Wall clock time and date at job start Tue Mar 31 2020 13:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47456 * 2 1 4 4 O 1.42905 * 109.47118 * 240.00272 * 2 1 3 5 5 C 1.52999 * 109.47167 * 120.00501 * 2 1 3 6 6 H 1.08999 * 109.53767 * 65.09546 * 5 2 1 7 7 C 1.53118 * 109.50135 * 304.99802 * 5 2 1 8 8 C 1.53121 * 109.21283 * 182.37642 * 7 5 2 9 9 C 1.53167 * 109.20834 * 57.62366 * 8 7 5 10 10 N 1.46856 * 109.55833 * 300.85777 * 9 8 7 11 11 C 1.46899 * 110.99820 * 185.84087 * 10 9 8 12 12 C 1.50697 * 109.47268 * 45.79244 * 11 10 9 13 13 C 1.38291 * 119.93388 * 269.72250 * 12 11 10 14 14 C 1.38098 * 120.07193 * 179.72418 * 13 12 11 15 15 C 1.38877 * 119.93002 * 0.52799 * 14 13 12 16 16 O 1.35749 * 120.07358 * 179.72187 * 15 14 13 17 17 C 1.34832 * 117.00289 * 174.48957 * 16 15 14 18 18 H 1.08000 * 119.99682 * 5.05926 * 17 16 15 19 19 C 1.38654 * 119.99967 * 185.06092 * 17 16 15 20 20 N 1.31554 * 120.00323 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99715 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47000 * 60.00252 * 21 19 17 23 23 H 1.48502 * 109.46618 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47082 * 300.00075 * 21 19 17 25 25 C 1.38883 * 119.85857 * 359.74768 * 15 14 13 26 26 C 1.38092 * 119.93408 * 0.02562 * 25 15 14 27 27 C 1.46842 * 111.19233 * 61.74553 * 10 9 8 28 28 H 1.09003 * 109.46989 * 299.99673 * 1 2 3 29 29 H 1.09003 * 109.47552 * 60.00013 * 1 2 3 30 30 H 1.09006 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47036 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46858 * 300.00011 * 3 2 1 33 33 H 1.09003 * 109.46755 * 60.00184 * 3 2 1 34 34 H 0.96707 * 113.99652 * 299.99880 * 4 2 1 35 35 H 1.09006 * 109.52401 * 302.30638 * 7 5 2 36 36 H 1.09001 * 109.52392 * 62.43896 * 7 5 2 37 37 H 1.09002 * 109.50194 * 177.62696 * 8 7 5 38 38 H 1.09007 * 109.50056 * 297.74455 * 8 7 5 39 39 H 1.09003 * 109.44338 * 180.83934 * 9 8 7 40 40 H 1.08997 * 109.44377 * 60.88262 * 9 8 7 41 41 H 1.08998 * 109.46534 * 165.79422 * 11 10 9 42 42 H 1.09001 * 109.46931 * 285.79049 * 11 10 9 43 43 H 1.08003 * 119.96634 * 359.97438 * 13 12 11 44 44 H 1.08000 * 120.03695 * 180.27284 * 14 13 12 45 45 H 0.96995 * 120.00473 * 179.97438 * 20 19 17 46 46 H 1.08001 * 120.02994 * 180.02562 * 25 15 14 47 47 H 1.08003 * 119.96822 * 180.02562 * 26 25 15 48 48 H 1.09003 * 109.46195 * 178.24086 * 27 10 9 49 49 H 1.09005 * 109.45854 * 58.26749 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7214 1.2492 6 1 1.7536 -1.7722 1.2057 7 6 1.4298 -0.0765 2.4967 8 6 1.9901 -0.7643 3.7447 9 6 3.5176 -0.6517 3.7394 10 7 4.0530 -1.2838 2.5267 11 6 5.5213 -1.3170 2.5548 12 6 5.9874 -1.7882 3.9082 13 6 6.2245 -0.8699 4.9146 14 6 6.6462 -1.2990 6.1576 15 6 6.8427 -2.6535 6.3932 16 8 7.2626 -3.0780 7.6123 17 6 7.3235 -4.4105 7.8090 18 1 7.1238 -5.0867 6.9909 19 6 7.6424 -4.9126 9.0615 20 7 7.8861 -4.0889 10.0579 21 14 7.7261 -6.7587 9.3340 22 1 8.7564 -7.3449 8.4395 23 1 8.0834 -7.0344 10.7488 24 1 6.4046 -7.3643 9.0306 25 6 6.6091 -3.5727 5.3787 26 6 6.1830 -3.1377 4.1393 27 6 3.5648 -0.6097 1.3170 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7209 -1.5952 -1.2330 35 1 1.6837 0.9834 2.5201 36 1 0.3461 -0.1911 2.4731 37 1 1.5911 -0.2811 4.6366 38 1 1.7030 -1.8159 3.7405 39 1 3.9215 -1.1532 4.6188 40 1 3.8039 0.3999 3.7574 41 1 5.8839 -2.0007 1.7873 42 1 5.9110 -0.3171 2.3641 43 1 6.0759 0.1837 4.7295 44 1 6.8270 -0.5817 6.9445 45 1 8.1089 -4.4401 10.9341 46 1 6.7606 -4.6268 5.5590 47 1 6.0008 -3.8522 3.3501 48 1 4.0029 -1.0806 0.4369 49 1 3.8509 0.4417 1.3466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879962883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:57 Heat of formation + Delta-G solvation = -60.243005 kcal Electronic energy + Delta-G solvation = -27179.864725 eV Core-core repulsion = 23493.021193 eV Total energy + Delta-G solvation = -3686.843531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.17770 -39.07676 -37.67920 -36.29807 -34.00296 -32.36416 -32.07605 -30.27067 -30.19399 -28.92859 -27.79007 -26.01551 -24.99876 -23.55113 -22.77997 -21.98086 -20.96227 -20.00483 -19.29721 -17.97323 -17.09760 -16.81418 -15.97270 -15.47966 -15.11126 -14.75842 -14.73370 -14.50710 -14.32448 -14.07660 -13.77155 -13.61344 -13.53703 -13.20605 -12.84125 -12.72271 -12.61734 -12.47374 -12.30372 -12.22845 -11.94924 -11.78734 -11.75109 -11.49373 -11.23198 -10.94861 -10.85375 -10.73003 -10.65060 -10.61204 -10.50140 -10.43774 -10.25623 -9.81812 -9.33060 -8.82872 -8.17545 -8.13048 -7.15568 -6.45264 -4.04039 2.20955 2.28789 3.13177 3.14188 3.17004 3.87692 3.96696 4.04906 4.47181 4.52491 4.65090 4.66893 4.85426 4.90118 5.08756 5.09216 5.22354 5.26738 5.30618 5.31430 5.41789 5.44996 5.50573 5.52101 5.54479 5.63881 5.69571 5.73375 5.77335 5.80702 5.81279 5.88506 5.94778 5.95058 6.05742 6.10693 6.21577 6.28988 6.34571 6.44435 6.69804 6.91012 7.04869 7.16749 7.24599 7.33323 7.41859 7.42739 7.45092 7.82504 7.99867 9.00390 9.70416 10.72675 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.002408 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.535467 B =11626.834249 C =11720.173553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.132 3.868 3 C -0.143 4.143 4 O -0.561 6.561 5 C -0.105 4.105 6 H 0.079 0.921 7 C -0.117 4.117 8 C -0.117 4.117 9 C 0.052 3.948 10 N -0.533 5.533 11 C 0.114 3.886 12 C -0.185 4.185 13 C -0.068 4.068 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.235 4.235 26 C -0.049 4.049 27 C 0.063 3.937 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.375 0.625 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 7.648 -17.935 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.200 4.200 4 O -0.367 6.367 5 C -0.125 4.125 6 H 0.098 0.902 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.076 4.076 10 N -0.258 5.258 11 C -0.012 4.012 12 C -0.186 4.186 13 C -0.087 4.087 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.255 4.255 26 C -0.068 4.068 27 C -0.065 4.065 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.223 0.777 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.124 0.876 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.144 0.856 47 H 0.126 0.874 48 H 0.094 0.906 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.860 7.858 -17.589 23.162 hybrid contribution 0.044 -0.707 0.314 0.775 sum -12.816 7.151 -17.275 22.667 Atomic orbital electron populations 1.22540 0.95903 1.02475 1.02729 1.21181 0.92346 0.92930 0.84464 1.21865 1.02271 0.93738 1.02157 1.86544 1.77360 1.28907 1.43849 1.21821 0.95703 1.00470 0.94460 0.90244 1.21748 0.99767 0.99571 0.94344 1.21621 0.95397 1.01404 0.97086 1.22215 0.94402 0.96631 0.94304 1.62019 1.08355 1.53703 1.01714 1.20787 0.86209 0.98821 0.95385 1.19088 1.10400 0.93740 0.95366 1.20487 0.98148 0.97739 0.92316 1.20161 1.09841 0.93458 0.97835 1.19392 0.91212 0.92828 0.86398 1.83975 1.72042 1.25723 1.26354 1.21283 1.49496 0.79052 0.96959 0.89099 1.25286 0.96515 1.00408 0.94282 1.70025 1.43239 1.34993 1.01547 0.85789 0.79132 0.80615 0.77951 1.19489 1.20285 1.19482 1.21158 1.10121 1.00280 0.93916 1.20572 0.96071 0.94378 0.95808 1.22093 0.94292 0.96659 0.93413 0.91199 0.92049 0.92320 0.91556 0.92215 0.91065 0.77733 0.92040 0.91738 0.91645 0.91220 0.89075 0.95615 0.90876 0.95185 0.87613 0.86650 0.91970 0.85617 0.87437 0.90642 0.94914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 8.33 37.15 0.31 -0.90 16 2 C 0.13 1.07 0.87 -90.62 -0.08 0.99 16 3 C -0.14 -1.17 8.11 37.16 0.30 -0.87 16 4 O -0.56 -4.99 12.54 -35.23 -0.44 -5.43 16 5 C -0.11 -0.96 1.93 -90.54 -0.17 -1.14 16 6 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 7 C -0.12 -1.05 4.51 -26.61 -0.12 -1.17 16 8 C -0.12 -1.30 6.11 -26.58 -0.16 -1.46 16 9 C 0.05 0.69 4.58 -3.76 -0.02 0.67 16 10 N -0.53 -6.99 4.80 -236.02 -1.13 -8.13 16 11 C 0.11 1.61 5.43 -4.98 -0.03 1.58 16 12 C -0.18 -3.13 4.12 -104.58 -0.43 -3.56 16 13 C -0.07 -1.20 7.80 -39.61 -0.31 -1.51 16 14 C -0.19 -4.06 9.99 -39.40 -0.39 -4.45 16 15 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 16 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16 17 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 21 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.24 -5.11 9.17 -39.40 -0.36 -5.47 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 C 0.06 0.70 4.13 -3.83 -0.02 0.68 16 28 H 0.07 0.44 6.40 -51.93 -0.33 0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.60 6.33 -51.93 -0.33 0.27 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.52 6.52 -51.93 -0.34 0.18 16 34 H 0.38 2.18 9.05 45.56 0.41 2.59 16 35 H 0.06 0.54 6.47 -51.93 -0.34 0.21 16 36 H 0.06 0.51 6.50 -51.93 -0.34 0.17 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.45 5.65 -51.93 -0.29 1.15 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 42 H 0.03 0.40 8.02 -51.93 -0.42 -0.01 16 43 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 45 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 46 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 47 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 48 H 0.08 0.86 7.83 -51.93 -0.41 0.45 16 49 H 0.03 0.37 6.29 -51.93 -0.33 0.04 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -30.53 375.50 -9.16 -39.69 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.06 Total: 6.40 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -1.93 Total: -24.07 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: -0.37 Total: -32.68 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.44 Total: -10.50 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.53 -9.16 -39.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879962883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.549 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds