438 * 7 6 3 9 9 C 1.34779 * 120.00324 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99703 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00201 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.47044 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47493 * 305.98058 * 12 11 9 14 14 C 1.50699 * 109.46802 * 65.98063 * 12 11 9 15 15 H 1.07996 * 120.00319 * 26.91275 * 14 12 11 16 16 C 1.37882 * 120.00193 * 206.90875 * 14 12 11 17 17 N 1.31519 * 119.99874 * 353.28371 * 16 14 12 18 18 Si 1.86801 * 120.00294 * 173.55447 * 16 14 12 19 19 H 1.48497 * 109.47144 * 269.72519 * 18 16 14 20 20 H 1.48498 * 109.46829 * 29.72826 * 18 16 14 21 21 H 1.48507 * 109.46835 * 149.72714 * 18 16 14 22 22 C 1.50699 * 109.47289 * 185.97873 * 12 11 9 23 23 C 1.38237 * 119.99863 * 294.44402 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78435 * 23 22 12 25 25 C 1.38229 * 120.00057 * 0.44553 * 24 23 22 26 26 C 1.38236 * 119.99936 * 359.80698 * 25 24 23 27 27 C 1.38230 * 120.00146 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46765 * 299.99762 * 1 2 3 29 29 H 1.09006 * 109.47349 * 59.99155 * 1 2 3 30 30 H 1.08990 * 109.47527 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47012 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46682 * 299.99548 * 4 3 2 33 33 H 1.08994 * 109.47043 * 59.99482 * 4 3 2 34 34 H 1.08998 * 109.47418 * 299.99941 * 5 3 2 35 35 H 1.08996 * 109.47197 * 60.00394 * 5 3 2 36 36 H 1.08999 * 109.47040 * 179.97438 * 5 3 2 37 37 H 1.09006 * 109.46847 * 305.00190 * 6 3 2 38 38 H 1.08997 * 109.46874 * 185.00389 * 6 3 2 39 39 H 1.09006 * 109.46938 * 60.00395 * 7 6 3 40 40 H 1.08995 * 109.47200 * 300.00347 * 7 6 3 41 41 H 0.97006 * 119.99754 * 0.02562 * 8 7 6 42 42 H 1.09006 * 109.46831 * 60.00366 * 11 9 8 43 43 H 1.08995 * 109.47505 * 300.00197 * 11 9 8 44 44 H 0.97005 * 119.99795 * 354.69035 * 17 16 14 45 45 H 1.07999 * 119.99895 * 359.97438 * 23 22 12 46 46 H 1.08004 * 120.00271 * 180.27444 * 24 23 22 47 47 H 1.08007 * 120.00590 * 179.83396 * 25 24 23 48 48 H 1.08003 * 120.00202 * 180.02562 * 26 25 24 49 49 H 1.08004 * 120.00248 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5590 2.0646 1.2493 5 6 1.5589 2.0647 -1.2492 6 6 3.5356 1.1845 -0.0006 7 6 3.9953 0.5367 -1.3082 8 7 5.4557 0.4215 -1.3091 9 6 6.0882 -0.1228 -2.3675 10 8 5.4483 -0.5167 -3.3195 11 6 7.5905 -0.2407 -2.3687 12 6 8.0502 -0.8886 -3.6762 13 1 7.5265 -1.8340 -3.8171 14 6 7.7427 0.0326 -4.8285 15 1 7.6865 1.0990 -4.6672 16 6 7.5331 -0.4859 -6.0888 17 7 7.7306 -1.7665 -6.3141 18 14 6.9759 0.6318 -7.4779 19 1 5.4920 0.6647 -7.5218 20 1 7.4950 2.0039 -7.2476 21 1 7.4980 0.1151 -8.7686 22 6 9.5348 -1.1408 -3.6171 23 6 10.4149 -0.0764 -3.5582 24 6 11.7765 -0.3078 -3.4995 25 6 12.2584 -1.6034 -3.5090 26 6 11.3785 -2.6676 -3.5732 27 6 10.0168 -2.4364 -3.6273 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0275 -0.0005 31 1 2.0020 3.0605 1.2491 32 1 0.4724 2.1508 1.2493 33 1 1.8806 1.5236 2.1392 34 1 1.8804 1.5238 -2.1392 35 1 0.4723 2.1509 -1.2492 36 1 2.0019 3.0606 -1.2489 37 1 3.8515 0.5679 0.8410 38 1 3.9786 2.1763 0.0890 39 1 3.6793 1.1532 -2.1499 40 1 3.5521 -0.4551 -1.3978 41 1 5.9675 0.7370 -0.5478 42 1 7.9072 -0.8571 -1.5272 43 1 8.0330 0.7514 -2.2791 44 1 8.0969 -2.3311 -5.6155 45 1 10.0385 0.9359 -3.5550 46 1 12.4639 0.5236 -3.4490 47 1 13.3223 -1.7842 -3.4659 48 1 11.7550 -3.6799 -3.5802 49 1 9.3294 -3.2679 -3.6779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871257522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:01 Heat of formation + Delta-G solvation = -75.714156 kcal Electronic energy + Delta-G solvation = -26930.200289 eV Core-core repulsion = 23242.685879 eV Total energy + Delta-G solvation = -3687.514411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.58680 -38.94168 -38.19743 -35.19827 -34.14219 -33.03606 -31.29514 -30.08890 -29.65383 -28.49015 -27.75137 -26.88769 -25.02539 -23.26396 -22.42355 -21.62609 -20.33210 -20.01336 -19.32599 -16.95437 -16.64154 -16.25659 -15.95333 -15.80325 -15.31262 -15.07940 -15.01131 -14.35765 -14.06501 -13.79985 -13.65476 -13.62624 -13.28226 -12.77404 -12.75323 -12.61166 -12.35131 -12.28404 -12.24570 -11.92169 -11.82836 -11.73492 -11.54676 -11.39443 -11.06738 -10.80661 -10.67539 -10.64233 -10.40247 -10.09391 -10.02278 -9.74816 -9.65401 -8.96391 -8.58637 -8.48647 -8.23170 -8.11554 -7.60770 -6.18368 -3.86930 2.21443 2.27119 3.52428 3.53856 3.57109 3.58694 3.71022 3.72219 4.53409 4.57220 4.63834 4.71032 4.77716 5.07848 5.12728 5.17082 5.19738 5.32043 5.34587 5.46612 5.49177 5.52741 5.56339 5.61686 5.65921 5.71880 5.78673 5.80181 5.85374 5.95813 6.04832 6.11335 6.18268 6.20139 6.27708 6.34356 6.45472 6.72903 6.82025 6.95827 6.97201 7.04529 7.23948 7.26103 7.41242 7.76722 7.88528 8.11517 8.27587 8.56330 9.01129 9.10613 9.81901 11.21248 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.003091 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.797084 B = 9056.367062 C =10241.372358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.114 3.886 4 C -0.177 4.177 5 C -0.185 4.185 6 C -0.115 4.115 7 C 0.122 3.878 8 N -0.751 5.751 9 C 0.512 3.488 10 O -0.499 6.499 11 C -0.116 4.116 12 C 0.072 3.928 13 H 0.049 0.951 14 C -0.566 4.566 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.907 5.907 18 Si 1.063 2.937 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.288 1.288 22 C -0.032 4.032 23 C -0.107 4.107 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.391 0.609 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.271 0.729 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 6.821 16.065 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.075 3.925 4 C -0.234 4.234 5 C -0.243 4.243 6 C -0.153 4.153 7 C -0.002 4.002 8 N -0.406 5.406 9 C 0.298 3.702 10 O -0.371 6.371 11 C -0.157 4.157 12 C 0.053 3.947 13 H 0.068 0.932 14 C -0.604 4.604 15 H 0.063 0.937 16 C -0.174 4.174 17 N -0.543 5.543 18 Si 0.893 3.107 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.214 1.214 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.224 0.776 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.984 6.353 13.714 17.093 hybrid contribution 0.502 0.480 1.903 2.026 sum -7.483 6.832 15.617 18.616 Atomic orbital electron populations 1.22781 0.81700 1.02643 1.00008 1.88014 1.19362 1.27109 1.94979 1.21414 0.93247 0.83498 0.94378 1.22410 1.01828 1.00958 0.98228 1.22535 1.01655 1.01219 0.98855 1.21770 0.92753 1.01906 0.98845 1.21248 0.81001 1.01354 0.96558 1.46187 1.06917 1.66180 1.21359 1.20835 0.90846 0.77008 0.81500 1.90749 1.67666 1.45653 1.33000 1.21656 0.91127 1.02139 1.00734 1.17866 0.86715 0.98301 0.91811 0.93247 1.21557 1.51908 0.93082 0.93816 0.93665 1.25568 0.94385 0.97967 0.99457 1.70696 1.41060 1.05270 1.37255 0.83642 0.76692 0.74543 0.75848 1.21490 1.21736 1.21369 1.20865 0.98785 0.91834 0.91812 1.20926 0.92255 0.99214 1.00073 1.21012 0.95631 0.96215 1.01991 1.20821 0.98427 0.93136 1.04707 1.20963 0.93761 0.98023 1.01539 1.21082 0.94848 0.96998 1.01921 0.94025 0.93726 0.89784 0.91366 0.92121 0.91698 0.90680 0.92252 0.91304 0.90560 0.90074 0.91738 0.91290 0.77628 0.91706 0.90339 0.91744 0.86687 0.87469 0.87603 0.87463 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.21 101.05 1.03 1.25 16 2 O -0.38 -4.37 9.88 -35.23 -0.35 -4.72 16 3 C 0.11 1.12 0.82 -90.62 -0.07 1.04 16 4 C -0.18 -1.33 8.25 37.16 0.31 -1.02 16 5 C -0.19 -1.78 7.76 37.16 0.29 -1.49 16 6 C -0.12 -1.17 4.62 -26.73 -0.12 -1.30 16 7 C 0.12 1.75 5.08 -4.05 -0.02 1.73 16 8 N -0.75 -11.50 5.56 -60.30 -0.33 -11.83 16 9 C 0.51 10.51 7.58 -10.99 -0.08 10.43 16 10 O -0.50 -12.91 15.02 5.56 0.08 -12.83 16 11 C -0.12 -2.30 4.95 -27.89 -0.14 -2.44 16 12 C 0.07 1.76 1.23 -92.93 -0.11 1.65 16 13 H 0.05 1.37 6.59 -51.93 -0.34 1.03 16 14 C -0.57 -15.64 6.35 -34.44 -0.22 -15.86 16 15 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 16 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 17 N -0.91 -28.15 13.56 55.43 0.75 -27.40 16 18 Si 1.06 26.71 29.91 -169.99 -5.08 21.62 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.03 -0.73 4.53 -104.62 -0.47 -1.20 16 23 C -0.11 -2.21 8.90 -39.58 -0.35 -2.56 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 25 C -0.15 -2.68 10.05 -39.59 -0.40 -3.08 16 26 C -0.12 -2.32 10.05 -39.59 -0.40 -2.72 16 27 C -0.13 -2.77 9.18 -39.59 -0.36 -3.13 16 28 H 0.04 0.30 6.42 -51.93 -0.33 -0.04 16 29 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.87 6.34 -51.93 -0.33 0.54 16 35 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.00 6.34 -51.93 -0.33 0.67 16 40 H 0.07 1.14 7.82 -51.93 -0.41 0.74 16 41 H 0.39 4.60 8.47 -40.82 -0.35 4.26 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.44 7.97 -51.93 -0.41 1.03 16 44 H 0.27 8.28 6.24 -40.82 -0.25 8.03 16 45 H 0.12 2.32 7.85 -52.49 -0.41 1.91 16 46 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 47 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 48 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 49 H 0.11 2.32 7.95 -52.48 -0.42 1.90 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -34.71 390.80 -8.70 -43.41 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.03 Total: 6.50 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.63 Total: -20.64 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.42 Total: -39.23 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.26 Total: -17.55 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -5.08 Total: 21.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.71 -8.70 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871257522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.305 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds