Wall clock time and date at job start Tue Mar 31 2020 12:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00358 * 2 1 4 4 C 1.53003 * 109.47029 * 60.00635 * 3 2 1 5 5 C 1.52999 * 109.47241 * 300.00121 * 3 2 1 6 6 C 1.53006 * 109.47165 * 180.02562 * 3 2 1 7 7 C 1.52996 * 109.47213 * 64.99851 * 6 3 2 8 8 N 1.46495 * 109.47168 * 179.97438 * 7 6 3 9 9 C 1.34779 * 120.00324 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99703 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00201 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.47044 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47493 * 305.98058 * 12 11 9 14 14 C 1.50699 * 109.46802 * 65.98063 * 12 11 9 15 15 H 1.07996 * 120.00319 * 26.91275 * 14 12 11 16 16 C 1.37882 * 120.00193 * 206.90875 * 14 12 11 17 17 N 1.31519 * 119.99874 * 353.28371 * 16 14 12 18 18 Si 1.86801 * 120.00294 * 173.55447 * 16 14 12 19 19 H 1.48497 * 109.47144 * 269.72519 * 18 16 14 20 20 H 1.48498 * 109.46829 * 29.72826 * 18 16 14 21 21 H 1.48507 * 109.46835 * 149.72714 * 18 16 14 22 22 C 1.50699 * 109.47289 * 185.97873 * 12 11 9 23 23 C 1.38237 * 119.99863 * 294.44402 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78435 * 23 22 12 25 25 C 1.38229 * 120.00057 * 0.44553 * 24 23 22 26 26 C 1.38236 * 119.99936 * 359.80698 * 25 24 23 27 27 C 1.38230 * 120.00146 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46765 * 299.99762 * 1 2 3 29 29 H 1.09006 * 109.47349 * 59.99155 * 1 2 3 30 30 H 1.08990 * 109.47527 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47012 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46682 * 299.99548 * 4 3 2 33 33 H 1.08994 * 109.47043 * 59.99482 * 4 3 2 34 34 H 1.08998 * 109.47418 * 299.99941 * 5 3 2 35 35 H 1.08996 * 109.47197 * 60.00394 * 5 3 2 36 36 H 1.08999 * 109.47040 * 179.97438 * 5 3 2 37 37 H 1.09006 * 109.46847 * 305.00190 * 6 3 2 38 38 H 1.08997 * 109.46874 * 185.00389 * 6 3 2 39 39 H 1.09006 * 109.46938 * 60.00395 * 7 6 3 40 40 H 1.08995 * 109.47200 * 300.00347 * 7 6 3 41 41 H 0.97006 * 119.99754 * 0.02562 * 8 7 6 42 42 H 1.09006 * 109.46831 * 60.00366 * 11 9 8 43 43 H 1.08995 * 109.47505 * 300.00197 * 11 9 8 44 44 H 0.97005 * 119.99795 * 354.69035 * 17 16 14 45 45 H 1.07999 * 119.99895 * 359.97438 * 23 22 12 46 46 H 1.08004 * 120.00271 * 180.27444 * 24 23 22 47 47 H 1.08007 * 120.00590 * 179.83396 * 25 24 23 48 48 H 1.08003 * 120.00202 * 180.02562 * 26 25 24 49 49 H 1.08004 * 120.00248 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5590 2.0646 1.2493 5 6 1.5589 2.0647 -1.2492 6 6 3.5356 1.1845 -0.0006 7 6 3.9953 0.5367 -1.3082 8 7 5.4557 0.4215 -1.3091 9 6 6.0882 -0.1228 -2.3675 10 8 5.4483 -0.5167 -3.3195 11 6 7.5905 -0.2407 -2.3687 12 6 8.0502 -0.8886 -3.6762 13 1 7.5265 -1.8340 -3.8171 14 6 7.7427 0.0326 -4.8285 15 1 7.6865 1.0990 -4.6672 16 6 7.5331 -0.4859 -6.0888 17 7 7.7306 -1.7665 -6.3141 18 14 6.9759 0.6318 -7.4779 19 1 5.4920 0.6647 -7.5218 20 1 7.4950 2.0039 -7.2476 21 1 7.4980 0.1151 -8.7686 22 6 9.5348 -1.1408 -3.6171 23 6 10.4149 -0.0764 -3.5582 24 6 11.7765 -0.3078 -3.4995 25 6 12.2584 -1.6034 -3.5090 26 6 11.3785 -2.6676 -3.5732 27 6 10.0168 -2.4364 -3.6273 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0275 -0.0005 31 1 2.0020 3.0605 1.2491 32 1 0.4724 2.1508 1.2493 33 1 1.8806 1.5236 2.1392 34 1 1.8804 1.5238 -2.1392 35 1 0.4723 2.1509 -1.2492 36 1 2.0019 3.0606 -1.2489 37 1 3.8515 0.5679 0.8410 38 1 3.9786 2.1763 0.0890 39 1 3.6793 1.1532 -2.1499 40 1 3.5521 -0.4551 -1.3978 41 1 5.9675 0.7370 -0.5478 42 1 7.9072 -0.8571 -1.5272 43 1 8.0330 0.7514 -2.2791 44 1 8.0969 -2.3311 -5.6155 45 1 10.0385 0.9359 -3.5550 46 1 12.4639 0.5236 -3.4490 47 1 13.3223 -1.7842 -3.4659 48 1 11.7550 -3.6799 -3.5802 49 1 9.3294 -3.2679 -3.6779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871257522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:00 Heat of formation + Delta-G solvation = -98.067889 kcal Electronic energy + Delta-G solvation = -26931.169620 eV Core-core repulsion = 23242.685879 eV Total energy + Delta-G solvation = -3688.483741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86539 -40.16676 -39.69416 -36.54043 -35.89556 -34.14215 -33.25117 -31.60767 -30.95703 -29.75319 -28.45822 -27.73285 -26.84250 -24.89155 -23.72460 -23.16527 -21.83905 -21.27148 -20.63437 -18.83855 -18.03021 -17.43038 -17.15297 -17.11326 -16.57807 -16.20098 -16.03456 -15.82029 -15.65876 -15.61194 -15.12954 -14.70157 -14.41259 -14.38797 -14.05095 -13.92633 -13.83476 -13.43471 -13.30869 -13.16733 -12.95020 -12.73870 -12.69299 -12.64273 -12.49597 -12.35756 -12.05560 -11.96664 -11.94691 -11.71716 -11.51487 -11.42669 -10.75662 -10.57134 -10.49554 -10.35636 -9.94663 -9.63901 -9.26745 -8.44363 -6.10968 0.68068 0.74046 1.47267 1.58014 1.71913 1.90449 2.34380 2.62220 2.85349 3.11159 3.36779 3.72342 3.81343 4.00528 4.11294 4.13909 4.20862 4.28788 4.30127 4.35616 4.44651 4.44832 4.49695 4.50857 4.60747 4.64059 4.67680 4.69253 4.83074 4.85643 4.87581 4.87758 4.98350 5.02009 5.10123 5.16595 5.22290 5.24297 5.36104 5.41160 5.43764 5.61038 5.74918 5.82608 5.95429 6.24555 6.31567 6.32516 6.41128 6.74590 6.79092 7.54427 7.64603 8.96027 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.003091 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.797084 B = 9056.367062 C =10241.372358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.406 6.406 3 C 0.109 3.891 4 C -0.170 4.170 5 C -0.185 4.185 6 C -0.105 4.105 7 C 0.125 3.875 8 N -0.726 5.726 9 C 0.508 3.492 10 O -0.564 6.564 11 C -0.110 4.110 12 C 0.074 3.926 13 H 0.001 0.999 14 C -0.556 4.556 15 H 0.040 0.960 16 C -0.026 4.026 17 N -0.945 5.945 18 Si 1.099 2.901 19 H -0.291 1.291 20 H -0.265 1.265 21 H -0.286 1.286 22 C -0.056 4.056 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.154 4.154 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.039 0.961 41 H 0.413 0.587 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.261 0.739 45 H 0.115 0.885 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.135 0.865 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 9.094 18.322 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.326 6.326 3 C 0.069 3.931 4 C -0.227 4.227 5 C -0.242 4.242 6 C -0.143 4.143 7 C 0.001 3.999 8 N -0.381 5.381 9 C 0.296 3.704 10 O -0.441 6.441 11 C -0.150 4.150 12 C 0.054 3.946 13 H 0.020 0.980 14 C -0.594 4.594 15 H 0.058 0.942 16 C -0.224 4.224 17 N -0.584 5.584 18 Si 0.924 3.076 19 H -0.218 1.218 20 H -0.190 1.190 21 H -0.212 1.212 22 C -0.057 4.057 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.172 4.172 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.133 0.867 46 H 0.162 0.838 47 H 0.165 0.835 48 H 0.153 0.847 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.271 8.671 16.054 19.293 hybrid contribution 0.001 -0.256 1.321 1.346 sum -6.269 8.416 17.375 20.298 Atomic orbital electron populations 1.22923 0.80438 1.03269 1.00981 1.87975 1.20953 1.28469 1.95209 1.21555 0.92696 0.83225 0.95596 1.22349 1.02494 1.01263 0.96637 1.22526 1.02537 1.01439 0.97679 1.21768 0.93502 1.02867 0.96141 1.21260 0.79830 0.99987 0.98802 1.45927 1.07656 1.64031 1.20514 1.21048 0.91210 0.76509 0.81683 1.90729 1.68830 1.48766 1.35795 1.21566 0.90755 1.03267 0.99423 1.17689 0.88197 0.95657 0.93023 0.98036 1.21822 1.49823 0.93159 0.94559 0.94155 1.26749 0.94893 0.98446 1.02358 1.70784 1.44084 1.06286 1.37221 0.83187 0.76169 0.74479 0.73777 1.21832 1.18952 1.21231 1.20625 0.97494 0.93148 0.94415 1.21012 0.93474 0.98491 1.00990 1.21414 0.94880 0.97893 1.00008 1.21314 1.00319 0.92316 1.02216 1.21297 0.92530 1.00150 1.00328 1.21131 0.96343 0.96257 1.03497 0.92128 0.93574 0.89509 0.89802 0.91278 0.91494 0.93563 0.91109 0.89967 0.89714 0.87508 0.93192 0.94207 0.75032 0.88974 0.88265 0.92915 0.86719 0.83840 0.83494 0.84727 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.21 113.37 1.16 1.49 16 2 O -0.41 -9.36 9.88 -148.98 -1.47 -10.84 16 3 C 0.11 1.99 0.82 -10.79 -0.01 1.98 16 4 C -0.17 -2.09 8.25 71.98 0.59 -1.49 16 5 C -0.18 -3.41 7.76 71.98 0.56 -2.85 16 6 C -0.11 -1.98 4.62 30.60 0.14 -1.84 16 7 C 0.12 3.65 5.08 86.38 0.44 4.08 16 8 N -0.73 -22.02 5.56 -463.08 -2.57 -24.60 16 9 C 0.51 21.48 7.58 87.66 0.66 22.14 16 10 O -0.56 -30.98 15.02 -3.02 -0.05 -31.02 16 11 C -0.11 -4.39 4.95 29.85 0.15 -4.25 16 12 C 0.07 3.74 1.23 -12.29 -0.02 3.72 16 13 H 0.00 0.08 6.59 -2.39 -0.02 0.07 16 14 C -0.56 -31.70 6.35 25.60 0.16 -31.54 16 15 H 0.04 2.27 7.82 -2.91 -0.02 2.25 16 16 C -0.03 -1.60 5.45 84.66 0.46 -1.14 16 17 N -0.95 -61.67 13.56 21.45 0.29 -61.38 16 18 Si 1.10 55.18 29.91 68.60 2.05 57.24 16 19 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 20 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 22 C -0.06 -2.56 4.53 -19.87 -0.09 -2.66 16 23 C -0.12 -4.87 8.90 22.27 0.20 -4.67 16 24 C -0.12 -4.09 10.05 22.27 0.22 -3.86 16 25 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 26 C -0.13 -4.42 10.05 22.27 0.22 -4.19 16 27 C -0.15 -6.67 9.18 22.27 0.20 -6.46 16 28 H 0.06 0.76 6.42 -2.39 -0.02 0.74 16 29 H 0.05 0.73 6.42 -2.38 -0.02 0.71 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.74 6.54 -2.39 -0.02 0.73 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.05 1.12 6.34 -2.39 -0.02 1.10 16 35 H 0.07 1.11 6.54 -2.39 -0.02 1.10 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.62 6.34 -2.38 -0.02 1.61 16 40 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 41 H 0.41 8.90 8.47 -92.70 -0.79 8.12 16 42 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 43 H 0.10 3.53 7.97 -2.39 -0.02 3.51 16 44 H 0.26 17.00 6.24 -92.70 -0.58 16.42 16 45 H 0.11 4.49 7.85 -2.91 -0.02 4.47 16 46 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 47 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 48 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 49 H 0.09 4.23 7.95 -2.91 -0.02 4.21 16 Total: -1.00 -81.43 390.80 3.87 -77.56 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.34 Total: 28.85 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 5.29 Total: -35.81 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.28 Total: -85.98 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.52 Total: -41.86 kcal Atomic # 14 Polarization: 55.18 SS G_CDS: 2.05 Total: 57.24 kcal Total: -81.43 3.87 -77.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871257522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.511 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds